Wall clock time and date at job start Tue Mar 31 2020 03:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47312 * 2 1 4 4 C 1.50701 * 109.47121 * 120.00158 * 2 1 3 5 5 H 1.07998 * 120.00223 * 119.99670 * 4 2 1 6 6 C 1.37874 * 119.99719 * 299.99594 * 4 2 1 7 7 N 1.31520 * 120.00294 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00172 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46721 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47139 * 120.00244 * 8 6 4 11 11 H 1.48499 * 109.47198 * 240.00463 * 8 6 4 12 12 N 1.46505 * 109.47206 * 239.99979 * 2 1 3 13 13 C 1.46499 * 119.99518 * 295.23849 * 12 2 1 14 14 S 1.65598 * 119.99975 * 115.23830 * 12 2 1 15 15 O 1.42098 * 106.39957 * 162.22760 * 14 12 2 16 16 O 1.42098 * 106.40349 * 29.31020 * 14 12 2 17 17 N 1.65599 * 107.21804 * 275.76713 * 14 12 2 18 18 C 1.46498 * 119.99805 * 294.73986 * 17 14 12 19 19 H 1.09000 * 110.45660 * 21.75098 * 18 17 14 20 20 C 1.54474 * 110.40556 * 144.14812 * 18 17 14 21 21 C 1.54369 * 103.04362 * 118.41048 * 20 18 17 22 22 O 1.45948 * 105.07272 * 342.18283 * 21 20 18 23 23 C 1.34566 * 108.39950 * 32.44203 * 22 21 20 24 24 O 1.20826 * 125.94613 * 146.64245 * 23 22 21 25 25 H 1.09001 * 109.47471 * 186.20205 * 1 2 3 26 26 H 1.08998 * 109.47314 * 306.20375 * 1 2 3 27 27 H 1.09003 * 109.47194 * 66.20218 * 1 2 3 28 28 H 0.96999 * 119.99797 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47145 * 269.99760 * 13 12 2 30 30 H 1.08994 * 109.47551 * 29.99570 * 13 12 2 31 31 H 1.09000 * 109.46666 * 150.00288 * 13 12 2 32 32 H 0.96999 * 120.00094 * 114.73523 * 17 14 12 33 33 H 1.08994 * 110.70027 * 236.79901 * 20 18 17 34 34 H 1.09003 * 110.69962 * 0.02632 * 20 18 17 35 35 H 1.09008 * 110.32152 * 101.08030 * 21 20 18 36 36 H 1.08997 * 110.32478 * 223.28047 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1463 -2.2870 3.6038 10 1 3.1465 -0.1874 4.8165 11 1 1.1659 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.7524 -2.1200 -1.3765 14 16 2.8708 0.1444 -2.3443 15 8 3.5460 -0.8287 -3.1294 16 8 3.5423 1.1940 -1.6612 17 7 1.7671 0.8682 -3.3444 18 6 0.8849 0.0475 -4.1776 19 1 0.7992 -0.9582 -3.7661 20 6 -0.5093 0.7025 -4.2937 21 6 -0.6435 0.9703 -5.8080 22 8 0.7178 0.8951 -6.3288 23 6 1.4019 -0.0065 -5.6008 24 8 2.2761 -0.7328 -6.0107 25 1 -0.3634 -1.0216 0.1110 26 1 -0.3634 0.6070 0.8292 27 1 -0.3634 0.4147 -0.9403 28 1 0.7082 1.1609 3.4844 29 1 2.5629 -2.6990 -0.9338 30 1 0.8125 -2.3791 -0.8892 31 1 1.6841 -2.3453 -2.4408 32 1 1.7047 1.8356 -3.3785 33 1 -1.2861 0.0180 -3.9531 34 1 -0.5441 1.6365 -3.7327 35 1 -1.2694 0.2086 -6.2731 36 1 -1.0609 1.9621 -5.9816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800891709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:34 Heat of formation + Delta-G solvation = -145.397340 kcal Electronic energy + Delta-G solvation = -22915.818188 eV Core-core repulsion = 19334.709177 eV Total energy + Delta-G solvation = -3581.109011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11219 -37.56145 -36.74484 -36.27284 -35.35768 -35.30210 -32.63298 -31.22354 -29.21541 -27.22539 -25.58036 -25.24429 -22.73471 -21.41780 -20.92608 -19.15955 -17.74624 -17.41725 -17.12061 -16.87217 -16.69002 -16.14218 -15.35292 -15.02214 -14.51816 -14.19320 -13.75594 -13.54701 -13.28413 -13.00654 -12.86319 -12.55824 -12.07365 -11.88221 -11.74717 -11.57775 -11.47881 -11.43122 -11.26251 -11.24708 -11.04970 -10.88560 -10.75636 -10.52241 -10.34459 -10.07588 -9.41534 -9.26956 -8.53035 -8.07290 -6.13605 -4.19224 0.99985 1.79975 3.06112 3.24616 3.33179 3.35313 3.39194 3.81221 3.89428 4.10036 4.36103 4.40574 4.50038 4.78720 4.89047 5.10985 5.19174 5.27440 5.48571 5.55108 5.71957 6.06779 6.30467 6.44544 6.54868 6.64462 6.72914 6.86117 6.92646 7.31093 7.37100 7.56331 7.71633 7.95840 8.20536 8.83376 9.46984 10.92856 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028389 B = 0.005138 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.071535 B = 5447.815976 C = 5835.989335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.988 5.988 13 C 0.107 3.893 14 S 2.770 3.230 15 O -0.979 6.979 16 O -0.968 6.968 17 N -1.111 6.111 18 C 0.103 3.897 19 H 0.124 0.876 20 C -0.163 4.163 21 C 0.053 3.947 22 O -0.353 6.353 23 C 0.467 3.533 24 O -0.419 6.419 25 H 0.035 0.965 26 H 0.089 0.911 27 H 0.011 0.989 28 H 0.263 0.737 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.418 0.582 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 0.170 -12.692 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.559 4.559 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.778 3.222 15 O -0.962 6.962 16 O -0.951 6.951 17 N -0.870 5.870 18 C -0.008 4.008 19 H 0.142 0.858 20 C -0.202 4.202 21 C -0.021 4.021 22 O -0.271 6.271 23 C 0.302 3.698 24 O -0.296 6.296 25 H 0.054 0.946 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.252 0.748 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.833 -0.110 -13.031 14.714 hybrid contribution -0.290 -0.003 1.090 1.128 sum -7.124 -0.112 -11.942 13.905 Atomic orbital electron populations 1.22120 0.98224 1.00690 0.99473 1.18762 0.91194 0.92947 0.80680 0.92481 1.21335 1.31618 1.13039 0.89880 0.91765 1.24907 0.94923 0.94990 0.99050 1.69875 1.36612 1.22747 1.23740 0.86429 0.78601 0.79691 0.82623 1.19704 1.20898 1.20994 1.57731 1.73780 1.17430 1.34187 1.21208 1.02387 0.81162 0.99139 1.02398 0.73591 0.73491 0.72675 1.93618 1.71181 1.61188 1.70204 1.93633 1.71062 1.57390 1.73055 1.56365 1.56033 1.17613 1.56958 1.21860 0.90815 0.97869 0.90234 0.85820 1.23280 0.96223 1.04167 0.96569 1.24073 0.80147 1.04772 0.93125 1.87309 1.25155 1.56431 1.58166 1.23808 0.81096 0.76639 0.88268 1.90770 1.27534 1.33116 1.78225 0.94588 0.89228 0.97037 0.92743 0.92992 0.90789 0.93231 0.74842 0.87528 0.87632 0.89522 0.86926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.83 37.15 0.33 -2.67 16 2 C 0.27 6.16 2.63 -69.08 -0.18 5.97 16 3 H 0.06 1.47 7.00 -51.93 -0.36 1.10 16 4 C -0.52 -13.48 8.31 -34.44 -0.29 -13.77 16 5 H 0.06 1.67 7.38 -52.49 -0.39 1.29 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.98 11.39 55.43 0.63 -23.35 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.99 -19.36 3.12 -115.85 -0.36 -19.72 16 13 C 0.11 1.81 9.26 59.85 0.55 2.37 16 14 S 2.77 53.04 6.01 -107.50 -0.65 52.40 16 15 O -0.98 -20.69 16.78 -57.17 -0.96 -21.65 16 16 O -0.97 -22.02 16.84 -57.17 -0.96 -22.99 16 17 N -1.11 -15.63 5.53 -4.87 -0.03 -15.65 16 18 C 0.10 1.22 3.60 -67.91 -0.24 0.98 16 19 H 0.12 1.39 6.85 -51.93 -0.36 1.04 16 20 C -0.16 -1.19 6.94 -25.24 -0.18 -1.36 16 21 C 0.05 0.35 7.84 37.88 0.30 0.64 16 22 O -0.35 -4.12 11.17 -39.74 -0.44 -4.57 16 23 C 0.47 6.61 8.14 36.40 0.30 6.90 16 24 O -0.42 -7.66 18.00 -18.32 -0.33 -7.99 16 25 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 26 H 0.09 2.09 6.26 -51.93 -0.33 1.76 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 29 H 0.05 0.91 8.02 -51.93 -0.42 0.49 16 30 H 0.07 1.18 6.81 -51.93 -0.35 0.82 16 31 H 0.05 0.71 6.59 -51.93 -0.34 0.37 16 32 H 0.42 4.92 8.74 -34.47 -0.30 4.62 16 33 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.11 0.71 7.84 -51.93 -0.41 0.30 16 35 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -34.70 313.99 -7.34 -42.04 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.45 Total: 0.47 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 0.49 Total: 0.64 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.24 Total: -58.72 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -2.70 Total: -57.19 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -0.65 Total: 52.40 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.70 -7.34 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800891709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.356 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds