Wall clock time and date at job start Tue Mar 31 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 H 1.08994 * 109.11639 * 40.69938 * 12 10 9 14 14 C 1.53680 * 109.13221 * 281.52916 * 12 10 9 15 15 S 1.82201 * 103.27310 * 239.53074 * 14 12 10 16 16 C 1.76762 * 95.67586 * 0.02562 * 15 14 12 17 17 C 1.47869 * 125.01535 * 180.02562 * 16 15 14 18 18 C 1.39520 * 120.17239 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.91851 * 179.97438 * 18 17 16 20 20 C 1.38480 * 120.27372 * 359.97438 * 19 18 17 21 21 C 1.38097 * 120.34944 * 359.97438 * 20 19 18 22 22 C 1.38669 * 120.07648 * 359.74576 * 21 20 19 23 23 O 1.35729 * 120.14181 * 180.25610 * 22 21 20 24 24 N 1.28304 * 109.92365 * 0.05570 * 16 15 14 25 25 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 27 27 H 1.08997 * 110.65493 * 357.97730 * 14 12 10 28 28 H 1.08991 * 110.65769 * 120.91489 * 14 12 10 29 29 H 1.08003 * 120.04323 * 359.97438 * 18 17 16 30 30 H 1.07995 * 119.86447 * 180.02562 * 19 18 17 31 31 H 1.07997 * 119.82438 * 179.97438 * 20 19 18 32 32 H 1.07998 * 119.96585 * 180.02562 * 21 20 19 33 33 H 0.96697 * 114.00005 * 270.25568 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 1 0.3895 -4.7780 -0.6918 14 6 0.7403 -5.1619 1.4004 15 16 1.5264 -6.7573 1.7959 16 6 2.3737 -6.9218 0.2533 17 6 3.2474 -8.0554 -0.1182 18 6 3.4555 -9.1036 0.7788 19 6 4.2708 -10.1584 0.4268 20 6 4.8844 -10.1825 -0.8144 21 6 4.6854 -9.1515 -1.7113 22 6 3.8637 -8.0864 -1.3746 23 8 3.6630 -7.0748 -2.2571 24 7 2.1187 -5.9116 -0.4955 25 1 -0.4849 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0068 27 1 1.0684 -4.3888 2.0952 28 1 -0.3458 -5.2520 1.4123 29 1 2.9786 -9.0889 1.7477 30 1 4.4309 -10.9695 1.1216 31 1 5.5218 -11.0121 -1.0824 32 1 5.1666 -9.1768 -2.6778 33 1 4.3022 -6.3533 -2.1803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816954918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:23 Heat of formation + Delta-G solvation = -46.614529 kcal Electronic energy + Delta-G solvation = -20161.420221 eV Core-core repulsion = 16891.903673 eV Total energy + Delta-G solvation = -3269.516547 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00975 -40.51889 -38.08636 -37.52824 -36.05997 -33.82898 -33.10309 -31.26244 -30.33922 -27.57196 -26.29698 -24.28510 -23.61318 -21.87660 -20.90101 -20.09043 -19.19151 -18.59842 -18.29201 -17.10470 -16.73080 -16.52552 -16.42419 -16.04320 -15.75916 -15.27388 -14.93387 -14.83387 -14.58560 -13.91993 -13.85773 -13.62276 -13.56617 -13.07803 -12.98391 -12.73560 -12.51218 -12.47380 -12.15394 -12.13998 -11.61823 -11.54317 -10.60219 -10.39605 -10.14201 -9.87288 -9.58090 -8.99778 -8.55273 -6.05887 -0.35065 0.28786 0.30828 0.80519 1.14291 1.32617 1.39509 1.52064 1.81786 2.23004 2.62695 2.71017 3.02455 3.08975 3.32402 3.35576 3.75498 3.93366 4.03130 4.16308 4.20968 4.36338 4.37797 4.43279 4.49809 4.81956 4.95959 5.32596 5.33753 5.38486 5.47167 5.84077 5.85092 6.35374 6.46997 6.77367 6.99670 7.37329 7.91424 8.61163 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.027831 B = 0.003876 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.838939 B = 7222.101816 C = 7838.162290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.339 4.339 8 H 0.080 0.920 9 N -0.555 5.555 10 C 0.451 3.549 11 O -0.619 6.619 12 C 0.063 3.937 13 H 0.134 0.866 14 C -0.100 4.100 15 S -0.190 6.190 16 C 0.234 3.766 17 C -0.100 4.100 18 C -0.074 4.074 19 C -0.127 4.127 20 C -0.071 4.071 21 C -0.156 4.156 22 C 0.136 3.864 23 O -0.496 6.496 24 N -0.490 5.490 25 H 0.281 0.719 26 H 0.399 0.601 27 H 0.100 0.900 28 H 0.149 0.851 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.151 0.849 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 -19.497 1.330 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.468 4.468 8 H 0.098 0.902 9 N -0.191 5.191 10 C 0.237 3.763 11 O -0.505 6.505 12 C -0.054 4.054 13 H 0.151 0.849 14 C -0.251 4.251 15 S 0.041 5.959 16 C -0.063 4.063 17 C -0.105 4.105 18 C -0.095 4.095 19 C -0.144 4.144 20 C -0.090 4.090 21 C -0.175 4.175 22 C 0.087 3.913 23 O -0.308 6.308 24 N -0.202 5.202 25 H 0.091 0.909 26 H 0.233 0.767 27 H 0.119 0.881 28 H 0.167 0.833 29 H 0.155 0.845 30 H 0.185 0.815 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 4.165 -19.835 1.324 20.311 hybrid contribution -0.307 2.380 -0.261 2.414 sum 3.858 -17.455 1.063 17.908 Atomic orbital electron populations 1.69657 1.06841 1.29725 1.49041 1.26077 0.96573 1.02421 0.95610 0.84902 0.77929 0.76576 0.78785 1.19536 1.19164 1.19720 1.19674 0.92755 0.83600 1.50770 0.90241 1.41808 1.09380 1.04218 1.63714 1.19975 0.87798 0.84871 0.83690 1.90491 1.15540 1.87472 1.57015 1.22304 0.95812 0.91671 0.95638 0.84911 1.24905 1.06104 0.96368 0.97761 1.85998 1.57733 1.26711 1.25473 1.25654 0.95546 0.94579 0.90493 1.18716 1.01591 0.94101 0.96086 1.21348 0.97580 0.92216 0.98314 1.21484 0.96606 0.98413 0.97930 1.21667 0.97246 0.97667 0.92394 1.21695 0.98887 0.94622 1.02289 1.18923 0.94690 0.90676 0.86983 1.84700 1.58428 1.32003 1.55632 1.70111 1.14884 1.01634 1.33602 0.90918 0.76675 0.88141 0.83321 0.84467 0.81506 0.81283 0.83113 0.74227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.38 13.05 21.67 0.28 -48.10 16 2 C -0.01 -0.30 5.50 84.93 0.47 0.16 16 3 Si 1.00 42.42 29.55 68.60 2.03 44.45 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.56 -28.76 5.29 -306.97 -1.62 -30.39 16 10 C 0.45 22.59 6.73 87.66 0.59 23.17 16 11 O -0.62 -36.09 16.11 -3.07 -0.05 -36.14 16 12 C 0.06 2.47 3.85 44.83 0.17 2.64 16 13 H 0.13 4.73 8.14 -2.39 -0.02 4.71 16 14 C -0.10 -3.27 7.07 72.21 0.51 -2.76 16 15 S -0.19 -5.93 22.18 -56.49 -1.25 -7.18 16 16 C 0.23 8.27 7.35 87.76 0.64 8.91 16 17 C -0.10 -2.97 5.89 -20.00 -0.12 -3.08 16 18 C -0.07 -1.64 9.59 22.50 0.22 -1.42 16 19 C -0.13 -1.89 10.03 22.24 0.22 -1.67 16 20 C -0.07 -0.99 10.03 22.29 0.22 -0.77 16 21 C -0.16 -3.08 9.98 22.34 0.22 -2.86 16 22 C 0.14 3.82 6.71 22.79 0.15 3.98 16 23 O -0.50 -16.00 11.76 -90.52 -1.06 -17.07 16 24 N -0.49 -19.74 8.32 -323.59 -2.69 -22.43 16 25 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 26 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 27 H 0.10 3.56 7.66 -2.39 -0.02 3.55 16 28 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.14 2.78 7.27 -2.91 -0.02 2.76 16 30 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 31 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.40 11.85 9.06 -74.06 -0.67 11.18 16 Total: -1.00 -72.87 307.79 -0.48 -73.34 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: -0.22 Total: 35.64 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 4.12 Total: 7.87 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -4.03 Total: -100.92 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -1.11 Total: -53.21 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -1.25 Total: -7.18 kcal Total: -72.87 -0.48 -73.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816954918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.730 kcal (2) G-P(sol) polarization free energy of solvation -72.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds