Wall clock time and date at job start Tue Mar 31 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.19500 * 2 1 4 4 C 1.54485 * 110.29002 * 238.08220 * 2 1 3 5 5 C 1.54672 * 101.62774 * 215.61994 * 4 2 1 6 6 H 1.09003 * 110.65376 * 265.83634 * 5 4 2 7 7 N 1.46501 * 110.53700 * 143.12275 * 5 4 2 8 8 S 1.65599 * 120.00418 * 149.02551 * 7 5 4 9 9 O 1.42100 * 106.40241 * 311.46108 * 8 7 5 10 10 O 1.42096 * 106.40379 * 178.53729 * 8 7 5 11 11 N 1.65608 * 107.21718 * 64.99891 * 8 7 5 12 12 C 1.46493 * 119.99916 * 269.72928 * 11 8 7 13 13 C 1.46494 * 119.99583 * 90.00246 * 11 8 7 14 14 C 1.50703 * 109.47225 * 95.00259 * 13 11 8 15 15 H 1.07996 * 120.00066 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99842 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00028 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47156 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46961 * 119.99911 * 18 16 14 21 21 H 1.48490 * 109.47412 * 240.00008 * 18 16 14 22 22 C 1.51328 * 103.94237 * 24.50870 * 5 4 2 23 23 O 1.20827 * 124.95361 * 163.90829 * 22 5 4 24 24 O 1.33830 * 110.09380 * 343.94506 * 22 5 4 25 25 H 1.09007 * 109.46758 * 299.59295 * 1 2 3 26 26 H 1.09000 * 109.47035 * 59.58827 * 1 2 3 27 27 H 1.08997 * 109.47271 * 179.59145 * 1 2 3 28 28 H 1.08996 * 110.99611 * 97.52975 * 4 2 1 29 29 H 1.09000 * 110.99580 * 333.70103 * 4 2 1 30 30 H 0.97001 * 119.99713 * 329.02757 * 7 5 4 31 31 H 1.09000 * 109.47297 * 90.00042 * 12 11 8 32 32 H 1.09002 * 109.47192 * 209.99968 * 12 11 8 33 33 H 1.08996 * 109.47342 * 329.99678 * 12 11 8 34 34 H 1.09005 * 109.47101 * 215.00381 * 13 11 8 35 35 H 1.09001 * 109.47746 * 334.99625 * 13 11 8 36 36 H 0.97002 * 119.99268 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9063 1.0230 0.0000 4 6 2.0657 -0.7661 -1.2299 5 6 3.3289 -1.4438 -0.6491 6 1 4.2124 -0.8326 -0.8335 7 7 3.5030 -2.7816 -1.2202 8 16 5.0239 -3.4065 -1.4172 9 8 5.7926 -2.3971 -2.0571 10 8 4.8552 -4.7117 -1.9529 11 7 5.6732 -3.6014 0.0937 12 6 6.4413 -2.5149 0.7066 13 6 5.4846 -4.8626 0.8148 14 6 6.6742 -5.7577 0.5810 15 1 7.4890 -5.4210 -0.0428 16 6 6.7223 -7.0065 1.1633 17 7 5.7302 -7.4163 1.9233 18 14 8.1965 -8.1164 0.8729 19 1 9.1689 -7.4262 -0.0121 20 1 8.8449 -8.4282 2.1720 21 1 7.7480 -9.3767 0.2285 22 6 3.0453 -1.5329 0.8347 23 8 3.6453 -2.2358 1.6131 24 8 2.0326 -0.7204 1.1588 25 1 -0.3633 0.5075 0.8937 26 1 -0.3633 0.5202 -0.8863 27 1 -0.3634 -1.0276 -0.0073 28 1 2.3262 -0.0790 -2.0349 29 1 1.3454 -1.5097 -1.5710 30 1 2.7273 -3.3015 -1.4830 31 1 5.7704 -1.8725 1.2770 32 1 7.1960 -2.9339 1.3721 33 1 6.9289 -1.9299 -0.0730 34 1 5.3863 -4.6601 1.8814 35 1 4.5821 -5.3560 0.4541 36 1 5.7643 -8.2948 2.3333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914577134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:04 Heat of formation + Delta-G solvation = -150.297176 kcal Electronic energy + Delta-G solvation = -22831.952332 eV Core-core repulsion = 19250.630848 eV Total energy + Delta-G solvation = -3581.321484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.18978 -37.60954 -36.68107 -35.46137 -35.32641 -35.20117 -32.61795 -32.33758 -29.35609 -27.65323 -24.96571 -24.94651 -22.50918 -22.17211 -21.01493 -19.25090 -17.85722 -17.16321 -17.03355 -16.57527 -16.53567 -16.15930 -15.19974 -14.75363 -14.42047 -14.28412 -14.15939 -13.53060 -13.26948 -13.09331 -13.07411 -12.43504 -12.27221 -12.19302 -12.00541 -11.66639 -11.59826 -11.52293 -11.22472 -11.17622 -11.02516 -10.95622 -10.69750 -10.61271 -10.39824 -9.95310 -9.62829 -9.29620 -8.36171 -7.90892 -5.97128 -4.01069 1.14448 2.14871 2.88658 3.36177 3.38296 3.43159 3.49036 3.71157 3.88754 4.13676 4.21272 4.42077 4.51450 4.72753 4.79141 4.93675 5.16908 5.24432 5.35779 5.37434 5.43925 5.66235 5.71189 5.80446 6.21840 6.39262 6.67058 6.70348 6.91938 7.42142 7.53171 7.56357 7.75067 8.00590 8.31513 9.01851 9.63317 11.11340 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.005085 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.865409 B = 5505.140583 C = 5923.528945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 H 0.103 0.897 4 C -0.155 4.155 5 C 0.094 3.906 6 H 0.134 0.866 7 N -1.113 6.113 8 S 2.777 3.223 9 O -0.997 6.997 10 O -0.958 6.958 11 N -0.980 5.980 12 C 0.095 3.905 13 C 0.264 3.736 14 C -0.528 4.528 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.453 3.547 23 O -0.411 6.411 24 O -0.342 6.342 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.417 0.583 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.810 17.652 -5.405 21.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.120 0.880 4 C -0.194 4.194 5 C -0.017 4.017 6 H 0.151 0.849 7 N -0.871 5.871 8 S 2.784 3.216 9 O -0.980 6.980 10 O -0.942 6.942 11 N -0.823 5.823 12 C -0.052 4.052 13 C 0.142 3.858 14 C -0.567 4.567 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C 0.288 3.712 23 O -0.290 6.290 24 O -0.258 6.258 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.250 0.750 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.085 17.084 -5.472 20.580 hybrid contribution 0.210 -0.843 0.108 0.875 sum -9.875 16.241 -5.364 19.750 Atomic orbital electron populations 1.22000 0.92123 1.03782 1.03418 1.23591 0.96182 0.95868 0.82100 0.87959 1.23396 0.96424 1.01150 0.98424 1.22001 1.01967 0.86505 0.91232 0.84893 1.56342 1.28389 1.23876 1.78445 1.02145 0.72699 0.72903 0.73842 1.93522 1.68830 1.61434 1.74261 1.93656 1.85313 1.37447 1.77742 1.57326 1.64687 1.23347 1.36955 1.21399 0.95998 0.89290 0.98487 1.18983 0.96804 0.77157 0.92829 1.21585 1.04850 1.00182 1.30106 0.92186 1.24937 0.96446 0.97698 0.95024 1.69954 1.31334 1.19784 1.32367 0.86468 0.82648 0.80614 0.77842 1.19682 1.21025 1.20893 1.23656 0.78336 0.77999 0.91167 1.90886 1.46463 1.34211 1.57438 1.86824 1.47927 1.53737 1.37353 0.91027 0.90032 0.91305 0.87320 0.88267 0.74987 0.93734 0.90420 0.92143 0.94306 0.94865 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.54 37.16 0.35 -0.47 16 2 C 0.08 0.54 4.25 -25.95 -0.11 0.43 16 3 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.15 -1.07 6.40 -25.07 -0.16 -1.23 16 5 C 0.09 1.09 3.62 -67.89 -0.25 0.84 16 6 H 0.13 1.43 7.58 -51.93 -0.39 1.03 16 7 N -1.11 -15.88 5.63 -4.86 -0.03 -15.91 16 8 S 2.78 54.91 6.09 -107.50 -0.65 54.26 16 9 O -1.00 -20.01 16.11 -57.17 -0.92 -20.93 16 10 O -0.96 -22.84 17.11 -57.17 -0.98 -23.82 16 11 N -0.98 -21.39 2.49 -123.06 -0.31 -21.70 16 12 C 0.09 1.77 10.38 59.84 0.62 2.39 16 13 C 0.26 7.03 5.08 -5.20 -0.03 7.00 16 14 C -0.53 -15.38 9.38 -34.44 -0.32 -15.70 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 18 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.45 6.47 8.27 36.31 0.30 6.77 16 23 O -0.41 -7.67 14.87 -18.44 -0.27 -7.95 16 24 O -0.34 -4.08 10.63 -37.89 -0.40 -4.49 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.60 7.64 -51.93 -0.40 0.20 16 30 H 0.42 5.03 8.64 -34.47 -0.30 4.73 16 31 H 0.04 0.76 6.03 -51.93 -0.31 0.44 16 32 H 0.08 1.49 8.07 -51.93 -0.42 1.07 16 33 H 0.06 1.02 7.02 -51.93 -0.36 0.66 16 34 H 0.04 1.09 8.11 -51.93 -0.42 0.67 16 35 H 0.03 0.94 7.61 -51.93 -0.40 0.54 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -37.39 316.98 -7.42 -44.81 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.66 Total: -1.80 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 0.31 Total: 1.73 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.40 Total: -64.04 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -2.58 Total: -57.19 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.65 Total: 54.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.39 -7.42 -44.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914577134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.484 kcal (2) G-P(sol) polarization free energy of solvation -37.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds