Wall clock time and date at job start Tue Mar 31 2020 03:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.19500 * 2 1 4 4 C 1.54485 * 110.29002 * 238.08220 * 2 1 3 5 5 C 1.54672 * 101.62774 * 215.61994 * 4 2 1 6 6 H 1.09003 * 110.65376 * 265.83634 * 5 4 2 7 7 N 1.46501 * 110.53700 * 143.12275 * 5 4 2 8 8 S 1.65599 * 120.00418 * 149.02551 * 7 5 4 9 9 O 1.42100 * 106.40241 * 311.46108 * 8 7 5 10 10 O 1.42096 * 106.40379 * 178.53729 * 8 7 5 11 11 N 1.65608 * 107.21718 * 64.99891 * 8 7 5 12 12 C 1.46493 * 119.99916 * 269.72928 * 11 8 7 13 13 C 1.46494 * 119.99583 * 90.00246 * 11 8 7 14 14 C 1.50703 * 109.47225 * 95.00259 * 13 11 8 15 15 H 1.07996 * 120.00066 * 359.97438 * 14 13 11 16 16 C 1.37879 * 119.99842 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00028 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99805 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47156 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46961 * 119.99911 * 18 16 14 21 21 H 1.48490 * 109.47412 * 240.00008 * 18 16 14 22 22 C 1.51328 * 103.94237 * 24.50870 * 5 4 2 23 23 O 1.20827 * 124.95361 * 163.90829 * 22 5 4 24 24 O 1.33830 * 110.09380 * 343.94506 * 22 5 4 25 25 H 1.09007 * 109.46758 * 299.59295 * 1 2 3 26 26 H 1.09000 * 109.47035 * 59.58827 * 1 2 3 27 27 H 1.08997 * 109.47271 * 179.59145 * 1 2 3 28 28 H 1.08996 * 110.99611 * 97.52975 * 4 2 1 29 29 H 1.09000 * 110.99580 * 333.70103 * 4 2 1 30 30 H 0.97001 * 119.99713 * 329.02757 * 7 5 4 31 31 H 1.09000 * 109.47297 * 90.00042 * 12 11 8 32 32 H 1.09002 * 109.47192 * 209.99968 * 12 11 8 33 33 H 1.08996 * 109.47342 * 329.99678 * 12 11 8 34 34 H 1.09005 * 109.47101 * 215.00381 * 13 11 8 35 35 H 1.09001 * 109.47746 * 334.99625 * 13 11 8 36 36 H 0.97002 * 119.99268 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9063 1.0230 0.0000 4 6 2.0657 -0.7661 -1.2299 5 6 3.3289 -1.4438 -0.6491 6 1 4.2124 -0.8326 -0.8335 7 7 3.5030 -2.7816 -1.2202 8 16 5.0239 -3.4065 -1.4172 9 8 5.7926 -2.3971 -2.0571 10 8 4.8552 -4.7117 -1.9529 11 7 5.6732 -3.6014 0.0937 12 6 6.4413 -2.5149 0.7066 13 6 5.4846 -4.8626 0.8148 14 6 6.6742 -5.7577 0.5810 15 1 7.4890 -5.4210 -0.0428 16 6 6.7223 -7.0065 1.1633 17 7 5.7302 -7.4163 1.9233 18 14 8.1965 -8.1164 0.8729 19 1 9.1689 -7.4262 -0.0121 20 1 8.8449 -8.4282 2.1720 21 1 7.7480 -9.3767 0.2285 22 6 3.0453 -1.5329 0.8347 23 8 3.6453 -2.2358 1.6131 24 8 2.0326 -0.7204 1.1588 25 1 -0.3633 0.5075 0.8937 26 1 -0.3633 0.5202 -0.8863 27 1 -0.3634 -1.0276 -0.0073 28 1 2.3262 -0.0790 -2.0349 29 1 1.3454 -1.5097 -1.5710 30 1 2.7273 -3.3015 -1.4830 31 1 5.7704 -1.8725 1.2770 32 1 7.1960 -2.9339 1.3721 33 1 6.9289 -1.9299 -0.0730 34 1 5.3863 -4.6601 1.8814 35 1 4.5821 -5.3560 0.4541 36 1 5.7643 -8.2948 2.3333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914577134.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:03 Heat of formation + Delta-G solvation = -180.067113 kcal Electronic energy + Delta-G solvation = -22833.243253 eV Core-core repulsion = 19250.630848 eV Total energy + Delta-G solvation = -3582.612405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.11032 -38.70975 -38.34868 -37.17306 -36.91497 -36.50790 -34.50040 -33.31799 -30.19686 -29.66974 -26.79164 -25.70871 -24.21228 -23.22889 -21.95694 -20.62571 -19.17600 -18.66843 -18.37699 -18.06885 -17.93708 -17.60438 -16.90146 -16.28485 -15.72532 -15.41238 -15.04060 -14.97036 -14.88367 -14.24529 -14.01433 -13.93972 -13.68404 -13.36350 -13.23860 -13.05197 -12.95502 -12.94369 -12.93029 -12.74260 -12.49456 -12.42471 -12.25876 -11.99319 -11.90401 -11.70571 -11.39915 -10.61311 -10.43865 -9.73181 -8.19788 -6.33241 -0.40596 1.04140 1.38159 1.39979 1.52682 1.88429 2.18470 2.39463 2.53497 2.82196 3.10087 3.19136 3.36513 3.67043 3.80400 3.98277 4.10511 4.27944 4.43006 4.74447 4.76954 4.79981 4.85843 4.92697 5.06207 5.08124 5.24335 5.32434 5.48495 5.69298 5.75340 5.86499 6.00380 6.10700 6.47752 6.76720 7.35771 8.88280 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.005085 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.865409 B = 5505.140583 C = 5923.528945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.071 3.929 3 H 0.134 0.866 4 C -0.142 4.142 5 C 0.086 3.914 6 H 0.147 0.853 7 N -1.099 6.099 8 S 2.796 3.204 9 O -0.998 6.998 10 O -1.004 7.004 11 N -0.992 5.992 12 C 0.093 3.907 13 C 0.286 3.714 14 C -0.549 4.549 15 H 0.056 0.944 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.963 3.037 19 H -0.267 1.267 20 H -0.271 1.271 21 H -0.277 1.277 22 C 0.452 3.548 23 O -0.469 6.469 24 O -0.357 6.357 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.057 0.943 28 H 0.146 0.854 29 H 0.110 0.890 30 H 0.428 0.572 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.014 0.986 35 H 0.008 0.992 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 19.473 -6.889 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.016 3.984 3 H 0.151 0.849 4 C -0.180 4.180 5 C -0.024 4.024 6 H 0.164 0.836 7 N -0.861 5.861 8 S 2.804 3.196 9 O -0.981 6.981 10 O -0.988 6.988 11 N -0.833 5.833 12 C -0.052 4.052 13 C 0.162 3.838 14 C -0.588 4.588 15 H 0.074 0.926 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.203 1.203 22 C 0.290 3.710 23 O -0.353 6.353 24 O -0.273 6.273 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.076 0.924 28 H 0.164 0.836 29 H 0.129 0.871 30 H 0.264 0.736 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.538 18.950 -6.972 22.776 hybrid contribution 0.195 -1.240 0.557 1.373 sum -10.342 17.711 -6.415 21.489 Atomic orbital electron populations 1.22059 0.90757 1.03549 1.04827 1.24117 0.97255 0.96690 0.80309 0.84870 1.23543 0.93819 1.01576 0.99088 1.22383 1.05137 0.85169 0.89721 0.83580 1.55794 1.26875 1.25278 1.78202 1.01347 0.73384 0.72011 0.72858 1.93514 1.69710 1.60924 1.73947 1.93591 1.86282 1.40314 1.78595 1.57247 1.66303 1.22628 1.37136 1.21519 0.95923 0.88693 0.99096 1.18385 0.94990 0.78764 0.91663 1.21920 1.05517 1.01166 1.30209 0.92594 1.25849 0.99452 0.99234 0.94609 1.70065 1.33216 1.20439 1.33076 0.85435 0.79065 0.78440 0.78311 1.19077 1.19618 1.20291 1.24088 0.77932 0.77107 0.91856 1.90855 1.48691 1.36726 1.59053 1.86805 1.46956 1.53349 1.40185 0.91261 0.86941 0.92413 0.83596 0.87139 0.73572 0.92235 0.91620 0.90069 0.96757 0.97355 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.54 71.98 0.69 -0.44 16 2 C 0.07 0.74 4.25 31.10 0.13 0.87 16 3 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 4 C -0.14 -1.39 6.40 31.67 0.20 -1.18 16 5 C 0.09 1.81 3.62 45.01 0.16 1.97 16 6 H 0.15 2.73 7.58 -2.39 -0.02 2.71 16 7 N -1.10 -30.22 5.63 -169.29 -0.95 -31.17 16 8 S 2.80 110.29 6.09 -56.49 -0.34 109.95 16 9 O -1.00 -38.63 16.11 -128.00 -2.06 -40.69 16 10 O -1.00 -48.77 17.11 -128.00 -2.19 -50.96 16 11 N -0.99 -44.27 2.49 -543.25 -1.35 -45.62 16 12 C 0.09 3.51 10.38 127.77 1.33 4.84 16 13 C 0.29 15.87 5.08 85.64 0.43 16.30 16 14 C -0.55 -32.83 9.38 25.60 0.24 -32.59 16 15 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 16 C 0.01 0.45 5.46 84.66 0.46 0.91 16 17 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 18 Si 0.96 46.41 29.54 68.60 2.03 48.43 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 22 C 0.45 12.69 8.27 71.44 0.59 13.29 16 23 O -0.47 -18.12 14.87 21.66 0.32 -17.80 16 24 O -0.36 -8.06 10.63 -47.94 -0.51 -8.57 16 25 H 0.07 0.56 8.14 -2.38 -0.02 0.55 16 26 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.11 0.89 7.64 -2.39 -0.02 0.87 16 30 H 0.43 9.89 8.64 -96.74 -0.84 9.06 16 31 H 0.06 2.05 6.03 -2.39 -0.01 2.04 16 32 H 0.06 2.58 8.07 -2.39 -0.02 2.57 16 33 H 0.08 2.67 7.02 -2.39 -0.02 2.65 16 34 H 0.01 0.85 8.11 -2.38 -0.02 0.83 16 35 H 0.01 0.50 7.61 -2.39 -0.02 0.48 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -83.89 316.98 -0.27 -84.16 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.27 Total: 5.62 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.24 Total: 3.96 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -2.02 Total: -134.11 kcal Atomic # 8 Polarization: -113.57 SS G_CDS: -4.44 Total: -118.01 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 110.29 SS G_CDS: -0.34 Total: 109.95 kcal Total: -83.89 -0.27 -84.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914577134.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.908 kcal (2) G-P(sol) polarization free energy of solvation -83.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds