Wall clock time and date at job start Tue Mar 31 2020 02:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46882 * 240.00214 * 3 2 1 5 5 H 1.48505 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47420 * 119.99871 * 3 2 1 7 7 C 1.38810 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99641 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99919 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47206 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47119 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99843 * 180.02562 * 12 11 10 14 14 O 1.21537 * 120.00261 * 359.97438 * 13 12 11 15 15 C 1.47866 * 119.99827 * 179.97438 * 13 12 11 16 16 N 1.29001 * 124.85121 * 0.02562 * 15 13 12 17 17 C 1.33156 * 118.20885 * 179.97438 * 16 15 13 18 18 C 1.41369 * 129.83668 * 179.97438 * 17 16 15 19 19 N 1.31013 * 120.67059 * 180.02562 * 18 17 16 20 20 C 1.32365 * 122.68156 * 359.97438 * 19 18 17 21 21 C 1.36529 * 121.01553 * 0.05622 * 20 19 18 22 22 C 1.39655 * 119.13829 * 359.95566 * 21 20 19 23 23 S 1.75909 * 132.42813 * 179.97438 * 22 21 20 24 24 H 0.96999 * 120.00362 * 359.97438 * 1 2 3 25 25 H 0.97002 * 120.00050 * 0.02562 * 9 7 2 26 26 H 1.09008 * 109.46689 * 60.00245 * 10 9 7 27 27 H 1.09002 * 109.47558 * 300.00597 * 10 9 7 28 28 H 1.08997 * 109.46524 * 60.00066 * 11 10 9 29 29 H 1.08996 * 109.46982 * 300.00477 * 11 10 9 30 30 H 0.97002 * 120.00122 * 359.97438 * 12 11 10 31 31 H 1.07999 * 119.66022 * 0.04835 * 18 17 16 32 32 H 1.07994 * 119.49087 * 180.02562 * 20 19 18 33 33 H 1.07991 * 120.43160 * 180.22716 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8198 0.0012 12 7 1.7964 -6.0884 0.0018 13 6 1.1225 -7.2556 0.0019 14 8 -0.0928 -7.2557 0.0020 15 6 1.8619 -8.5361 0.0020 16 7 3.1473 -8.6452 0.0024 17 6 3.6752 -9.8676 0.0029 18 6 5.0309 -10.2686 0.0029 19 7 5.3521 -11.5387 0.0030 20 6 4.4473 -12.5048 0.0035 21 6 3.1124 -12.2184 0.0029 22 6 2.7034 -10.8831 0.0026 23 16 1.1143 -10.1286 0.0012 24 1 -0.4851 0.8400 0.0004 25 1 0.3556 -2.3880 -0.0002 26 1 2.6848 -3.7145 0.8906 27 1 2.6849 -3.7146 -0.8894 28 1 0.4370 -4.7621 -0.8886 29 1 0.4376 -4.7618 0.8913 30 1 2.7664 -6.0884 0.0014 31 1 5.8096 -9.5202 0.0033 32 1 4.7699 -13.5354 0.0039 33 1 2.3822 -13.0141 0.0070 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131148115.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:07 Heat of formation + Delta-G solvation = 51.983190 kcal Electronic energy + Delta-G solvation = -19096.905305 eV Core-core repulsion = 15863.957026 eV Total energy + Delta-G solvation = -3232.948278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 292.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.34374 -39.84329 -37.99394 -35.85169 -33.97166 -32.66318 -31.52952 -30.81407 -28.10043 -26.30509 -24.76914 -23.60059 -22.86867 -21.57073 -20.60631 -19.18799 -18.08193 -17.60532 -17.20356 -16.34198 -16.05191 -15.73450 -15.18712 -15.12281 -14.72695 -14.56003 -14.02178 -14.00452 -13.23605 -13.15185 -13.08565 -12.90811 -12.06581 -11.55596 -11.16903 -11.11957 -10.92390 -10.83148 -10.81192 -10.25040 -10.15675 -10.12062 -9.77841 -9.58176 -9.13552 -8.91602 -8.85367 -7.02334 -5.81374 -3.12463 -0.53468 0.44539 0.51317 1.07718 1.43264 2.76823 2.77990 3.24333 3.41573 3.42349 3.47119 3.48348 3.83749 3.96881 4.31050 4.41883 4.57638 4.77376 5.08144 5.18682 5.30035 5.41294 5.46713 5.68509 5.83669 5.87842 6.02333 6.30120 6.60806 6.64042 6.77795 7.30906 7.36691 7.64244 7.90453 8.35989 9.47424 10.00934 10.35789 11.41063 Molecular weight = 292.07amu Principal moments of inertia in cm(-1) A = 0.034083 B = 0.002596 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.322575 B =10784.388435 C =11585.264705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.109 3.891 12 N -0.689 5.689 13 C 0.589 3.411 14 O -0.518 6.518 15 C 0.067 3.933 16 N -0.418 5.418 17 C 0.025 3.975 18 C 0.196 3.804 19 N -0.476 5.476 20 C 0.105 3.895 21 C -0.123 4.123 22 C -0.158 4.158 23 S 0.184 5.816 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.412 0.588 31 H 0.177 0.823 32 H 0.169 0.831 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -27.268 0.008 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.016 3.984 11 C -0.015 4.015 12 N -0.340 5.340 13 C 0.368 3.632 14 O -0.393 6.393 15 C -0.218 4.218 16 N -0.135 5.135 17 C -0.102 4.102 18 C 0.024 3.976 19 N -0.185 5.185 20 C -0.045 4.045 21 C -0.147 4.147 22 C -0.284 4.284 23 S 0.441 5.559 24 H 0.067 0.933 25 H 0.220 0.780 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.248 0.752 31 H 0.194 0.806 32 H 0.186 0.814 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.271 -27.239 0.007 27.951 hybrid contribution 0.575 0.910 -0.001 1.077 sum 6.846 -26.328 0.006 27.204 Atomic orbital electron populations 1.69655 1.05153 1.26018 1.57063 1.24783 0.95577 0.97841 1.02575 0.86215 0.78494 0.83229 0.77896 1.21161 1.21610 1.21154 1.19144 0.91043 0.83781 1.43644 0.91015 1.42163 1.05992 0.99469 1.89799 1.20764 0.93388 0.85453 0.98815 1.21784 0.95634 0.80786 1.03247 1.45718 1.11450 1.05043 1.71807 1.16817 0.86291 0.81656 0.78400 1.90884 1.11974 1.86389 1.50021 1.27509 0.91412 0.98966 1.03863 1.65826 1.10623 1.24692 1.12370 1.20138 0.96924 0.86247 1.06868 1.22906 0.91330 0.92915 0.90401 1.67532 1.38182 1.00198 1.12562 1.22474 0.88305 0.99285 0.94463 1.21106 0.98140 0.93355 1.02136 1.24615 0.98366 0.99770 1.05656 1.85288 1.02343 0.97733 1.70552 0.93281 0.77963 0.95500 0.95501 0.90498 0.90498 0.75208 0.80642 0.81372 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.25 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.20 5.60 -59.90 -0.34 -18.54 16 10 C 0.14 2.75 6.37 -4.04 -0.03 2.73 16 11 C 0.11 1.79 5.79 -4.04 -0.02 1.77 16 12 N -0.69 -9.60 5.55 -61.25 -0.34 -9.94 16 13 C 0.59 8.55 7.83 -12.32 -0.10 8.45 16 14 O -0.52 -8.93 16.91 5.33 0.09 -8.84 16 15 C 0.07 0.83 7.41 -14.80 -0.11 0.72 16 16 N -0.42 -4.89 10.08 -8.53 -0.09 -4.97 16 17 C 0.02 0.26 6.99 -85.23 -0.60 -0.34 16 18 C 0.20 1.72 11.30 -16.71 -0.19 1.54 16 19 N -0.48 -4.11 10.28 -12.92 -0.13 -4.24 16 20 C 0.10 0.69 11.12 -17.94 -0.20 0.49 16 21 C -0.12 -0.83 10.09 -39.67 -0.40 -1.23 16 22 C -0.16 -1.49 6.62 -38.18 -0.25 -1.74 16 23 S 0.18 1.87 23.17 -107.50 -2.49 -0.62 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.39 10.16 7.67 -40.82 -0.31 9.85 16 26 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.41 5.00 8.10 -40.82 -0.33 4.67 16 31 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 33 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -32.76 313.19 -8.16 -40.92 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -3.15 Total: 6.61 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.14 Total: 5.04 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.17 Total: -64.98 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.49 Total: -0.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.76 -8.16 -40.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131148115.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.908 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds