Wall clock time and date at job start Tue Mar 31 2020 02:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99574 * 2 1 4 4 H 1.48499 * 109.47022 * 269.99557 * 3 2 1 5 5 H 1.48498 * 109.47405 * 30.00235 * 3 2 1 6 6 H 1.48509 * 109.46837 * 149.99793 * 3 2 1 7 7 C 1.38805 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00093 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00269 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00106 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46953 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21624 * 120.00266 * 359.97438 * 13 12 11 15 15 C 1.47166 * 119.99777 * 180.02562 * 13 12 11 16 16 C 1.38400 * 126.88320 * 180.02562 * 15 13 12 17 17 C 1.39676 * 105.36094 * 179.97438 * 16 15 13 18 18 C 1.50699 * 126.06907 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47150 * 89.99686 * 18 17 16 20 20 F 1.39901 * 109.46822 * 209.99510 * 18 17 16 21 21 F 1.39899 * 109.47160 * 329.99522 * 18 17 16 22 22 N 1.30865 * 107.85729 * 359.97438 * 17 16 15 23 23 N 1.28442 * 110.92938 * 359.71714 * 22 17 16 24 24 H 0.97000 * 125.19111 * 180.27693 * 23 22 17 25 25 H 0.97000 * 120.00140 * 0.02562 * 1 2 3 26 26 H 0.96994 * 119.99386 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47062 * 60.00763 * 10 9 7 28 28 H 1.08996 * 109.47565 * 300.00227 * 10 9 7 29 29 H 1.09001 * 109.47289 * 60.00079 * 11 10 9 30 30 H 1.09004 * 109.47261 * 300.00335 * 11 10 9 31 31 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 32 32 H 1.08000 * 127.32330 * 359.97228 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0000 12 7 6.3490 -3.4599 -0.0006 13 6 7.6967 -3.4598 -0.0002 14 8 8.3048 -2.4065 0.0002 15 6 8.4326 -4.7343 -0.0014 16 6 9.8066 -4.9001 -0.0007 17 6 10.0126 -6.2816 -0.0018 18 6 11.3482 -6.9796 -0.0021 19 9 11.7612 -7.1966 1.3168 20 9 11.2325 -8.2074 -0.6625 21 9 12.2906 -6.1827 -0.6608 22 7 8.8397 -6.8622 -0.0025 23 7 7.8963 -5.9906 0.0040 24 1 6.9478 -6.1935 0.0086 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3620 -0.0004 27 1 3.8486 -3.0425 -0.8898 28 1 3.8492 -3.0422 0.8901 29 1 5.8797 -1.6195 0.8900 30 1 5.8797 -1.6195 -0.8900 31 1 5.8639 -4.2999 -0.0013 32 1 10.5596 -4.1259 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135298247.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:57 Heat of formation + Delta-G solvation = -120.765620 kcal Electronic energy + Delta-G solvation = -22074.824235 eV Core-core repulsion = 17849.775395 eV Total energy + Delta-G solvation = -4225.048840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.20640 -48.73278 -48.70673 -44.07549 -40.71078 -37.53621 -35.75232 -33.99616 -33.42800 -32.44812 -29.90466 -27.77658 -25.96039 -24.30145 -23.17805 -22.68674 -22.01298 -20.45931 -19.76532 -19.60899 -19.35664 -18.63551 -17.31179 -17.27764 -16.92010 -16.47432 -16.43499 -15.66105 -15.57334 -15.52477 -15.17319 -15.14496 -15.13036 -14.99279 -14.84842 -14.80641 -14.64113 -13.58912 -13.47004 -13.24705 -12.73693 -12.67507 -12.51298 -12.08243 -11.83136 -11.53552 -11.10461 -11.03933 -10.67428 -10.30152 -9.36367 -8.05096 -5.40738 -0.15370 0.68672 1.07476 1.40370 1.42313 1.48989 1.54264 1.85837 1.88362 2.47379 2.50068 2.80606 3.27191 3.29437 3.33476 3.63691 3.74809 3.86856 4.03209 4.15761 4.18554 4.54253 4.82441 4.90283 5.08061 5.14801 5.50525 5.72776 6.16467 6.19391 6.34496 6.83343 7.04218 7.78333 7.94726 9.15550 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.048060 B = 0.002464 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.462305 B =11360.314673 C =11757.676093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.250 1.250 7 C -0.237 4.237 8 H 0.064 0.936 9 N -0.759 5.759 10 C 0.147 3.853 11 C 0.121 3.879 12 N -0.701 5.701 13 C 0.596 3.404 14 O -0.550 6.550 15 C -0.024 4.024 16 C -0.109 4.109 17 C -0.081 4.081 18 C 0.567 3.433 19 F -0.170 7.170 20 F -0.171 7.171 21 F -0.163 7.163 22 N -0.213 5.213 23 N -0.332 5.332 24 H 0.471 0.529 25 H 0.259 0.741 26 H 0.368 0.632 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.415 0.585 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.707 -15.698 0.011 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.174 1.174 7 C -0.368 4.368 8 H 0.082 0.918 9 N -0.405 5.405 10 C 0.021 3.979 11 C -0.003 4.003 12 N -0.354 5.354 13 C 0.381 3.619 14 O -0.426 6.426 15 C -0.152 4.152 16 C -0.138 4.138 17 C -0.238 4.238 18 C 0.510 3.490 19 F -0.152 7.152 20 F -0.152 7.152 21 F -0.144 7.144 22 N -0.051 5.051 23 N -0.054 5.054 24 H 0.322 0.678 25 H 0.068 0.932 26 H 0.201 0.799 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 23.448 -16.054 0.014 28.417 hybrid contribution -0.293 1.265 0.002 1.299 sum 23.155 -14.789 0.016 27.475 Atomic orbital electron populations 1.69869 1.07136 1.26834 1.59258 1.25505 0.96095 1.01341 1.02373 0.85452 0.78760 0.79675 0.78171 1.20410 1.22381 1.17426 1.18989 0.82254 0.93714 1.41824 0.91813 1.42525 1.02707 1.04013 1.91291 1.20865 0.88581 0.88355 1.00125 1.21378 0.90735 0.85331 1.02840 1.45508 1.05128 1.10688 1.74040 1.16866 0.81931 0.86438 0.76698 1.90886 1.68725 1.32103 1.50911 1.21515 0.93894 0.86269 1.13513 1.22109 0.94828 0.95089 1.01756 1.21708 0.92805 0.93396 1.15889 1.16614 0.82318 0.76010 0.74013 1.93251 1.91257 1.94754 1.35903 1.93233 1.96112 1.44879 1.80974 1.93243 1.66491 1.73726 1.80972 1.73057 0.96212 1.20297 1.15545 1.43793 1.10226 1.01707 1.49715 0.67843 0.93230 0.79918 0.93757 0.93857 0.91124 0.91014 0.74783 0.79450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.98 13.97 21.65 0.30 -60.67 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.95 43.75 27.73 68.60 1.90 45.65 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.25 -10.28 6.52 99.48 0.65 -9.63 16 7 C -0.24 -12.74 10.47 84.03 0.88 -11.86 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 9 N -0.76 -32.32 5.41 -343.47 -1.86 -34.18 16 10 C 0.15 4.50 6.37 86.38 0.55 5.05 16 11 C 0.12 3.00 5.79 86.38 0.50 3.50 16 12 N -0.70 -12.31 5.55 -466.62 -2.59 -14.90 16 13 C 0.60 12.30 7.80 86.59 0.68 12.97 16 14 O -0.55 -15.88 16.92 -4.11 -0.07 -15.95 16 15 C -0.02 -0.38 7.16 40.79 0.29 -0.09 16 16 C -0.11 -1.85 10.48 22.66 0.24 -1.61 16 17 C -0.08 -1.38 6.56 43.05 0.28 -1.10 16 18 C 0.57 9.39 3.55 71.24 0.25 9.64 16 19 F -0.17 -2.94 17.30 44.97 0.78 -2.16 16 20 F -0.17 -3.03 17.26 44.97 0.78 -2.25 16 21 F -0.16 -2.63 17.04 44.97 0.77 -1.86 16 22 N -0.21 -3.44 12.08 -47.49 -0.57 -4.01 16 23 N -0.33 -3.86 6.85 -48.00 -0.33 -4.19 16 24 H 0.47 1.91 8.22 -220.01 -1.81 0.10 16 25 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 26 H 0.37 15.13 5.53 -92.71 -0.51 14.61 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.42 4.24 7.66 -92.71 -0.71 3.53 16 32 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -71.52 302.93 1.38 -70.15 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -1.86 Total: 10.89 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 4.14 Total: 13.49 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -5.05 Total: -117.95 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.07 Total: -15.95 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 2.32 Total: -6.27 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.65 kcal Total: -71.52 1.38 -70.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135298247.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.620 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds