Wall clock time and date at job start Tue Mar 31 2020 03:04:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45206 * 1
3 3 C 1.34641 * 116.99729 * 2 1
4 4 O 1.21514 * 119.99807 * 359.97438 * 3 2 1
5 5 N 1.34772 * 120.00189 * 180.02562 * 3 2 1
6 6 C 1.48219 * 119.97094 * 0.02562 * 5 3 2
7 7 C 1.47189 * 110.35895 * 102.48821 * 6 5 3
8 8 C 1.53801 * 111.83933 * 58.25963 * 7 6 5
9 9 N 1.43465 * 107.96161 * 281.70840 * 8 7 6
10 10 S 1.65599 * 118.93963 * 273.62320 * 9 8 7
11 11 O 1.42098 * 106.40366 * 203.54014 * 10 9 8
12 12 O 1.42100 * 106.40103 * 336.46491 * 10 9 8
13 13 C 1.76200 * 107.21665 * 90.00212 * 10 9 8
14 14 H 1.07996 * 119.99973 * 0.02562 * 13 10 9
15 15 C 1.37872 * 119.99943 * 179.97438 * 13 10 9
16 16 N 1.31515 * 120.00025 * 0.02562 * 15 13 10
17 17 Si 1.86804 * 120.00089 * 180.02562 * 15 13 10
18 18 H 1.48501 * 109.47076 * 0.02562 * 17 15 13
19 19 H 1.48500 * 109.46989 * 120.00042 * 17 15 13
20 20 H 1.48497 * 109.47177 * 240.00331 * 17 15 13
21 21 C 1.48856 * 122.11855 * 93.64905 * 9 8 7
22 22 C 1.43619 * 119.97680 * 180.02562 * 5 3 2
23 23 H 1.09003 * 109.46690 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47051 * 300.00200 * 1 2 3
25 25 H 1.08996 * 109.47264 * 60.00589 * 1 2 3
26 26 H 1.09005 * 109.32310 * 222.73512 * 6 5 3
27 27 H 1.09000 * 109.32243 * 342.37236 * 6 5 3
28 28 H 1.09004 * 108.98466 * 297.66907 * 7 6 5
29 29 H 1.09003 * 109.03396 * 178.88471 * 7 6 5
30 30 H 1.09001 * 109.76559 * 162.09167 * 8 7 6
31 31 H 1.09003 * 109.75659 * 41.32538 * 8 7 6
32 32 H 0.97001 * 119.99780 * 179.97438 * 16 15 13
33 33 H 1.09003 * 109.48097 * 80.57662 * 21 9 8
34 34 H 1.09003 * 109.48070 * 200.59879 * 21 9 8
35 35 H 1.08998 * 108.87722 * 149.90362 * 22 5 3
36 36 H 1.09003 * 108.79425 * 31.40351 * 22 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0633 1.1997 0.0000
4 8 1.4014 2.2187 -0.0005
5 7 3.4091 1.2703 -0.0005
6 6 4.2159 0.0269 -0.0017
7 6 4.7443 -0.2394 -1.3494
8 6 5.6083 0.9237 -1.8652
9 7 4.7279 1.9634 -2.3149
10 16 4.1546 1.9120 -3.8677
11 8 3.8073 3.2463 -4.2115
12 8 5.0816 1.1338 -4.6121
13 6 2.6486 0.9979 -3.8377
14 1 2.2781 0.5981 -2.9053
15 6 1.9426 0.7939 -5.0042
16 7 2.3936 1.2813 -6.1395
17 14 0.3456 -0.1746 -4.9723
18 1 0.0588 -0.6107 -3.5821
19 1 -0.7637 0.6838 -5.4601
20 1 0.4718 -1.3663 -5.8493
21 6 4.3135 3.0870 -1.4308
22 6 4.0605 2.5503 0.0000
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 -0.3633 0.5137 -0.8900
26 1 5.0463 0.1351 0.6961
27 1 3.5899 -0.8094 0.3095
28 1 3.9098 -0.3924 -2.0337
29 1 5.3492 -1.1457 -1.3213
30 1 6.2291 0.5825 -2.6937
31 1 6.2404 1.2985 -1.0601
32 1 1.8970 1.1374 -6.9603
33 1 5.1032 3.8378 -1.4030
34 1 3.3987 3.5357 -1.8179
35 1 5.0159 2.4595 0.5168
36 1 3.4351 3.2624 0.5385
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001192951806.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:04:09
Heat of formation + Delta-G solvation = -154.605788 kcal
Electronic energy + Delta-G solvation = -23831.940448 eV
Core-core repulsion = 20250.432129 eV
Total energy + Delta-G solvation = -3581.508319 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 292.097 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.40933 -38.08587 -36.03838 -35.28502 -34.25807 -33.90991 -33.03220 -32.48411
-28.45992 -26.77596 -26.11892 -25.75820 -22.87779 -21.20687 -19.93733 -18.48775
-17.94945 -17.23128 -16.94386 -16.24562 -16.20828 -15.59044 -15.02953 -14.61173
-14.18926 -13.91070 -13.83068 -13.49758 -13.35911 -12.94177 -12.71511 -12.35886
-12.03194 -11.97908 -11.60394 -11.22230 -11.19563 -11.17425 -10.93083 -10.69636
-10.58153 -10.45937 -10.26487 -10.15637 -10.11009 -9.98224 -9.22022 -8.90320
-8.56779 -8.12998 -6.65948 -5.25912 2.28692 2.45599 3.06208 3.14021
3.15972 3.21088 4.05194 4.09600 4.52972 4.67786 5.02282 5.16121
5.20923 5.32309 5.42145 5.43646 5.48710 5.67346 5.70514 5.72787
5.84178 5.90463 5.99977 6.12957 6.16745 6.23887 6.44194 6.51204
6.68557 6.78259 6.83763 7.36825 7.52865 7.68999 8.03361 8.57809
8.93969 10.27721
Molecular weight = 292.10amu
Principal moments of inertia in cm(-1)
A = 0.013892 B = 0.010383 C = 0.007293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2015.029341 B = 2696.063690 C = 3838.130040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.056 3.944
2 O -0.368 6.368
3 C 0.652 3.348
4 O -0.570 6.570
5 N -0.579 5.579
6 C 0.126 3.874
7 C -0.182 4.182
8 C 0.129 3.871
9 N -1.008 6.008
10 S 2.711 3.289
11 O -1.006 7.006
12 O -1.005 7.005
13 C -1.010 5.010
14 H 0.100 0.900
15 C 0.135 3.865
16 N -0.847 5.847
17 Si 0.915 3.085
18 H -0.262 1.262
19 H -0.272 1.272
20 H -0.271 1.271
21 C 0.108 3.892
22 C 0.122 3.878
23 H 0.098 0.902
24 H 0.059 0.941
25 H 0.065 0.935
26 H 0.072 0.928
27 H 0.086 0.914
28 H 0.089 0.911
29 H 0.080 0.920
30 H 0.090 0.910
31 H 0.068 0.932
32 H 0.289 0.711
33 H 0.071 0.929
34 H 0.091 0.909
35 H 0.080 0.920
36 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.009 -3.947 14.261 14.932
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 O -0.282 6.282
3 C 0.406 3.594
4 O -0.459 6.459
5 N -0.318 5.318
6 C 0.004 3.996
7 C -0.222 4.222
8 C 0.001 3.999
9 N -0.843 5.843
10 S 2.812 3.188
11 O -0.996 6.996
12 O -0.996 6.996
13 C -1.143 5.143
14 H 0.118 0.882
15 C -0.083 4.083
16 N -0.477 5.477
17 Si 0.739 3.261
18 H -0.186 1.186
19 H -0.197 1.197
20 H -0.197 1.197
21 C -0.018 4.018
22 C -0.003 4.003
23 H 0.116 0.884
24 H 0.078 0.922
25 H 0.084 0.916
26 H 0.091 0.909
27 H 0.105 0.895
28 H 0.107 0.893
29 H 0.099 0.901
30 H 0.108 0.892
31 H 0.086 0.914
32 H 0.099 0.901
33 H 0.089 0.911
34 H 0.109 0.891
35 H 0.098 0.902
36 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 2.203 -3.215 13.369 13.925
hybrid contribution -1.483 -0.855 0.157 1.718
sum 0.720 -4.070 13.526 14.143
Atomic orbital electron populations
1.23152 0.74955 1.03107 1.02622 1.86209 1.23770 1.31181 1.87050
1.18033 0.83265 0.82088 0.76008 1.90975 1.64236 1.34950 1.55738
1.46233 1.01994 1.07935 1.75676 1.20795 0.95110 0.85867 0.97793
1.21865 1.02406 0.99765 0.98200 1.20717 0.91892 0.86905 1.00352
1.57648 1.61301 1.32512 1.32815 1.00625 0.75143 0.73856 0.69222
1.93354 1.85499 1.39827 1.80925 1.93341 1.65873 1.72342 1.67998
1.30592 1.30178 1.52320 1.01250 0.88203 1.24710 0.98171 0.91932
0.93442 1.69905 1.38996 1.38987 0.99813 0.86216 0.81077 0.79515
0.79284 1.18560 1.19672 1.19653 1.22431 1.01049 0.88264 0.90105
1.21494 0.97380 0.84091 0.97331 0.88386 0.92232 0.91607 0.90949
0.89517 0.89263 0.90124 0.89222 0.91375 0.90057 0.91064 0.89054
0.90159 0.89247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.78 10.56 101.05 1.07 1.85 16
2 O -0.37 -6.17 9.23 -40.33 -0.37 -6.55 16
3 C 0.65 11.95 8.39 54.05 0.45 12.40 16
4 O -0.57 -11.93 15.67 -19.28 -0.30 -12.23 16
5 N -0.58 -9.04 2.46 -182.42 -0.45 -9.49 16
6 C 0.13 1.60 5.71 -5.89 -0.03 1.56 16
7 C -0.18 -2.72 5.64 -29.11 -0.16 -2.88 16
8 C 0.13 2.08 5.56 -5.23 -0.03 2.05 16
9 N -1.01 -20.24 2.78 -113.20 -0.31 -20.55 16
10 S 2.71 73.15 4.75 -107.50 -0.51 72.64 16
11 O -1.01 -30.18 16.83 -57.17 -0.96 -31.14 16
12 O -1.01 -29.24 16.52 -57.17 -0.94 -30.19 16
13 C -1.01 -28.21 8.84 30.60 0.27 -27.94 16
14 H 0.10 2.65 7.03 -52.49 -0.37 2.28 16
15 C 0.13 3.83 5.46 -17.82 -0.10 3.73 16
16 N -0.85 -25.32 13.19 55.43 0.73 -24.58 16
17 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16
18 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16
19 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
21 C 0.11 1.88 6.54 -1.74 -0.01 1.87 16
22 C 0.12 1.71 5.26 -4.57 -0.02 1.68 16
23 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16
24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
25 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
26 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16
27 H 0.09 1.05 7.05 -51.93 -0.37 0.68 16
28 H 0.09 1.69 6.18 -51.93 -0.32 1.37 16
29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.09 1.56 6.95 -51.93 -0.36 1.20 16
31 H 0.07 0.84 7.59 -51.93 -0.39 0.44 16
32 H 0.29 7.77 8.31 -40.82 -0.34 7.43 16
33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
34 H 0.09 1.86 7.42 -51.93 -0.39 1.48 16
35 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16
36 H 0.09 1.23 7.36 -51.93 -0.38 0.85 16
LS Contribution 308.63 15.07 4.65 4.65
Total: -1.00 -37.86 308.63 -6.71 -44.57
By element:
Atomic # 1 Polarization: 7.16 SS G_CDS: -4.65 Total: 2.51 kcal
Atomic # 6 Polarization: -7.10 SS G_CDS: 1.43 Total: -5.67 kcal
Atomic # 7 Polarization: -54.59 SS G_CDS: -0.03 Total: -54.62 kcal
Atomic # 8 Polarization: -77.52 SS G_CDS: -2.58 Total: -80.10 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal
Atomic # 16 Polarization: 73.15 SS G_CDS: -0.51 Total: 72.64 kcal
Total LS contribution 4.65 Total: 4.65 kcal
Total: -37.86 -6.71 -44.57 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192951806.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -110.036 kcal
(2) G-P(sol) polarization free energy of solvation -37.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.606 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds