Wall clock time and date at job start Tue Mar 31 2020 03:04:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45206 * 1
3 3 C 1.34641 * 116.99729 * 2 1
4 4 O 1.21514 * 119.99807 * 359.97438 * 3 2 1
5 5 N 1.34772 * 120.00189 * 180.02562 * 3 2 1
6 6 C 1.48219 * 119.97094 * 0.02562 * 5 3 2
7 7 C 1.47189 * 110.35895 * 102.48821 * 6 5 3
8 8 C 1.53801 * 111.83933 * 58.25963 * 7 6 5
9 9 N 1.43465 * 107.96161 * 281.70840 * 8 7 6
10 10 S 1.65599 * 118.93963 * 273.62320 * 9 8 7
11 11 O 1.42098 * 106.40366 * 203.54014 * 10 9 8
12 12 O 1.42100 * 106.40103 * 336.46491 * 10 9 8
13 13 C 1.76200 * 107.21665 * 90.00212 * 10 9 8
14 14 H 1.07996 * 119.99973 * 0.02562 * 13 10 9
15 15 C 1.37872 * 119.99943 * 179.97438 * 13 10 9
16 16 N 1.31515 * 120.00025 * 0.02562 * 15 13 10
17 17 Si 1.86804 * 120.00089 * 180.02562 * 15 13 10
18 18 H 1.48501 * 109.47076 * 0.02562 * 17 15 13
19 19 H 1.48500 * 109.46989 * 120.00042 * 17 15 13
20 20 H 1.48497 * 109.47177 * 240.00331 * 17 15 13
21 21 C 1.48856 * 122.11855 * 93.64905 * 9 8 7
22 22 C 1.43619 * 119.97680 * 180.02562 * 5 3 2
23 23 H 1.09003 * 109.46690 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47051 * 300.00200 * 1 2 3
25 25 H 1.08996 * 109.47264 * 60.00589 * 1 2 3
26 26 H 1.09005 * 109.32310 * 222.73512 * 6 5 3
27 27 H 1.09000 * 109.32243 * 342.37236 * 6 5 3
28 28 H 1.09004 * 108.98466 * 297.66907 * 7 6 5
29 29 H 1.09003 * 109.03396 * 178.88471 * 7 6 5
30 30 H 1.09001 * 109.76559 * 162.09167 * 8 7 6
31 31 H 1.09003 * 109.75659 * 41.32538 * 8 7 6
32 32 H 0.97001 * 119.99780 * 179.97438 * 16 15 13
33 33 H 1.09003 * 109.48097 * 80.57662 * 21 9 8
34 34 H 1.09003 * 109.48070 * 200.59879 * 21 9 8
35 35 H 1.08998 * 108.87722 * 149.90362 * 22 5 3
36 36 H 1.09003 * 108.79425 * 31.40351 * 22 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0633 1.1997 0.0000
4 8 1.4014 2.2187 -0.0005
5 7 3.4091 1.2703 -0.0005
6 6 4.2159 0.0269 -0.0017
7 6 4.7443 -0.2394 -1.3494
8 6 5.6083 0.9237 -1.8652
9 7 4.7279 1.9634 -2.3149
10 16 4.1546 1.9120 -3.8677
11 8 3.8073 3.2463 -4.2115
12 8 5.0816 1.1338 -4.6121
13 6 2.6486 0.9979 -3.8377
14 1 2.2781 0.5981 -2.9053
15 6 1.9426 0.7939 -5.0042
16 7 2.3936 1.2813 -6.1395
17 14 0.3456 -0.1746 -4.9723
18 1 0.0588 -0.6107 -3.5821
19 1 -0.7637 0.6838 -5.4601
20 1 0.4718 -1.3663 -5.8493
21 6 4.3135 3.0870 -1.4308
22 6 4.0605 2.5503 0.0000
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 -0.3633 0.5137 -0.8900
26 1 5.0463 0.1351 0.6961
27 1 3.5899 -0.8094 0.3095
28 1 3.9098 -0.3924 -2.0337
29 1 5.3492 -1.1457 -1.3213
30 1 6.2291 0.5825 -2.6937
31 1 6.2404 1.2985 -1.0601
32 1 1.8970 1.1374 -6.9603
33 1 5.1032 3.8378 -1.4030
34 1 3.3987 3.5357 -1.8179
35 1 5.0159 2.4595 0.5168
36 1 3.4351 3.2624 0.5385
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001192951806.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:04:08
Heat of formation + Delta-G solvation = -185.647632 kcal
Electronic energy + Delta-G solvation = -23833.286524 eV
Core-core repulsion = 20250.432129 eV
Total energy + Delta-G solvation = -3582.854395 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 292.097 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.68793 -39.36161 -37.56772 -37.30511 -36.16864 -35.66467 -35.13430 -33.72473
-29.70565 -28.30208 -27.96840 -26.99196 -24.14470 -22.61837 -21.19500 -20.50041
-19.38488 -18.80144 -18.42439 -18.08852 -17.57104 -17.06511 -16.94401 -16.13267
-15.79613 -15.54044 -15.20748 -14.85615 -14.71947 -14.33965 -14.04873 -13.92610
-13.73125 -13.48312 -13.09568 -13.06688 -12.81934 -12.57199 -12.51839 -12.36524
-12.27910 -12.14980 -12.11178 -11.75164 -11.53074 -11.45399 -11.29343 -10.96888
-9.91561 -9.61557 -8.76872 -7.47486 0.32193 1.23417 1.24805 1.26487
1.42339 1.81821 2.15248 2.54310 2.78506 3.00750 3.73534 3.92752
3.98512 4.08961 4.10864 4.30946 4.33931 4.35722 4.51619 4.59230
4.61412 4.66940 4.76933 4.80986 4.87515 4.94163 5.03250 5.19850
5.29053 5.35107 5.48191 5.66616 5.88464 6.12790 6.31262 6.76871
7.27150 8.18172
Molecular weight = 292.10amu
Principal moments of inertia in cm(-1)
A = 0.013892 B = 0.010383 C = 0.007293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2015.029341 B = 2696.063690 C = 3838.130040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.049 3.951
2 O -0.372 6.372
3 C 0.638 3.362
4 O -0.609 6.609
5 N -0.578 5.578
6 C 0.123 3.877
7 C -0.179 4.179
8 C 0.117 3.883
9 N -0.999 5.999
10 S 2.712 3.288
11 O -1.050 7.050
12 O -1.038 7.038
13 C -1.023 5.023
14 H 0.105 0.895
15 C 0.073 3.927
16 N -0.895 5.895
17 Si 0.977 3.023
18 H -0.247 1.247
19 H -0.263 1.263
20 H -0.253 1.253
21 C 0.100 3.900
22 C 0.123 3.877
23 H 0.135 0.865
24 H 0.072 0.928
25 H 0.039 0.961
26 H 0.125 0.875
27 H 0.094 0.906
28 H 0.041 0.959
29 H 0.114 0.886
30 H 0.071 0.929
31 H 0.124 0.876
32 H 0.297 0.703
33 H 0.103 0.897
34 H 0.048 0.952
35 H 0.136 0.864
36 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.626 -5.553 17.088 18.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.045 4.045
2 O -0.285 6.285
3 C 0.393 3.607
4 O -0.501 6.501
5 N -0.316 5.316
6 C 0.003 3.997
7 C -0.219 4.219
8 C -0.009 4.009
9 N -0.838 5.838
10 S 2.814 3.186
11 O -1.040 7.040
12 O -1.028 7.028
13 C -1.156 5.156
14 H 0.123 0.877
15 C -0.140 4.140
16 N -0.527 5.527
17 Si 0.795 3.205
18 H -0.170 1.170
19 H -0.188 1.188
20 H -0.177 1.177
21 C -0.026 4.026
22 C -0.001 4.001
23 H 0.153 0.847
24 H 0.091 0.909
25 H 0.058 0.942
26 H 0.143 0.857
27 H 0.112 0.888
28 H 0.060 0.940
29 H 0.133 0.867
30 H 0.089 0.911
31 H 0.142 0.858
32 H 0.107 0.893
33 H 0.121 0.879
34 H 0.066 0.934
35 H 0.154 0.846
36 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges 2.849 -4.845 16.196 17.144
hybrid contribution -1.599 -0.341 -0.668 1.766
sum 1.251 -5.186 15.528 16.419
Atomic orbital electron populations
1.23425 0.73741 1.05339 1.02036 1.86210 1.25088 1.30440 1.86796
1.18487 0.84332 0.81991 0.75874 1.90941 1.65370 1.36175 1.57585
1.46558 1.01263 1.09531 1.74267 1.21078 0.96322 0.84922 0.97369
1.21844 1.01036 1.00695 0.98358 1.21123 0.91890 0.86450 1.01423
1.57115 1.61571 1.34351 1.30790 1.00154 0.74832 0.72677 0.70949
1.93286 1.86100 1.41649 1.82935 1.93282 1.66363 1.72707 1.70432
1.30872 1.30926 1.52205 1.01628 0.87679 1.25911 1.02229 0.92899
0.92920 1.69990 1.41051 1.40793 1.00861 0.85295 0.76179 0.78558
0.80426 1.17022 1.18753 1.17676 1.22713 1.00290 0.88226 0.91386
1.21672 0.99874 0.83656 0.94876 0.84738 0.90916 0.94167 0.85743
0.88806 0.94021 0.86741 0.91096 0.85820 0.89265 0.87864 0.93362
0.84605 0.89138
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 1.29 10.56 113.37 1.20 2.49 16
2 O -0.37 -11.93 9.23 -55.50 -0.51 -12.45 16
3 C 0.64 22.72 8.39 129.79 1.09 23.81 16
4 O -0.61 -25.61 15.67 19.80 0.31 -25.30 16
5 N -0.58 -16.39 2.46 -961.47 -2.36 -18.75 16
6 C 0.12 2.58 5.71 84.24 0.48 3.06 16
7 C -0.18 -4.82 5.64 29.06 0.16 -4.66 16
8 C 0.12 3.46 5.56 87.21 0.48 3.94 16
9 N -1.00 -39.40 2.78 -512.05 -1.42 -40.82 16
10 S 2.71 151.15 4.75 -56.49 -0.27 150.88 16
11 O -1.05 -65.97 16.83 -128.00 -2.15 -68.12 16
12 O -1.04 -62.52 16.52 -128.00 -2.11 -64.64 16
13 C -1.02 -58.82 8.84 67.73 0.60 -58.22 16
14 H 0.11 5.74 7.03 -2.91 -0.02 5.72 16
15 C 0.07 4.22 5.46 84.65 0.46 4.68 16
16 N -0.89 -55.34 13.19 21.45 0.28 -55.05 16
17 Si 0.98 43.29 29.54 68.60 2.03 45.32 16
18 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16
19 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16
20 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16
21 C 0.10 3.35 6.54 86.57 0.57 3.91 16
22 C 0.12 3.04 5.26 87.56 0.46 3.51 16
23 H 0.13 2.48 8.14 -2.39 -0.02 2.47 16
24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16
25 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16
26 H 0.12 1.42 8.05 -2.38 -0.02 1.40 16
27 H 0.09 1.88 7.05 -2.39 -0.02 1.87 16
28 H 0.04 1.54 6.18 -2.38 -0.01 1.52 16
29 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16
30 H 0.07 2.38 6.95 -2.39 -0.02 2.37 16
31 H 0.12 2.33 7.59 -2.39 -0.02 2.31 16
32 H 0.30 16.50 8.31 -92.71 -0.77 15.73 16
33 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16
34 H 0.05 2.03 7.42 -2.39 -0.02 2.01 16
35 H 0.14 1.90 7.73 -2.39 -0.02 1.88 16
36 H 0.09 2.28 7.36 -2.39 -0.02 2.26 16
Total: -1.00 -88.99 308.63 0.38 -88.60
By element:
Atomic # 1 Polarization: 16.72 SS G_CDS: 1.09 Total: 17.82 kcal
Atomic # 6 Polarization: -22.99 SS G_CDS: 5.50 Total: -17.48 kcal
Atomic # 7 Polarization: -111.12 SS G_CDS: -3.50 Total: -114.62 kcal
Atomic # 8 Polarization: -166.04 SS G_CDS: -4.47 Total: -170.51 kcal
Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal
Atomic # 16 Polarization: 151.15 SS G_CDS: -0.27 Total: 150.88 kcal
Total: -88.99 0.38 -88.60 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001192951806.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -97.045 kcal
(2) G-P(sol) polarization free energy of solvation -88.987 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.032 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) -185.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds