Wall clock time and date at job start Tue Mar 31 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 117.00163 * 2 1 4 4 O 1.20826 * 119.99873 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00145 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.62526 * 10.94558 * 5 3 2 7 7 C 1.53238 * 109.78803 * 250.45833 * 5 3 2 8 8 N 1.46903 * 109.33667 * 186.36328 * 7 5 3 9 9 C 1.46901 * 110.99965 * 187.25308 * 8 7 5 10 10 C 1.46901 * 111.26822 * 63.11034 * 8 7 5 11 11 C 1.53241 * 109.33570 * 296.89235 * 10 8 7 12 12 N 1.47075 * 109.62809 * 131.33185 * 5 3 2 13 13 S 1.65607 * 120.88307 * 351.11332 * 12 5 3 14 14 O 1.42097 * 106.40235 * 196.52397 * 13 12 5 15 15 O 1.42096 * 106.40037 * 329.44446 * 13 12 5 16 16 C 1.76200 * 107.21627 * 82.98320 * 13 12 5 17 17 H 1.08000 * 120.00232 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99608 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00333 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99998 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.46882 * 59.99781 * 20 18 16 22 22 H 1.48497 * 109.47394 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47063 * 300.00235 * 20 18 16 24 24 H 1.08996 * 109.46792 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46967 * 299.99655 * 1 2 3 26 26 H 1.09004 * 109.46764 * 59.99611 * 1 2 3 27 27 H 1.08999 * 109.49582 * 306.32486 * 7 5 3 28 28 H 1.08998 * 109.49239 * 66.40915 * 7 5 3 29 29 H 1.09004 * 109.47463 * 299.65711 * 9 8 7 30 30 H 1.09004 * 109.47195 * 59.65287 * 9 8 7 31 31 H 1.08999 * 109.47307 * 179.65092 * 9 8 7 32 32 H 1.08997 * 109.49670 * 176.93432 * 10 8 7 33 33 H 1.09002 * 109.49624 * 56.85078 * 10 8 7 34 34 H 1.08999 * 109.62987 * 294.11820 * 11 10 8 35 35 H 1.09001 * 109.78656 * 173.63436 * 11 10 8 36 36 H 0.96996 * 120.00209 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9848 0.2873 -0.1940 7 6 4.0587 1.7839 1.3595 8 7 5.5102 2.0020 1.3005 9 6 6.0485 2.3251 2.6286 10 6 5.8530 3.0459 0.3254 11 6 5.4341 2.5886 -1.0759 12 7 4.0123 2.2141 -1.0396 13 16 2.9417 2.8341 -2.1406 14 8 3.7214 3.3666 -3.2025 15 8 1.9428 1.8417 -2.3316 16 6 2.1415 4.2046 -1.3751 17 1 2.3979 4.4838 -0.3638 18 6 1.1880 4.9206 -2.0673 19 7 0.8754 4.5804 -3.2986 20 14 0.3400 6.3741 -1.2561 21 1 1.3536 7.3934 -0.8831 22 1 -0.6362 6.9695 -2.2035 23 1 -0.3717 5.9144 -0.0365 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.5592 2.7226 1.5990 28 1 3.8329 1.0449 2.1283 29 1 5.5781 3.2357 2.9997 30 1 5.8410 1.5037 3.3144 31 1 7.1256 2.4756 2.5573 32 1 6.9284 3.2223 0.3442 33 1 5.3285 3.9672 0.5793 34 1 6.0321 1.7274 -1.3740 35 1 5.5809 3.4005 -1.7882 36 1 0.2049 5.0844 -3.7856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192974013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:04 Heat of formation + Delta-G solvation = -140.823819 kcal Electronic energy + Delta-G solvation = -23812.975831 eV Core-core repulsion = 20232.065143 eV Total energy + Delta-G solvation = -3580.910688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10168 -38.36513 -36.00134 -35.07789 -34.17889 -33.96016 -32.89944 -31.32712 -27.86589 -27.30785 -25.98770 -24.44274 -23.67748 -20.83948 -20.29195 -18.53213 -17.64279 -17.04365 -16.41148 -16.11173 -15.49414 -15.04831 -14.92383 -14.86948 -14.56646 -14.28023 -13.97035 -13.50216 -13.39004 -12.73574 -12.44663 -12.13337 -11.94216 -11.82196 -11.75313 -11.47861 -11.33641 -11.09991 -11.07252 -10.95190 -10.55157 -10.34493 -10.32707 -10.15166 -9.91628 -9.60529 -9.06679 -8.97307 -8.48162 -8.15656 -6.56061 -5.06359 2.15822 2.81361 3.10944 3.16809 3.19102 3.26438 4.00908 4.17005 4.52468 4.78660 5.01869 5.08022 5.17332 5.29115 5.39330 5.50136 5.57486 5.61687 5.64352 5.68223 5.76175 5.81229 5.92068 5.95736 6.03705 6.12453 6.29110 6.32392 6.55643 6.99845 7.05073 7.09288 7.40452 7.48016 8.15874 8.41681 9.05354 10.38778 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.008711 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.436456 B = 3213.706783 C = 3771.270025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.356 6.356 3 C 0.443 3.557 4 O -0.447 6.447 5 C 0.181 3.819 6 H 0.101 0.899 7 C 0.054 3.946 8 N -0.539 5.539 9 C 0.027 3.973 10 C 0.037 3.963 11 C 0.132 3.868 12 N -1.005 6.005 13 S 2.707 3.293 14 O -1.002 7.002 15 O -0.999 6.999 16 C -0.972 4.972 17 H 0.099 0.901 18 C 0.133 3.867 19 N -0.856 5.856 20 Si 0.919 3.081 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.265 1.265 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -5.779 10.845 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.273 6.273 3 C 0.281 3.719 4 O -0.330 6.330 5 C 0.072 3.928 6 H 0.119 0.881 7 C -0.076 4.076 8 N -0.263 5.263 9 C -0.121 4.121 10 C -0.092 4.092 11 C 0.006 3.994 12 N -0.842 5.842 13 S 2.810 3.190 14 O -0.992 6.992 15 O -0.989 6.989 16 C -1.107 5.107 17 H 0.118 0.882 18 C -0.083 4.083 19 N -0.487 5.487 20 Si 0.744 3.256 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.190 1.190 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.173 -6.252 9.627 13.033 hybrid contribution -1.206 1.921 1.140 2.538 sum 4.967 -4.331 10.766 12.623 Atomic orbital electron populations 1.23153 0.76574 1.02532 1.02930 1.86321 1.23232 1.33128 1.84630 1.23170 0.91215 0.82624 0.74869 1.90997 1.66304 1.34564 1.41168 1.20072 0.87419 0.95764 0.89590 0.88098 1.22325 0.88374 1.01417 0.95490 1.61834 1.11876 1.44893 1.07712 1.22355 1.00158 0.99793 0.89833 1.22577 1.00900 0.92932 0.92782 1.21384 0.80722 1.01122 0.96183 1.58409 1.20035 1.58808 1.46925 1.00801 0.71531 0.74982 0.71708 1.93349 1.71759 1.80659 1.53463 1.93327 1.58133 1.62567 1.84861 1.30236 1.35485 1.33107 1.11872 0.88232 1.24666 0.93318 0.96841 0.93430 1.69888 1.29764 1.39254 1.09841 0.86235 0.79098 0.80542 0.79744 1.19154 1.20431 1.18991 0.89016 0.92662 0.90879 0.92735 0.89484 0.95558 0.91359 0.91195 0.89680 0.93555 0.91190 0.88005 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.56 101.05 1.07 1.76 16 2 O -0.36 -6.81 10.57 -39.26 -0.41 -7.22 16 3 C 0.44 9.39 4.51 36.00 0.16 9.55 16 4 O -0.45 -11.04 12.04 -26.36 -0.32 -11.36 16 5 C 0.18 3.32 3.48 -68.65 -0.24 3.08 16 6 H 0.10 1.65 8.14 -51.93 -0.42 1.22 16 7 C 0.05 0.81 4.90 -3.70 -0.02 0.79 16 8 N -0.54 -7.23 4.88 -242.60 -1.18 -8.41 16 9 C 0.03 0.27 9.58 60.07 0.58 0.85 16 10 C 0.04 0.53 5.62 -3.70 -0.02 0.50 16 11 C 0.13 2.24 6.57 -3.60 -0.02 2.22 16 12 N -1.01 -21.11 3.32 -107.43 -0.36 -21.47 16 13 S 2.71 74.22 4.35 -107.50 -0.47 73.75 16 14 O -1.00 -29.66 16.59 -57.17 -0.95 -30.61 16 15 O -1.00 -29.47 14.45 -66.58 -0.96 -30.44 16 16 C -0.97 -27.74 7.27 30.60 0.22 -27.52 16 17 H 0.10 2.70 7.72 -52.49 -0.41 2.29 16 18 C 0.13 3.87 5.46 -17.82 -0.10 3.77 16 19 N -0.86 -26.02 13.19 55.43 0.73 -25.29 16 20 Si 0.92 21.80 29.54 -169.99 -5.02 16.78 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 26 H 0.07 1.41 8.13 -51.93 -0.42 0.98 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.82 7.03 -51.93 -0.36 1.45 16 36 H 0.29 7.94 8.31 -40.82 -0.34 7.60 16 LS Contribution 308.78 15.07 4.65 4.65 Total: -1.00 -36.90 308.78 -7.63 -44.53 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.97 Total: 0.08 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 1.63 Total: -4.99 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.81 Total: -55.17 kcal Atomic # 8 Polarization: -76.98 SS G_CDS: -2.64 Total: -79.63 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 74.22 SS G_CDS: -0.47 Total: 73.75 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.90 -7.63 -44.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192974013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.293 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds