Wall clock time and date at job start Tue Mar 31 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 117.00163 * 2 1 4 4 O 1.20826 * 119.99873 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00145 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.62526 * 10.94558 * 5 3 2 7 7 C 1.53238 * 109.78803 * 250.45833 * 5 3 2 8 8 N 1.46903 * 109.33667 * 186.36328 * 7 5 3 9 9 C 1.46901 * 110.99965 * 187.25308 * 8 7 5 10 10 C 1.46901 * 111.26822 * 63.11034 * 8 7 5 11 11 C 1.53241 * 109.33570 * 296.89235 * 10 8 7 12 12 N 1.47075 * 109.62809 * 131.33185 * 5 3 2 13 13 S 1.65607 * 120.88307 * 351.11332 * 12 5 3 14 14 O 1.42097 * 106.40235 * 196.52397 * 13 12 5 15 15 O 1.42096 * 106.40037 * 329.44446 * 13 12 5 16 16 C 1.76200 * 107.21627 * 82.98320 * 13 12 5 17 17 H 1.08000 * 120.00232 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99608 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00333 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99998 * 180.02562 * 18 16 13 21 21 H 1.48507 * 109.46882 * 59.99781 * 20 18 16 22 22 H 1.48497 * 109.47394 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47063 * 300.00235 * 20 18 16 24 24 H 1.08996 * 109.46792 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46967 * 299.99655 * 1 2 3 26 26 H 1.09004 * 109.46764 * 59.99611 * 1 2 3 27 27 H 1.08999 * 109.49582 * 306.32486 * 7 5 3 28 28 H 1.08998 * 109.49239 * 66.40915 * 7 5 3 29 29 H 1.09004 * 109.47463 * 299.65711 * 9 8 7 30 30 H 1.09004 * 109.47195 * 59.65287 * 9 8 7 31 31 H 1.08999 * 109.47307 * 179.65092 * 9 8 7 32 32 H 1.08997 * 109.49670 * 176.93432 * 10 8 7 33 33 H 1.09002 * 109.49624 * 56.85078 * 10 8 7 34 34 H 1.08999 * 109.62987 * 294.11820 * 11 10 8 35 35 H 1.09001 * 109.78656 * 173.63436 * 11 10 8 36 36 H 0.96996 * 120.00209 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 1 3.9848 0.2873 -0.1940 7 6 4.0587 1.7839 1.3595 8 7 5.5102 2.0020 1.3005 9 6 6.0485 2.3251 2.6286 10 6 5.8530 3.0459 0.3254 11 6 5.4341 2.5886 -1.0759 12 7 4.0123 2.2141 -1.0396 13 16 2.9417 2.8341 -2.1406 14 8 3.7214 3.3666 -3.2025 15 8 1.9428 1.8417 -2.3316 16 6 2.1415 4.2046 -1.3751 17 1 2.3979 4.4838 -0.3638 18 6 1.1880 4.9206 -2.0673 19 7 0.8754 4.5804 -3.2986 20 14 0.3400 6.3741 -1.2561 21 1 1.3536 7.3934 -0.8831 22 1 -0.6362 6.9695 -2.2035 23 1 -0.3717 5.9144 -0.0365 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.5592 2.7226 1.5990 28 1 3.8329 1.0449 2.1283 29 1 5.5781 3.2357 2.9997 30 1 5.8410 1.5037 3.3144 31 1 7.1256 2.4756 2.5573 32 1 6.9284 3.2223 0.3442 33 1 5.3285 3.9672 0.5793 34 1 6.0321 1.7274 -1.3740 35 1 5.5809 3.4005 -1.7882 36 1 0.2049 5.0844 -3.7856 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192974013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:04 Heat of formation + Delta-G solvation = -171.545600 kcal Electronic energy + Delta-G solvation = -23814.308027 eV Core-core repulsion = 20232.065143 eV Total energy + Delta-G solvation = -3582.242885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.67624 -39.65885 -37.79454 -37.05918 -36.20591 -35.59568 -35.02669 -32.67765 -29.11482 -28.59283 -28.19632 -25.74489 -24.85689 -22.27724 -21.84261 -20.44475 -19.39827 -18.82987 -18.27713 -17.70208 -17.21432 -16.74415 -16.48149 -16.11602 -16.01685 -15.81256 -15.39620 -15.36210 -14.92216 -14.12735 -14.07147 -13.88933 -13.41472 -13.16272 -13.08537 -13.01881 -12.97352 -12.76735 -12.57961 -12.48062 -12.45448 -12.37715 -12.23822 -11.79713 -11.61008 -11.31180 -11.15056 -10.97468 -10.08046 -9.33594 -8.70376 -7.29636 0.17305 1.15845 1.27497 1.31554 1.42084 1.67066 2.19556 2.62824 2.69064 3.03408 3.62032 3.74278 3.77029 3.88241 4.12124 4.15602 4.28788 4.36263 4.44693 4.46509 4.54354 4.64840 4.70070 4.75518 4.78535 4.79206 4.97751 5.06283 5.11662 5.33014 5.49942 5.70647 5.92795 5.97117 6.07651 6.80497 6.85855 8.25780 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014926 B = 0.008711 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.436456 B = 3213.706783 C = 3771.270025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.437 3.563 4 O -0.490 6.490 5 C 0.174 3.826 6 H 0.127 0.873 7 C 0.061 3.939 8 N -0.536 5.536 9 C 0.026 3.974 10 C 0.042 3.958 11 C 0.120 3.880 12 N -1.005 6.005 13 S 2.712 3.288 14 O -1.037 7.037 15 O -1.031 7.031 16 C -0.985 4.985 17 H 0.104 0.896 18 C 0.072 3.928 19 N -0.903 5.903 20 Si 0.982 3.018 21 H -0.249 1.249 22 H -0.263 1.263 23 H -0.262 1.262 24 H 0.139 0.861 25 H 0.068 0.932 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.120 0.880 29 H 0.023 0.977 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -6.171 13.331 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.278 3.722 4 O -0.377 6.377 5 C 0.066 3.934 6 H 0.145 0.855 7 C -0.069 4.069 8 N -0.261 5.261 9 C -0.122 4.122 10 C -0.087 4.087 11 C -0.004 4.004 12 N -0.845 5.845 13 S 2.816 3.184 14 O -1.027 7.027 15 O -1.021 7.021 16 C -1.119 5.119 17 H 0.122 0.878 18 C -0.139 4.139 19 N -0.536 5.536 20 Si 0.802 3.198 21 H -0.172 1.172 22 H -0.187 1.187 23 H -0.186 1.186 24 H 0.157 0.843 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.138 0.862 29 H 0.041 0.959 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.452 -6.665 12.116 15.709 hybrid contribution -1.542 1.907 0.415 2.487 sum 5.910 -4.758 12.531 14.650 Atomic orbital electron populations 1.23425 0.75248 1.05310 1.01738 1.86323 1.24606 1.32129 1.83988 1.23846 0.92461 0.82500 0.73429 1.90962 1.67445 1.35993 1.43255 1.20504 0.85758 0.96455 0.90639 0.85526 1.22303 0.89430 1.01255 0.93933 1.61879 1.10391 1.44518 1.09305 1.22485 1.01164 1.00382 0.88133 1.22564 1.02861 0.92256 0.91008 1.21737 0.78603 1.01814 0.98257 1.57895 1.20817 1.59135 1.46700 1.00228 0.71500 0.74610 0.72080 1.93292 1.72366 1.81335 1.55710 1.93275 1.59892 1.63091 1.85862 1.30514 1.35708 1.33718 1.11985 0.87788 1.25829 0.94062 1.00085 0.93945 1.69979 1.30980 1.41092 1.11547 0.85290 0.78598 0.77058 0.78901 1.17226 1.18715 1.18623 0.84267 0.91379 0.94572 0.94804 0.86228 0.95874 0.89579 0.89122 0.85889 0.95185 0.88619 0.89635 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.17 10.56 113.37 1.20 2.37 16 2 O -0.35 -13.31 10.57 -51.39 -0.54 -13.85 16 3 C 0.44 18.54 4.51 71.23 0.32 18.86 16 4 O -0.49 -24.76 12.04 29.24 0.35 -24.41 16 5 C 0.17 6.21 3.48 44.21 0.15 6.37 16 6 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 7 C 0.06 1.69 4.90 86.38 0.42 2.11 16 8 N -0.54 -12.57 4.88 -921.45 -4.50 -17.07 16 9 C 0.03 0.42 9.58 127.69 1.22 1.64 16 10 C 0.04 1.09 5.62 86.38 0.49 1.58 16 11 C 0.12 3.96 6.57 86.35 0.57 4.53 16 12 N -1.01 -42.13 3.32 -493.79 -1.64 -43.77 16 13 S 2.71 153.23 4.35 -56.49 -0.25 152.98 16 14 O -1.04 -63.67 16.59 -128.00 -2.12 -65.80 16 15 O -1.03 -63.17 14.45 -119.01 -1.72 -64.89 16 16 C -0.98 -57.62 7.27 67.73 0.49 -57.13 16 17 H 0.10 5.77 7.72 -2.91 -0.02 5.75 16 18 C 0.07 4.23 5.46 84.65 0.46 4.70 16 19 N -0.90 -56.60 13.19 21.45 0.28 -56.32 16 20 Si 0.98 44.83 29.54 68.60 2.03 46.86 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.81 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 H 0.14 3.09 8.14 -2.39 -0.02 3.07 16 25 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 26 H 0.04 1.43 8.13 -2.38 -0.02 1.41 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.12 2.54 8.11 -2.39 -0.02 2.52 16 29 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 32 H 0.12 2.24 8.07 -2.39 -0.02 2.23 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.09 3.08 7.03 -2.39 -0.02 3.07 16 36 H 0.29 16.73 8.31 -92.71 -0.77 15.96 16 Total: -1.00 -83.81 308.78 -1.71 -85.52 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.08 Total: 15.73 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.33 Total: -14.98 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -5.86 Total: -117.15 kcal Atomic # 8 Polarization: -164.91 SS G_CDS: -4.03 Total: -168.95 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 153.23 SS G_CDS: -0.25 Total: 152.98 kcal Total: -83.81 -1.71 -85.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192974013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.030 kcal (2) G-P(sol) polarization free energy of solvation -83.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds