Wall clock time and date at job start Tue Mar 31 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46911 * 269.99815 * 3 2 1 5 5 H 1.48500 * 109.47281 * 29.99890 * 3 2 1 6 6 H 1.48498 * 109.47414 * 150.00274 * 3 2 1 7 7 C 1.37877 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99479 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00319 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47103 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99832 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47155 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47422 * 64.99887 * 12 11 10 14 14 C 1.34224 * 117.00549 * 180.02562 * 13 12 11 15 15 O 1.20827 * 119.99489 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00605 * 179.97438 * 14 13 12 17 17 H 1.08999 * 110.00763 * 301.38075 * 16 14 13 18 18 C 1.53878 * 110.02705 * 62.80337 * 16 14 13 19 19 C 1.54159 * 108.70185 * 166.47380 * 18 16 14 20 20 S 1.82920 * 105.08823 * 332.09231 * 19 18 16 21 21 O 1.42103 * 109.35097 * 115.52458 * 20 19 18 22 22 O 1.42096 * 109.35202 * 248.72257 * 20 19 18 23 23 C 1.55045 * 110.02946 * 179.97438 * 16 14 13 24 24 H 0.97007 * 120.00028 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47141 * 59.99636 * 9 7 2 26 26 H 1.09007 * 109.47052 * 300.00177 * 9 7 2 27 27 H 1.08999 * 109.47535 * 59.99649 * 11 10 9 28 28 H 1.09000 * 109.47202 * 299.99797 * 11 10 9 29 29 H 1.09001 * 109.46632 * 304.99710 * 12 11 10 30 30 H 1.08999 * 109.46844 * 185.00100 * 12 11 10 31 31 H 1.09005 * 109.64521 * 46.62339 * 18 16 14 32 32 H 1.08996 * 109.64754 * 286.32728 * 18 16 14 33 33 H 1.09010 * 110.31795 * 213.18865 * 19 18 16 34 34 H 1.08996 * 110.32170 * 90.99780 * 19 18 16 35 35 H 1.08999 * 110.79230 * 80.00109 * 23 16 14 36 36 H 1.08997 * 110.78846 * 316.54121 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6479 -5.9562 0.0036 13 8 3.3993 -5.8881 1.2442 14 6 4.3940 -6.7751 1.4037 15 8 4.6288 -7.5820 0.5356 16 6 5.2180 -6.7646 2.6654 17 1 5.6934 -5.7919 2.7923 18 6 4.3265 -7.0789 3.8796 19 6 5.2303 -7.3967 5.0874 20 16 6.7715 -8.0671 4.3654 21 8 7.8496 -7.1889 4.6582 22 8 6.8763 -9.4490 4.6793 23 6 6.2946 -7.8787 2.6059 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8920 27 1 0.9451 -4.9830 -0.8868 28 1 0.9446 -4.9819 0.8931 29 1 3.3214 -5.7959 -0.8384 30 1 2.1819 -6.9375 -0.0855 31 1 3.6952 -7.9394 3.6578 32 1 3.7002 -6.2164 4.1075 33 1 4.7576 -8.1410 5.7284 34 1 5.4407 -6.4885 5.6521 35 1 7.1474 -7.5610 2.0061 36 1 5.8713 -8.8053 2.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324941100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:30 Heat of formation + Delta-G solvation = -206.927096 kcal Electronic energy + Delta-G solvation = -21030.494657 eV Core-core repulsion = 17414.424764 eV Total energy + Delta-G solvation = -3616.069893 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.73478 -37.54271 -37.40391 -36.60814 -36.33904 -36.03043 -32.83447 -30.71008 -30.18844 -27.16633 -26.43100 -23.51094 -22.49196 -22.08258 -20.67438 -19.26974 -18.25574 -17.37490 -17.06899 -16.53278 -16.47857 -16.04981 -15.73405 -15.41974 -14.91415 -14.77454 -14.49792 -14.31769 -13.84493 -13.28846 -13.02740 -12.82159 -12.61912 -12.53171 -12.40904 -12.35468 -12.00188 -11.61593 -11.51671 -11.25630 -11.03749 -10.90850 -10.84453 -10.79141 -10.56568 -10.50180 -10.11111 -9.19855 -8.95330 -8.28811 -6.17728 -4.19809 -0.40372 1.95389 2.03584 2.55743 3.11167 3.26439 3.31768 3.36876 3.58824 3.73411 4.03214 4.11007 4.26405 4.36019 4.39405 4.60801 4.70781 4.97911 5.08193 5.09566 5.19089 5.23739 5.33494 5.36873 5.45016 5.74829 5.82501 5.96097 6.38756 6.97285 7.32096 7.59534 7.71912 8.05607 8.44170 8.92464 9.45350 10.93746 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.022251 B = 0.003003 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.044001 B = 9320.488819 C =10044.655090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.909 3.091 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.074 3.926 13 O -0.336 6.336 14 C 0.476 3.524 15 O -0.505 6.505 16 C -0.086 4.086 17 H 0.137 0.863 18 C -0.107 4.107 19 C -0.589 4.589 20 S 2.394 3.606 21 O -0.931 6.931 22 O -0.935 6.935 23 C -0.577 4.577 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 -16.876 8.383 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.000 4.000 13 O -0.251 6.251 14 C 0.317 3.683 15 O -0.394 6.394 16 C -0.106 4.106 17 H 0.154 0.846 18 C -0.146 4.146 19 C -0.719 4.719 20 S 2.577 3.423 21 O -0.928 6.928 22 O -0.932 6.932 23 C -0.706 4.706 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.721 -17.303 8.534 21.172 hybrid contribution -0.775 1.154 -0.628 1.525 sum 7.945 -16.148 7.907 19.657 Atomic orbital electron populations 1.69957 1.06127 1.27280 1.50386 1.24951 0.94993 0.99492 0.95028 0.86320 0.79675 0.82122 0.78285 1.20435 1.21032 1.19567 1.21039 0.94105 0.89268 1.51075 0.91492 1.20243 0.88715 0.83446 0.95528 1.87916 1.35371 1.12602 1.95237 1.22327 0.93167 0.85479 1.00693 1.23297 0.93704 0.98994 0.83992 1.86585 1.43045 1.53656 1.41825 1.22841 0.79199 0.78306 0.87972 1.90668 1.67564 1.38035 1.43100 1.21677 0.94580 1.01612 0.92715 0.84558 1.21874 0.97822 1.06032 0.88853 1.30511 1.19163 1.14045 1.08171 1.08972 0.78162 0.75819 0.79391 1.93651 1.49759 1.66964 1.82427 1.93629 1.86351 1.31120 1.82119 1.30745 1.08081 1.07255 1.24493 0.92576 0.97587 0.97482 0.91808 0.93115 0.90277 0.90227 0.89051 0.86875 0.83803 0.83772 0.83530 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.86 9.43 -34.44 -0.32 -15.19 16 8 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 9 C 0.19 5.15 5.69 36.00 0.20 5.35 16 10 O -0.39 -9.03 10.30 -38.80 -0.40 -9.43 16 11 C 0.06 1.03 6.33 37.16 0.24 1.27 16 12 C 0.07 1.05 5.84 37.16 0.22 1.27 16 13 O -0.34 -4.82 10.17 -42.01 -0.43 -5.25 16 14 C 0.48 5.82 7.24 36.01 0.26 6.08 16 15 O -0.51 -7.22 15.53 -18.75 -0.29 -7.51 16 16 C -0.09 -0.69 3.07 -90.23 -0.28 -0.97 16 17 H 0.14 0.91 8.14 -51.93 -0.42 0.48 16 18 C -0.11 -0.63 5.72 -25.67 -0.15 -0.78 16 19 C -0.59 -2.64 7.26 37.76 0.27 -2.37 16 20 S 2.39 16.77 6.11 -107.50 -0.66 16.12 16 21 O -0.93 -9.88 18.15 -57.71 -1.05 -10.93 16 22 O -0.94 -9.77 18.14 -57.71 -1.05 -10.82 16 23 C -0.58 -3.99 6.20 38.24 0.24 -3.75 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 30 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.14 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.14 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.15 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.15 1.01 7.64 -51.93 -0.40 0.61 16 LS Contribution 326.19 15.07 4.92 4.92 Total: -1.00 -38.02 326.19 -7.67 -45.68 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: -5.01 Total: -6.02 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.58 Total: -7.59 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -3.21 Total: -43.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 16.77 SS G_CDS: -0.66 Total: 16.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -38.02 -7.67 -45.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324941100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.246 kcal (2) G-P(sol) polarization free energy of solvation -38.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds