Wall clock time and date at job start Tue Mar 31 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00100 * 2 1 4 4 H 1.48502 * 109.46911 * 269.99815 * 3 2 1 5 5 H 1.48500 * 109.47281 * 29.99890 * 3 2 1 6 6 H 1.48498 * 109.47414 * 150.00274 * 3 2 1 7 7 C 1.37877 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99479 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00319 * 359.97438 * 7 2 1 10 10 O 1.42897 * 109.47103 * 180.02562 * 9 7 2 11 11 C 1.42904 * 113.99832 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47155 * 179.97438 * 11 10 9 13 13 O 1.45196 * 109.47422 * 64.99887 * 12 11 10 14 14 C 1.34224 * 117.00549 * 180.02562 * 13 12 11 15 15 O 1.20827 * 119.99489 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00605 * 179.97438 * 14 13 12 17 17 H 1.08999 * 110.00763 * 301.38075 * 16 14 13 18 18 C 1.53878 * 110.02705 * 62.80337 * 16 14 13 19 19 C 1.54159 * 108.70185 * 166.47380 * 18 16 14 20 20 S 1.82920 * 105.08823 * 332.09231 * 19 18 16 21 21 O 1.42103 * 109.35097 * 115.52458 * 20 19 18 22 22 O 1.42096 * 109.35202 * 248.72257 * 20 19 18 23 23 C 1.55045 * 110.02946 * 179.97438 * 16 14 13 24 24 H 0.97007 * 120.00028 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47141 * 59.99636 * 9 7 2 26 26 H 1.09007 * 109.47052 * 300.00177 * 9 7 2 27 27 H 1.08999 * 109.47535 * 59.99649 * 11 10 9 28 28 H 1.09000 * 109.47202 * 299.99797 * 11 10 9 29 29 H 1.09001 * 109.46632 * 304.99710 * 12 11 10 30 30 H 1.08999 * 109.46844 * 185.00100 * 12 11 10 31 31 H 1.09005 * 109.64521 * 46.62339 * 18 16 14 32 32 H 1.08996 * 109.64754 * 286.32728 * 18 16 14 33 33 H 1.09010 * 110.31795 * 213.18865 * 19 18 16 34 34 H 1.08996 * 110.32170 * 90.99780 * 19 18 16 35 35 H 1.08999 * 110.79230 * 80.00109 * 23 16 14 36 36 H 1.08997 * 110.78846 * 316.54121 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0027 11 6 1.5650 -4.8754 0.0032 12 6 2.6479 -5.9562 0.0036 13 8 3.3993 -5.8881 1.2442 14 6 4.3940 -6.7751 1.4037 15 8 4.6288 -7.5820 0.5356 16 6 5.2180 -6.7646 2.6654 17 1 5.6934 -5.7919 2.7923 18 6 4.3265 -7.0789 3.8796 19 6 5.2303 -7.3967 5.0874 20 16 6.7715 -8.0671 4.3654 21 8 7.8496 -7.1889 4.6582 22 8 6.8763 -9.4490 4.6793 23 6 6.2946 -7.8787 2.6059 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8920 27 1 0.9451 -4.9830 -0.8868 28 1 0.9446 -4.9819 0.8931 29 1 3.3214 -5.7959 -0.8384 30 1 2.1819 -6.9375 -0.0855 31 1 3.6952 -7.9394 3.6578 32 1 3.7002 -6.2164 4.1075 33 1 4.7576 -8.1410 5.7284 34 1 5.4407 -6.4885 5.6521 35 1 7.1474 -7.5610 2.0061 36 1 5.8713 -8.8053 2.2183 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324941100.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:29 Heat of formation + Delta-G solvation = -235.726675 kcal Electronic energy + Delta-G solvation = -21031.743501 eV Core-core repulsion = 17414.424764 eV Total energy + Delta-G solvation = -3617.318736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.72682 -38.86488 -38.13604 -37.74841 -37.16886 -36.86265 -34.94224 -31.78744 -31.05359 -29.07982 -27.23517 -24.61072 -24.21800 -23.23681 -21.53892 -19.87897 -19.10207 -18.69527 -18.11257 -17.95966 -17.62251 -16.98928 -16.74759 -16.57254 -16.30275 -16.20577 -15.41173 -15.20813 -15.07783 -14.42775 -14.19805 -13.85736 -13.52453 -13.30285 -13.27503 -13.19456 -13.11075 -12.95303 -12.90839 -12.69607 -12.44592 -12.12717 -11.99416 -11.90406 -11.74754 -11.52502 -11.32739 -11.27582 -10.89144 -10.26776 -8.32290 -6.44241 -0.97091 1.03188 1.37094 1.41763 1.43614 1.55825 1.74200 2.34790 2.54506 3.02110 3.02329 3.05808 3.12682 3.46469 3.54178 3.76479 3.92206 3.95308 3.99111 4.11211 4.41815 4.45265 4.52133 4.66463 4.68318 4.82140 4.86267 4.91047 5.00544 5.18185 5.36705 5.54749 5.95472 6.49725 6.60812 6.80007 7.27603 8.79758 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.022251 B = 0.003003 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.044001 B = 9320.488819 C =10044.655090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.209 3.791 10 O -0.409 6.409 11 C 0.052 3.948 12 C 0.077 3.923 13 O -0.351 6.351 14 C 0.475 3.525 15 O -0.529 6.529 16 C -0.089 4.089 17 H 0.151 0.849 18 C -0.109 4.109 19 C -0.562 4.562 20 S 2.410 3.590 21 O -0.970 6.970 22 O -0.972 6.972 23 C -0.575 4.575 24 H 0.271 0.729 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 -16.563 9.241 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.804 3.196 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.134 3.866 10 O -0.329 6.329 11 C -0.024 4.024 12 C 0.004 3.996 13 O -0.267 6.267 14 C 0.318 3.682 15 O -0.419 6.419 16 C -0.109 4.109 17 H 0.169 0.831 18 C -0.148 4.148 19 C -0.695 4.695 20 S 2.596 3.404 21 O -0.967 6.967 22 O -0.970 6.970 23 C -0.703 4.703 24 H 0.080 0.920 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.186 0.814 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.816 -17.028 9.389 21.350 hybrid contribution -0.866 0.975 -0.915 1.593 sum 7.950 -16.053 8.474 19.817 Atomic orbital electron populations 1.70053 1.07668 1.28679 1.50432 1.25915 0.95943 1.03265 0.93919 0.85214 0.78443 0.77183 0.78774 1.19465 1.19909 1.18865 1.21393 0.94119 0.90941 1.52331 0.92112 1.19857 0.88523 0.84335 0.93906 1.87857 1.35518 1.14221 1.95340 1.22660 0.94543 0.83302 1.01939 1.23227 0.93127 0.99281 0.84007 1.86580 1.43850 1.54632 1.41626 1.23563 0.78533 0.77224 0.88882 1.90656 1.68077 1.38865 1.44285 1.21879 0.94571 1.02815 0.91636 0.83120 1.21962 0.97745 1.06905 0.88161 1.30362 1.15984 1.15286 1.07828 1.08351 0.78587 0.74454 0.78973 1.93597 1.52664 1.67473 1.83003 1.93577 1.87389 1.33329 1.82657 1.30722 1.07988 1.07071 1.24562 0.92007 0.99158 0.99078 0.90256 0.92166 0.91132 0.87046 0.87886 0.86244 0.81361 0.81869 0.83079 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 2 C 0.01 0.47 5.46 84.66 0.46 0.93 16 3 Si 0.98 43.29 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.55 -31.96 9.43 25.60 0.24 -31.72 16 8 H 0.06 3.51 7.81 -2.91 -0.02 3.48 16 9 C 0.21 11.25 5.69 71.23 0.41 11.65 16 10 O -0.41 -19.04 10.30 -145.57 -1.50 -20.54 16 11 C 0.05 1.74 6.33 71.98 0.46 2.19 16 12 C 0.08 2.11 5.84 71.98 0.42 2.53 16 13 O -0.35 -9.67 10.17 -48.72 -0.50 -10.17 16 14 C 0.48 11.05 7.24 71.24 0.52 11.56 16 15 O -0.53 -14.64 15.53 21.96 0.34 -14.30 16 16 C -0.09 -1.28 3.07 -10.54 -0.03 -1.32 16 17 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 18 C -0.11 -0.99 5.72 31.28 0.18 -0.81 16 19 C -0.56 -3.33 7.26 72.37 0.53 -2.80 16 20 S 2.41 31.18 6.11 -56.49 -0.34 30.84 16 21 O -0.97 -20.11 18.15 -127.49 -2.31 -22.42 16 22 O -0.97 -19.79 18.14 -127.49 -2.31 -22.10 16 23 C -0.57 -7.35 6.20 72.68 0.45 -6.90 16 24 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 27 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 30 H 0.11 2.35 8.13 -2.39 -0.02 2.33 16 31 H 0.10 0.73 8.09 -2.38 -0.02 0.71 16 32 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.17 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.15 1.92 7.64 -2.39 -0.02 1.90 16 Total: -1.00 -81.85 326.19 0.39 -81.46 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: 1.08 Total: 0.66 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 3.62 Total: -14.68 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.28 Total: -54.07 kcal Atomic # 8 Polarization: -83.24 SS G_CDS: -6.28 Total: -89.52 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.34 Total: 30.84 kcal Total: -81.85 0.39 -81.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324941100.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.262 kcal (2) G-P(sol) polarization free energy of solvation -81.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds