Wall clock time and date at job start Tue Mar 31 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 S 1.65593 * 119.99789 * 2 1 4 4 O 1.42100 * 104.28109 * 308.93499 * 3 2 1 5 5 O 1.42104 * 104.27718 * 181.07661 * 3 2 1 6 6 C 1.81396 * 104.45120 * 65.00685 * 3 2 1 7 7 C 1.50695 * 109.47532 * 179.97438 * 6 3 2 8 8 O 1.21280 * 119.99679 * 0.02562 * 7 6 3 9 9 N 1.34775 * 120.00178 * 179.97438 * 7 6 3 10 10 C 1.47022 * 125.65138 * 359.97438 * 9 7 6 11 11 C 1.54322 * 107.27482 * 178.98361 * 10 9 7 12 12 C 1.55157 * 102.93912 * 337.80443 * 11 10 9 13 13 O 1.42900 * 111.00520 * 277.38901 * 12 11 10 14 14 C 1.50702 * 111.00344 * 153.57728 * 12 11 10 15 15 H 1.08002 * 120.00299 * 241.45696 * 14 12 11 16 16 C 1.37884 * 119.99942 * 61.17254 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.47424 * 125.64952 * 180.02562 * 9 7 6 23 23 H 1.09005 * 109.46440 * 299.99251 * 1 2 3 24 24 H 1.08998 * 109.47200 * 59.99120 * 1 2 3 25 25 H 1.09002 * 109.47118 * 179.97438 * 1 2 3 26 26 H 0.97003 * 119.99715 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.47250 * 59.99152 * 6 3 2 28 28 H 1.09003 * 109.47229 * 299.99612 * 6 3 2 29 29 H 1.09003 * 109.88076 * 59.56192 * 10 9 7 30 30 H 1.09001 * 110.00358 * 298.47568 * 10 9 7 31 31 H 1.08995 * 110.71729 * 219.44160 * 11 10 9 32 32 H 1.08996 * 110.71909 * 96.16437 * 11 10 9 33 33 H 0.96704 * 113.99783 * 295.41666 * 13 12 11 34 34 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 35 35 H 1.09007 * 110.36818 * 85.24741 * 22 9 7 36 36 H 1.09006 * 110.37032 * 322.92419 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7188 2.1704 -1.0712 5 8 3.6607 1.0492 -0.0259 6 6 1.8766 2.1972 1.5921 7 6 2.5793 3.5249 1.7120 8 8 3.2907 3.9179 0.8117 9 7 2.4165 4.2760 2.8191 10 6 1.5859 3.9229 3.9797 11 6 1.7255 5.0653 5.0077 12 6 3.0700 5.7292 4.6089 13 8 4.1773 5.0197 5.1681 14 6 3.0989 7.1792 5.0185 15 1 3.2008 7.9501 4.2690 16 6 2.9893 7.5219 6.3495 17 7 2.8652 6.5832 7.2622 18 14 3.0173 9.3196 6.8564 19 1 1.8887 10.0345 6.2078 20 1 2.8847 9.4199 8.3321 21 1 4.3013 9.9336 6.4324 22 6 3.0409 5.5883 3.0665 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.9501 -0.8401 -0.0004 27 1 2.1959 1.5429 2.4033 28 1 0.7989 2.3496 1.6512 29 1 1.9364 2.9872 4.4154 30 1 0.5439 3.8228 3.6758 31 1 1.7773 4.6678 6.0212 32 1 0.9024 5.7733 4.9115 33 1 4.2088 5.0385 6.1345 34 1 2.7884 6.8243 8.1986 35 1 2.4407 6.3835 2.6242 36 1 4.0540 5.6083 2.6647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328569624.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:06 Heat of formation + Delta-G solvation = -149.602551 kcal Electronic energy + Delta-G solvation = -22157.212644 eV Core-core repulsion = 18575.921281 eV Total energy + Delta-G solvation = -3581.291363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.73534 -37.50235 -37.11398 -35.94883 -35.24534 -34.47674 -32.30775 -31.05918 -29.47530 -28.22391 -26.27148 -25.11625 -22.58063 -20.24033 -19.69165 -18.93723 -18.06031 -17.28848 -16.96044 -16.56411 -16.29352 -15.72762 -15.07066 -15.01766 -14.61226 -14.30726 -14.13041 -13.91279 -13.23154 -13.09464 -12.83757 -12.39203 -12.14062 -12.06676 -11.99024 -11.84932 -11.77870 -11.47758 -11.43050 -11.16473 -10.94688 -10.73730 -10.57446 -10.14781 -10.00296 -9.84879 -9.48216 -8.76947 -8.33907 -8.24806 -6.36910 -4.45576 0.08590 2.63422 2.65208 3.17129 3.17375 3.22341 3.27222 3.79298 4.11428 4.20250 4.36552 4.69611 4.77665 4.90442 4.99372 5.13104 5.38030 5.40606 5.45212 5.56327 5.67538 5.86095 6.08775 6.29842 6.48178 6.65002 6.72674 6.78764 7.18636 7.23025 7.64714 7.80243 7.90313 8.19131 8.57391 9.21441 9.30457 10.70357 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039983 B = 0.003707 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.137737 B = 7552.316734 C = 7730.556575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.128 6.128 3 S 2.650 3.350 4 O -0.941 6.941 5 O -0.943 6.943 6 C -0.666 4.666 7 C 0.550 3.450 8 O -0.550 6.550 9 N -0.592 5.592 10 C 0.094 3.906 11 C -0.136 4.136 12 C 0.248 3.752 13 O -0.583 6.583 14 C -0.538 4.538 15 H 0.066 0.934 16 C 0.074 3.926 17 N -0.896 5.896 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.116 3.884 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.418 0.582 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.382 0.618 34 H 0.269 0.731 35 H 0.078 0.922 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 -12.938 -5.974 16.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.888 5.888 3 S 2.736 3.264 4 O -0.930 6.930 5 O -0.932 6.932 6 C -0.794 4.794 7 C 0.335 3.665 8 O -0.431 6.431 9 N -0.322 5.322 10 C -0.028 4.028 11 C -0.175 4.175 12 C 0.207 3.793 13 O -0.391 6.391 14 C -0.576 4.576 15 H 0.084 0.916 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.005 4.005 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.252 0.748 27 H 0.176 0.824 28 H 0.172 0.828 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.597 -12.409 -7.589 16.410 hybrid contribution -0.574 0.531 1.909 2.063 sum -8.171 -11.878 -5.680 15.496 Atomic orbital electron populations 1.21528 0.78879 1.04263 1.02049 1.55630 1.16033 1.24981 1.92134 1.04075 0.73543 0.73047 0.75714 1.93578 1.78969 1.72091 1.48380 1.93595 1.32174 1.81081 1.86396 1.31029 1.12267 1.07916 1.28206 1.18604 0.81608 0.83804 0.82461 1.90818 1.40467 1.72830 1.38978 1.48473 1.46588 1.20914 1.16272 1.22303 0.93141 1.00456 0.86943 1.23199 1.01315 0.95216 0.97769 1.19613 0.82827 0.90478 0.86353 1.86143 1.49679 1.76810 1.26490 1.21399 1.51770 0.91427 0.93050 0.91598 1.24989 0.93287 0.98375 0.96271 1.69702 1.49351 1.32775 1.01621 0.86445 0.78972 0.84076 0.77326 1.19998 1.21098 1.19919 1.22546 0.98140 0.81847 0.97974 0.92258 0.91184 0.89917 0.74814 0.82407 0.82773 0.92042 0.92481 0.89222 0.91105 0.76789 0.92081 0.90350 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 11.03 59.85 0.66 1.11 16 2 N -1.13 -9.11 6.08 -16.63 -0.10 -9.21 16 3 S 2.65 35.30 4.60 -107.50 -0.49 34.80 16 4 O -0.94 -15.69 17.73 -57.55 -1.02 -16.71 16 5 O -0.94 -16.04 18.08 -57.55 -1.04 -17.08 16 6 C -0.67 -8.12 5.70 36.00 0.21 -7.92 16 7 C 0.55 10.20 7.87 -10.99 -0.09 10.12 16 8 O -0.55 -12.21 16.12 5.56 0.09 -12.12 16 9 N -0.59 -11.35 3.33 -170.52 -0.57 -11.92 16 10 C 0.09 1.57 6.49 -3.06 -0.02 1.55 16 11 C -0.14 -2.76 5.38 -24.90 -0.13 -2.89 16 12 C 0.25 5.77 0.88 -89.62 -0.08 5.69 16 13 O -0.58 -14.35 13.18 -35.23 -0.46 -14.81 16 14 C -0.54 -13.57 8.27 -34.44 -0.28 -13.86 16 15 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 16 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 17 N -0.90 -22.16 10.73 55.43 0.59 -21.57 16 18 Si 0.90 19.64 29.54 -169.99 -5.02 14.61 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.12 2.54 6.08 -2.53 -0.02 2.52 16 23 H 0.06 0.24 7.73 -51.93 -0.40 -0.17 16 24 H 0.07 0.45 8.04 -51.93 -0.42 0.03 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.42 2.58 8.92 -34.47 -0.31 2.28 16 27 H 0.16 1.48 8.14 -51.92 -0.42 1.05 16 28 H 0.15 1.31 7.77 -51.92 -0.40 0.90 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 32 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 33 H 0.38 9.35 7.51 45.56 0.34 9.69 16 34 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 35 H 0.08 1.64 8.03 -51.92 -0.42 1.22 16 36 H 0.08 1.79 8.04 -51.93 -0.42 1.37 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -33.95 317.95 -7.14 -41.09 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.06 Total: 10.06 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 0.15 Total: -1.94 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.07 Total: -42.70 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -2.44 Total: -60.73 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 35.30 SS G_CDS: -0.49 Total: 34.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.95 -7.14 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328569624.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.512 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds