Wall clock time and date at job start Tue Mar 31 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48504 * 109.47458 * 269.99765 * 3 2 1 5 5 H 1.48499 * 109.47351 * 30.00314 * 3 2 1 6 6 H 1.48504 * 109.46552 * 150.00165 * 3 2 1 7 7 C 1.38946 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00039 * 359.97438 * 7 2 1 9 9 N 1.37098 * 119.99865 * 179.97438 * 7 2 1 10 10 C 1.34783 * 119.99723 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00040 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99739 * 180.02562 * 10 9 7 13 13 N 1.46502 * 109.47286 * 180.02562 * 12 10 9 14 14 S 1.65595 * 120.00123 * 164.99496 * 13 12 10 15 15 O 1.42093 * 104.27935 * 308.92604 * 14 13 12 16 16 O 1.42105 * 104.27413 * 181.06655 * 14 13 12 17 17 C 1.81401 * 104.44822 * 65.00073 * 14 13 12 18 18 C 1.52997 * 109.47149 * 179.97438 * 17 14 13 19 19 H 1.09004 * 110.33324 * 305.69921 * 18 17 14 20 20 C 1.54476 * 110.37423 * 183.45081 * 18 17 14 21 21 C 1.54509 * 104.06327 * 217.18884 * 20 18 17 22 22 C 1.54486 * 104.06437 * 0.02562 * 21 20 18 23 23 O 1.44426 * 110.37206 * 67.94971 * 18 17 14 24 24 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 25 25 H 0.97000 * 120.00183 * 0.02562 * 9 7 2 26 26 H 1.09001 * 109.47467 * 59.99313 * 12 10 9 27 27 H 1.09008 * 109.47086 * 299.99564 * 12 10 9 28 28 H 0.96997 * 119.99542 * 344.99481 * 13 12 10 29 29 H 1.09002 * 109.47085 * 299.99812 * 17 14 13 30 30 H 1.09001 * 109.47417 * 59.99938 * 17 14 13 31 31 H 1.08997 * 110.51048 * 335.82995 * 20 18 17 32 32 H 1.08998 * 110.51650 * 98.41019 * 20 18 17 33 33 H 1.09003 * 110.51397 * 118.64015 * 21 20 18 34 34 H 1.08996 * 110.51579 * 241.21972 * 21 20 18 35 35 H 1.08994 * 110.37115 * 142.80925 * 22 21 20 36 36 H 1.09003 * 110.36832 * 265.03673 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4209 -0.0001 12 6 5.5607 -2.3706 -0.0011 13 7 6.0490 -3.7518 -0.0017 14 16 7.6310 -4.0706 -0.3731 15 8 7.8485 -3.3842 -1.5981 16 8 7.7300 -5.4862 -0.2988 17 6 8.5757 -3.2953 0.9674 18 6 10.0708 -3.5234 0.7359 19 1 10.2774 -4.5868 0.6152 20 6 10.8912 -2.9461 1.9106 21 6 12.1546 -2.3656 1.2368 22 6 11.9478 -2.6602 -0.2656 23 8 10.5175 -2.7895 -0.4251 24 1 -0.4850 0.8401 -0.0004 25 1 3.8648 -0.3633 -0.0007 26 1 5.9241 -1.8567 0.8888 27 1 5.9240 -1.8568 -0.8912 28 1 5.4457 -4.4796 0.2155 29 1 8.3696 -2.2251 0.9854 30 1 8.2844 -3.7374 1.9202 31 1 10.3322 -2.1589 2.4163 32 1 11.1590 -3.7350 2.6135 33 1 12.2202 -1.2914 1.4093 34 1 13.0492 -2.8663 1.6070 35 1 12.3249 -1.8349 -0.8695 36 1 12.4452 -3.5900 -0.5419 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345399550.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:06 Heat of formation + Delta-G solvation = -149.427696 kcal Electronic energy + Delta-G solvation = -21487.293157 eV Core-core repulsion = 17906.009377 eV Total energy + Delta-G solvation = -3581.283780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.83378 -38.63180 -37.01776 -35.85810 -34.73613 -33.79149 -32.81924 -32.12716 -31.78192 -27.36649 -26.75641 -24.15721 -22.67619 -21.55864 -19.69027 -19.30654 -18.69380 -17.73822 -17.13530 -16.49451 -16.34294 -15.87951 -15.72389 -15.37515 -15.00474 -14.66686 -14.43116 -14.14447 -13.27117 -13.13394 -13.00300 -12.65901 -12.51589 -12.39438 -12.37597 -12.13876 -11.99861 -11.90527 -11.71381 -11.66078 -11.25423 -11.11020 -10.70338 -10.65602 -10.23845 -10.05677 -9.69599 -9.41777 -8.73729 -8.29669 -6.39661 -3.92305 0.23224 2.76191 2.96920 3.03116 3.11477 3.29193 3.55791 3.72026 4.02609 4.03345 4.18451 4.28342 4.43104 4.47109 4.56839 4.67611 4.86721 4.93687 5.12311 5.15059 5.25121 5.30427 5.31265 5.40167 5.54740 5.57291 5.59862 5.68663 5.99974 6.32155 7.20791 7.46228 8.02712 8.46744 8.83512 9.30689 9.65499 10.72769 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.003729 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.235172 B = 7506.538424 C = 8254.149120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.580 5.580 10 C 0.444 3.556 11 O -0.570 6.570 12 C 0.100 3.900 13 N -1.101 6.101 14 S 2.620 3.380 15 O -0.940 6.940 16 O -0.959 6.959 17 C -0.635 4.635 18 C 0.081 3.919 19 H 0.086 0.914 20 C -0.143 4.143 21 C -0.157 4.157 22 C 0.042 3.958 23 O -0.364 6.364 24 H 0.275 0.725 25 H 0.373 0.627 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.427 0.573 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.845 -1.441 5.147 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.219 5.219 10 C 0.229 3.771 11 O -0.453 6.453 12 C -0.031 4.031 13 N -0.865 5.865 14 S 2.710 3.290 15 O -0.929 6.929 16 O -0.950 6.950 17 C -0.762 4.762 18 C 0.022 3.978 19 H 0.103 0.897 20 C -0.181 4.181 21 C -0.195 4.195 22 C -0.035 4.035 23 O -0.283 6.283 24 H 0.086 0.914 25 H 0.207 0.793 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.266 0.734 29 H 0.161 0.839 30 H 0.165 0.835 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.482 -2.265 4.179 24.939 hybrid contribution 0.405 1.521 1.008 1.869 sum 24.887 -0.744 5.187 25.433 Atomic orbital electron populations 1.69620 1.05716 1.27754 1.48374 1.25066 0.95528 0.98135 0.97254 0.86666 0.79761 0.83816 0.79145 1.19350 1.20055 1.19356 1.19453 0.79000 0.96815 1.48562 0.86085 1.42151 1.07713 1.06063 1.65933 1.19507 0.87846 0.84848 0.84908 1.90553 1.68861 1.30977 1.54908 1.20998 0.96312 0.82947 1.02797 1.55267 1.28228 1.14528 1.88479 1.04749 0.73505 0.74514 0.76243 1.93613 1.84452 1.75909 1.38949 1.93598 1.85675 1.28241 1.87438 1.30759 1.07180 1.16268 1.22039 1.22587 0.90979 0.97019 0.87211 0.89657 1.22949 0.96027 1.01519 0.97636 1.22970 0.98370 1.02452 0.95664 1.23486 0.81897 1.01996 0.96082 1.89308 1.21547 1.75910 1.41518 0.91415 0.79347 0.90251 0.88460 0.73405 0.83901 0.83461 0.89883 0.89873 0.90307 0.90208 0.88450 0.91783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.00 13.96 55.50 0.77 -24.22 16 2 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 3 Si 0.88 18.69 27.74 -169.99 -4.71 13.97 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.08 6.52 56.52 0.37 -4.71 16 7 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 9 N -0.58 -13.27 5.09 -10.96 -0.06 -13.33 16 10 C 0.44 9.68 7.85 -10.98 -0.09 9.59 16 11 O -0.57 -14.69 15.30 5.55 0.08 -14.61 16 12 C 0.10 1.56 6.61 -5.19 -0.03 1.52 16 13 N -1.10 -16.55 5.82 -11.65 -0.07 -16.61 16 14 S 2.62 35.73 5.36 -107.50 -0.58 35.15 16 15 O -0.94 -16.05 17.21 -57.98 -1.00 -17.05 16 16 O -0.96 -15.43 18.08 -57.54 -1.04 -16.47 16 17 C -0.64 -5.74 5.69 37.16 0.21 -5.53 16 18 C 0.08 0.75 3.25 -25.96 -0.08 0.67 16 19 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 20 C -0.14 -0.94 6.63 -25.16 -0.17 -1.10 16 21 C -0.16 -0.92 7.09 -25.16 -0.18 -1.09 16 22 C 0.04 0.32 7.63 37.94 0.29 0.61 16 23 O -0.36 -4.14 10.95 -35.23 -0.39 -4.53 16 24 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.37 7.34 5.76 -40.82 -0.24 7.11 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.10 1.39 7.69 -51.92 -0.40 0.99 16 28 H 0.43 6.89 7.66 -34.47 -0.26 6.63 16 29 H 0.14 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.15 0.92 8.14 -51.92 -0.42 0.50 16 31 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 32 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -36.90 318.63 -7.14 -44.04 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -4.67 Total: 11.78 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.30 Total: -2.92 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.65 Total: -54.16 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -2.34 Total: -52.65 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.71 Total: 13.97 kcal Atomic # 16 Polarization: 35.73 SS G_CDS: -0.58 Total: 35.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -36.90 -7.14 -44.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345399550.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.386 kcal (2) G-P(sol) polarization free energy of solvation -36.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds