Wall clock time and date at job start Tue Mar 31 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21492 * 119.99511 * 179.86539 * 13 12 11 15 15 C 1.48344 * 119.99971 * 359.87065 * 13 12 11 16 16 C 1.39299 * 119.56687 * 179.97438 * 15 13 12 17 17 C 1.38445 * 119.19636 * 179.97438 * 16 15 13 18 18 C 1.39913 * 118.35125 * 0.02562 * 17 16 15 19 19 C 1.47900 * 120.46598 * 179.97438 * 18 17 16 20 20 O 1.21448 * 119.99859 * 0.02562 * 19 18 17 21 21 O 1.34686 * 120.00002 * 180.02562 * 19 18 17 22 22 C 1.39771 * 119.06768 * 0.02562 * 18 17 16 23 23 N 1.31409 * 120.70692 * 359.72140 * 22 18 17 24 24 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 27 27 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 28 28 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 29 29 H 1.07999 * 120.39981 * 0.02562 * 16 15 13 30 30 H 1.07998 * 120.82127 * 180.02562 * 17 16 15 31 31 H 0.96706 * 117.00082 * 180.02562 * 21 19 18 32 32 H 1.08003 * 119.64392 * 180.02562 * 22 18 17 33 33 H 1.08999 * 113.76805 * 221.15228 * 24 12 11 34 34 H 1.09000 * 113.87378 * 89.76768 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9083 -3.3097 -0.8997 15 6 7.0335 -1.5436 -2.4308 16 6 8.3276 -1.8811 -2.8204 17 6 8.9635 -1.1176 -3.7845 18 6 8.2745 -0.0296 -4.3314 19 6 8.9094 0.8179 -5.3639 20 8 10.0365 0.5711 -5.7431 21 8 8.2378 1.8633 -5.8836 22 6 6.9781 0.2459 -3.8874 23 7 6.4077 -0.5066 -2.9734 24 6 4.1313 -2.6024 -0.0480 25 1 -0.4850 0.8401 0.0004 26 1 3.7023 0.5402 1.0280 27 1 3.4726 -1.2571 -2.2148 28 1 4.5870 0.0025 -1.5238 29 1 8.8285 -2.7287 -2.3764 30 1 9.9664 -1.3559 -4.1064 31 1 8.6939 2.3878 -6.5559 32 1 6.4376 1.0832 -4.3035 33 1 4.5862 -2.9145 0.8921 34 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:14 Heat of formation + Delta-G solvation = -76.905114 kcal Electronic energy + Delta-G solvation = -22800.641247 eV Core-core repulsion = 19087.058331 eV Total energy + Delta-G solvation = -3713.582917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.12902 -40.14812 -39.24215 -37.59354 -36.52078 -34.52365 -33.04003 -32.54167 -31.95569 -29.10545 -26.50851 -25.46541 -24.96534 -23.87916 -22.24741 -20.53290 -19.25830 -18.65521 -17.82701 -17.53992 -17.01902 -16.78601 -16.17820 -16.08667 -15.42462 -15.18933 -14.95440 -14.23288 -13.96847 -13.66187 -13.55311 -13.46667 -13.07037 -13.02984 -12.56763 -12.33202 -12.15727 -11.99265 -11.24343 -11.20632 -10.94620 -10.61511 -10.34645 -10.24822 -10.12514 -9.71961 -9.57041 -9.36876 -9.02354 -8.64615 -8.10769 -6.41820 -4.48121 -0.08934 0.89634 1.97735 2.52191 2.89434 3.00449 3.05203 3.11774 3.17229 3.73483 3.94260 4.04601 4.39542 4.42212 4.51464 4.68652 4.80725 4.90431 5.10561 5.41895 5.52869 5.63170 5.67074 5.94133 6.02049 6.10894 6.14142 6.30080 6.38474 6.50278 6.63344 7.19955 7.39138 7.49375 8.02575 8.10977 8.38759 8.51823 8.61453 9.15719 10.70255 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.004676 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.907823 B = 5986.036798 C = 7120.518468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.082 3.918 3 Si 0.854 3.146 4 H -0.268 1.268 5 H -0.251 1.251 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.091 0.909 9 C 0.190 3.810 10 O -0.554 6.554 11 C 0.080 3.920 12 N -0.607 5.607 13 C 0.575 3.425 14 O -0.548 6.548 15 C 0.134 3.866 16 C -0.129 4.129 17 C -0.015 4.015 18 C -0.174 4.174 19 C 0.537 3.463 20 O -0.511 6.511 21 O -0.507 6.507 22 C 0.159 3.841 23 N -0.455 5.455 24 C 0.127 3.873 25 H 0.271 0.729 26 H 0.353 0.647 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.155 0.845 31 H 0.418 0.582 32 H 0.177 0.823 33 H 0.079 0.921 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 3.399 -10.325 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.124 4.124 3 Si 0.682 3.318 4 H -0.194 1.194 5 H -0.176 1.176 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.109 0.891 9 C 0.149 3.851 10 O -0.365 6.365 11 C -0.042 4.042 12 N -0.338 5.338 13 C 0.361 3.639 14 O -0.428 6.428 15 C -0.004 4.004 16 C -0.150 4.150 17 C -0.041 4.041 18 C -0.178 4.178 19 C 0.380 3.620 20 O -0.400 6.400 21 O -0.319 6.319 22 C -0.001 4.001 23 N -0.166 5.166 24 C 0.006 3.994 25 H 0.081 0.919 26 H 0.205 0.795 27 H 0.113 0.887 28 H 0.102 0.898 29 H 0.177 0.823 30 H 0.173 0.827 31 H 0.277 0.723 32 H 0.194 0.806 33 H 0.097 0.903 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.687 2.289 -9.488 16.811 hybrid contribution 1.183 1.706 -1.014 2.310 sum 14.870 3.995 -10.502 18.638 Atomic orbital electron populations 1.69857 1.06104 1.27631 1.47626 1.24985 0.94883 0.98990 0.93516 0.87392 0.80843 0.84341 0.79183 1.19432 1.17599 1.20934 1.21206 0.87563 0.95719 1.52908 0.89081 1.20634 0.92697 0.87781 0.84033 1.86451 1.67585 1.25666 1.56798 1.24707 0.87409 0.90929 1.01198 1.50072 1.11522 1.32090 1.40150 1.17468 0.81386 0.83479 0.81537 1.90750 1.66075 1.29245 1.56685 1.21722 0.91996 0.92155 0.94548 1.22130 0.94694 1.01160 0.97002 1.21723 1.00002 0.90561 0.91803 1.20243 0.97721 0.99060 1.00749 1.20597 0.83142 0.78494 0.79778 1.90898 1.19277 1.70219 1.59653 1.84549 1.50223 1.41026 1.56146 1.23323 0.90346 0.96435 0.90039 1.67968 1.36213 1.04152 1.08270 1.23412 0.87103 0.97430 0.91500 0.91904 0.79532 0.88745 0.89846 0.82268 0.82688 0.72286 0.80568 0.90283 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.25 13.96 55.43 0.77 -23.48 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.85 18.57 24.31 -169.99 -4.13 14.44 16 4 H -0.27 -5.71 7.05 56.52 0.40 -5.31 16 5 H -0.25 -5.12 5.16 56.52 0.29 -4.83 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.62 9.19 -34.44 -0.32 -13.93 16 8 H 0.09 2.47 8.06 -52.49 -0.42 2.04 16 9 C 0.19 4.25 1.06 -90.85 -0.10 4.15 16 10 O -0.55 -12.88 13.35 -35.23 -0.47 -13.35 16 11 C 0.08 1.61 6.08 -2.84 -0.02 1.59 16 12 N -0.61 -12.14 3.61 -179.04 -0.65 -12.78 16 13 C 0.57 11.00 8.05 -12.10 -0.10 10.90 16 14 O -0.55 -11.42 17.04 5.37 0.09 -11.33 16 15 C 0.13 2.12 6.75 -82.93 -0.56 1.56 16 16 C -0.13 -1.62 9.62 -39.11 -0.38 -2.00 16 17 C -0.02 -0.16 9.71 -38.88 -0.38 -0.54 16 18 C -0.17 -1.89 5.89 -104.74 -0.62 -2.51 16 19 C 0.54 5.31 8.28 34.69 0.29 5.60 16 20 O -0.51 -6.23 17.20 -19.23 -0.33 -6.56 16 21 O -0.51 -3.51 12.70 -40.45 -0.51 -4.03 16 22 C 0.16 1.88 10.78 -17.16 -0.19 1.70 16 23 N -0.46 -6.90 7.87 -9.47 -0.07 -6.97 16 24 C 0.13 2.58 8.23 -2.97 -0.02 2.55 16 25 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.35 7.83 3.57 45.56 0.16 7.99 16 27 H 0.09 1.84 8.09 -51.92 -0.42 1.42 16 28 H 0.08 1.67 5.88 -51.93 -0.31 1.36 16 29 H 0.16 1.84 7.63 -52.49 -0.40 1.43 16 30 H 0.16 1.34 7.73 -52.49 -0.41 0.93 16 31 H 0.42 0.97 9.11 45.56 0.42 1.39 16 32 H 0.18 1.67 7.62 -52.48 -0.40 1.27 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.10 1.86 8.09 -51.93 -0.42 1.44 16 LS Contribution 300.69 15.07 4.53 4.53 Total: -1.00 -32.13 300.69 -5.12 -37.25 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -1.87 Total: 11.20 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -2.48 Total: 11.08 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.05 Total: -43.24 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.22 Total: -35.27 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.13 Total: 14.44 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.13 -5.12 -37.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.659 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds