Wall clock time and date at job start Tue Mar 31 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21492 * 119.99511 * 179.86539 * 13 12 11 15 15 C 1.48344 * 119.99971 * 359.87065 * 13 12 11 16 16 C 1.39299 * 119.56687 * 179.97438 * 15 13 12 17 17 C 1.38445 * 119.19636 * 179.97438 * 16 15 13 18 18 C 1.39913 * 118.35125 * 0.02562 * 17 16 15 19 19 C 1.47900 * 120.46598 * 179.97438 * 18 17 16 20 20 O 1.21448 * 119.99859 * 0.02562 * 19 18 17 21 21 O 1.34686 * 120.00002 * 180.02562 * 19 18 17 22 22 C 1.39771 * 119.06768 * 0.02562 * 18 17 16 23 23 N 1.31409 * 120.70692 * 359.72140 * 22 18 17 24 24 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 27 27 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 28 28 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 29 29 H 1.07999 * 120.39981 * 0.02562 * 16 15 13 30 30 H 1.07998 * 120.82127 * 180.02562 * 17 16 15 31 31 H 0.96706 * 117.00082 * 180.02562 * 21 19 18 32 32 H 1.08003 * 119.64392 * 180.02562 * 22 18 17 33 33 H 1.08999 * 113.76805 * 221.15228 * 24 12 11 34 34 H 1.09000 * 113.87378 * 89.76768 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9083 -3.3097 -0.8997 15 6 7.0335 -1.5436 -2.4308 16 6 8.3276 -1.8811 -2.8204 17 6 8.9635 -1.1176 -3.7845 18 6 8.2745 -0.0296 -4.3314 19 6 8.9094 0.8179 -5.3639 20 8 10.0365 0.5711 -5.7431 21 8 8.2378 1.8633 -5.8836 22 6 6.9781 0.2459 -3.8874 23 7 6.4077 -0.5066 -2.9734 24 6 4.1313 -2.6024 -0.0480 25 1 -0.4850 0.8401 0.0004 26 1 3.7023 0.5402 1.0280 27 1 3.4726 -1.2571 -2.2148 28 1 4.5870 0.0025 -1.5238 29 1 8.8285 -2.7287 -2.3764 30 1 9.9664 -1.3559 -4.1064 31 1 8.6939 2.3878 -6.5559 32 1 6.4376 1.0832 -4.3035 33 1 4.5862 -2.9145 0.8921 34 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606061.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:52:14 Heat of formation + Delta-G solvation = -103.234872 kcal Electronic energy + Delta-G solvation = -22801.782991 eV Core-core repulsion = 19087.058331 eV Total energy + Delta-G solvation = -3714.724661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12552 -41.32086 -40.45000 -39.12546 -37.20024 -36.25874 -34.52862 -34.01393 -32.96552 -30.71937 -28.00450 -27.07599 -26.34697 -24.81599 -23.20596 -22.01737 -20.72481 -19.55672 -19.33096 -18.73673 -18.36905 -18.10031 -17.70267 -16.89819 -16.77646 -16.61644 -15.94234 -15.52247 -15.48349 -15.14456 -14.89195 -14.63521 -14.39837 -14.30996 -14.06734 -13.88865 -13.65791 -12.93978 -12.66308 -12.63234 -12.43473 -12.02232 -11.91663 -11.72264 -11.27680 -11.12624 -11.02797 -10.84576 -10.57013 -10.33322 -9.71271 -8.40306 -6.52540 -1.06930 -0.00125 1.04216 1.28024 1.33260 1.42910 1.66999 1.74923 1.85563 2.21079 2.63767 2.75757 2.83174 3.27012 3.45821 3.53041 3.63816 3.81513 3.89774 4.09226 4.31802 4.43720 4.54033 4.60216 4.71848 4.79186 4.79828 4.90384 4.97043 5.24308 5.31120 5.46330 6.06192 6.41767 6.54019 6.59026 6.71128 6.87090 6.93565 7.15814 8.74978 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.018890 B = 0.004676 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.907823 B = 5986.036798 C = 7120.518468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.031 3.969 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.228 1.228 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.180 3.820 10 O -0.561 6.561 11 C 0.098 3.902 12 N -0.614 5.614 13 C 0.572 3.428 14 O -0.572 6.572 15 C 0.105 3.895 16 C -0.120 4.120 17 C -0.004 4.004 18 C -0.164 4.164 19 C 0.548 3.452 20 O -0.534 6.534 21 O -0.498 6.498 22 C 0.160 3.840 23 N -0.480 5.480 24 C 0.125 3.875 25 H 0.273 0.727 26 H 0.357 0.643 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.166 0.834 30 H 0.180 0.820 31 H 0.440 0.560 32 H 0.201 0.799 33 H 0.077 0.923 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.152 5.205 -11.978 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.170 4.170 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.152 1.152 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.076 0.924 9 C 0.139 3.861 10 O -0.372 6.372 11 C -0.024 4.024 12 N -0.345 5.345 13 C 0.361 3.639 14 O -0.453 6.453 15 C -0.031 4.031 16 C -0.141 4.141 17 C -0.030 4.030 18 C -0.168 4.168 19 C 0.391 3.609 20 O -0.425 6.425 21 O -0.312 6.312 22 C -0.001 4.001 23 N -0.191 5.191 24 C 0.004 3.996 25 H 0.083 0.917 26 H 0.209 0.791 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.184 0.816 30 H 0.197 0.803 31 H 0.303 0.697 32 H 0.218 0.782 33 H 0.095 0.905 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.029 4.102 -11.158 19.956 hybrid contribution 0.476 1.124 -0.571 1.347 sum 16.505 5.226 -11.729 20.912 Atomic orbital electron populations 1.69994 1.07992 1.28790 1.49343 1.25779 0.95556 1.02765 0.92910 0.86416 0.80422 0.79475 0.79929 1.18421 1.15175 1.20653 1.21331 0.89375 0.94698 1.52700 0.92389 1.20675 0.91005 0.89116 0.85303 1.86446 1.67435 1.26041 1.57317 1.24420 0.87194 0.91418 0.99405 1.50013 1.12000 1.32129 1.40342 1.18003 0.80720 0.83454 0.81709 1.90720 1.66385 1.30439 1.57791 1.21285 0.93134 0.93338 0.95388 1.22186 0.93465 1.01384 0.97031 1.21965 1.00708 0.89760 0.90527 1.20419 0.97282 0.98812 1.00277 1.20295 0.82572 0.78727 0.79275 1.90908 1.20251 1.70988 1.60403 1.84501 1.49966 1.40164 1.56574 1.23662 0.90832 0.96389 0.89173 1.67827 1.37181 1.04559 1.09501 1.23376 0.87551 0.96682 0.92034 0.91719 0.79110 0.88412 0.89123 0.81605 0.80308 0.69698 0.78212 0.90467 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.29 13.96 21.45 0.30 -51.99 16 2 C 0.03 1.62 5.47 84.66 0.46 2.09 16 3 Si 0.91 37.59 24.31 68.60 1.67 39.26 16 4 H -0.26 -10.23 7.05 99.48 0.70 -9.53 16 5 H -0.23 -8.47 5.16 99.48 0.51 -7.96 16 6 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -28.18 9.19 25.60 0.24 -27.95 16 8 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 9 C 0.18 8.03 1.06 -10.88 -0.01 8.02 16 10 O -0.56 -25.50 13.35 -148.98 -1.99 -27.49 16 11 C 0.10 3.85 6.08 86.44 0.53 4.37 16 12 N -0.61 -24.24 3.61 -842.48 -3.04 -27.28 16 13 C 0.57 21.60 8.05 86.93 0.70 22.30 16 14 O -0.57 -23.76 17.04 -3.69 -0.06 -23.83 16 15 C 0.11 3.17 6.75 41.96 0.28 3.45 16 16 C -0.12 -2.77 9.62 22.57 0.22 -2.55 16 17 C 0.00 -0.07 9.71 22.73 0.22 0.15 16 18 C -0.16 -3.01 5.89 -19.94 -0.12 -3.12 16 19 C 0.55 8.80 8.28 70.38 0.58 9.38 16 20 O -0.53 -11.22 17.20 20.01 0.34 -10.88 16 21 O -0.50 -4.82 12.70 -55.96 -0.71 -5.53 16 22 C 0.16 3.28 10.78 85.13 0.92 4.20 16 23 N -0.48 -13.50 7.87 -183.87 -1.45 -14.95 16 24 C 0.13 5.13 8.23 86.49 0.71 5.85 16 25 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.36 15.16 3.57 -74.06 -0.26 14.90 16 27 H 0.10 3.75 8.09 -2.38 -0.02 3.73 16 28 H 0.09 3.43 5.88 -2.39 -0.01 3.41 16 29 H 0.17 3.54 7.63 -2.91 -0.02 3.52 16 30 H 0.18 2.41 7.73 -2.91 -0.02 2.39 16 31 H 0.44 0.20 9.11 -74.05 -0.67 -0.47 16 32 H 0.20 3.00 7.62 -2.91 -0.02 2.98 16 33 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.11 4.14 8.09 -2.39 -0.02 4.12 16 Total: -1.00 -69.90 300.69 -0.17 -70.07 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.05 Total: 26.43 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 4.73 Total: 26.19 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.19 Total: -94.22 kcal Atomic # 8 Polarization: -65.31 SS G_CDS: -2.42 Total: -67.73 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 1.67 Total: 39.26 kcal Total: -69.90 -0.17 -70.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606061.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.166 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds