Wall clock time and date at job start Tue Mar 31 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47086 * 275.29597 * 3 2 1 5 5 H 1.48503 * 109.47116 * 35.29682 * 3 2 1 6 6 H 1.48504 * 109.47137 * 155.29611 * 3 2 1 7 7 C 1.39936 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00197 * 346.74834 * 7 2 1 9 9 C 1.41412 * 119.99861 * 166.74591 * 7 2 1 10 10 C 1.40781 * 120.20924 * 151.63609 * 9 7 2 11 11 C 1.37655 * 119.89785 * 180.25479 * 10 9 7 12 12 C 1.38518 * 120.32495 * 359.49468 * 11 10 9 13 13 C 1.39299 * 120.42611 * 0.25153 * 12 11 10 14 14 N 1.39746 * 119.95515 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99876 * 33.38366 * 14 13 12 16 16 O 1.21381 * 119.99822 * 4.88769 * 15 14 13 17 17 C 1.49355 * 120.00139 * 184.87923 * 15 14 13 18 18 O 1.21357 * 119.99888 * 0.02562 * 17 15 14 19 19 N 1.34781 * 119.99784 * 180.02562 * 17 15 14 20 20 C 1.46504 * 119.99497 * 180.02562 * 19 17 15 21 21 C 1.50704 * 109.46881 * 180.02562 * 20 19 17 22 22 O 1.20822 * 119.99883 * 359.97438 * 21 20 19 23 23 O 1.34222 * 119.99545 * 179.97438 * 21 20 19 24 24 C 1.38341 * 120.09281 * 0.02562 * 13 12 11 25 25 H 0.97001 * 119.99607 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.05399 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.83952 * 179.77162 * 11 10 9 28 28 H 1.07997 * 119.78581 * 180.23428 * 12 11 10 29 29 H 0.96997 * 119.99897 * 213.39109 * 14 13 12 30 30 H 0.96997 * 120.00325 * 0.02562 * 19 17 15 31 31 H 1.09001 * 109.46784 * 299.99743 * 20 19 17 32 32 H 1.09000 * 109.47174 * 59.99694 * 20 19 17 33 33 H 0.96706 * 116.99440 * 179.97438 * 23 21 20 34 34 H 1.07998 * 120.16575 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3779 2.1110 -1.3941 5 1 1.5002 2.6178 0.8090 6 1 3.5914 1.4103 0.5851 7 6 2.0079 -1.2119 0.0005 8 1 1.4894 -2.1347 0.2153 9 6 3.3937 -1.2284 -0.2802 10 6 4.2150 -2.2336 0.2649 11 6 5.5641 -2.2404 -0.0084 12 6 6.1170 -1.2687 -0.8262 13 6 5.3161 -0.2710 -1.3770 14 7 5.8842 0.7042 -2.2012 15 6 6.9246 0.3902 -2.9982 16 8 7.3113 -0.7583 -3.0670 17 6 7.6015 1.4552 -3.7970 18 8 7.2150 2.6035 -3.7280 19 7 8.6416 1.1410 -4.5945 20 6 9.3059 2.1859 -5.3776 21 6 10.4274 1.5766 -6.1789 22 8 10.6493 0.3913 -6.1032 23 8 11.1798 2.3507 -6.9766 24 6 3.9591 -0.2441 -1.1093 25 1 -0.4849 0.8401 -0.0004 26 1 3.7879 -2.9959 0.8995 27 1 6.1939 -3.0098 0.4133 28 1 7.1759 -1.2846 -1.0379 29 1 5.5297 1.6071 -2.1995 30 1 8.9503 0.2232 -4.6500 31 1 8.5856 2.6466 -6.0536 32 1 9.7090 2.9431 -4.7051 33 1 11.8877 1.9148 -7.4706 34 1 3.3371 0.5292 -1.5354 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:17 Heat of formation + Delta-G solvation = -129.309011 kcal Electronic energy + Delta-G solvation = -22096.008669 eV Core-core repulsion = 18380.153349 eV Total energy + Delta-G solvation = -3715.855320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16602 -40.51954 -38.97434 -37.46761 -36.83807 -35.34642 -34.34860 -33.37670 -30.45390 -29.56129 -28.82313 -25.24529 -24.79547 -22.22364 -21.77717 -21.10031 -19.96514 -19.07690 -18.50245 -17.61956 -16.90572 -16.87054 -16.70442 -16.15686 -15.70705 -15.45747 -15.18664 -14.58696 -14.41257 -14.10003 -13.57089 -13.35672 -13.14544 -13.03554 -12.58739 -12.13587 -12.11732 -11.97664 -11.61808 -11.26046 -10.91187 -10.83923 -10.53076 -10.23692 -9.87934 -9.76399 -9.74496 -9.41235 -9.08997 -7.69656 -7.31881 -6.97489 -4.55282 1.24675 1.55925 1.84347 2.45150 2.60311 2.66840 3.03325 3.14084 3.25107 3.31251 3.59803 3.92409 4.40028 4.48700 4.56586 4.67038 4.77230 5.34554 5.68294 5.87651 5.91695 6.17896 6.31810 6.42883 6.53020 6.63805 6.79975 7.02102 7.19217 7.25729 7.29260 7.49026 7.63320 7.68506 7.83479 7.99197 8.15439 8.31472 8.57646 8.74108 10.05018 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.003495 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.155874 B = 8009.463849 C = 8797.233879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.240 1.240 7 C -0.442 4.442 8 H 0.093 0.907 9 C 0.104 3.896 10 C -0.209 4.209 11 C -0.072 4.072 12 C -0.230 4.230 13 C 0.165 3.835 14 N -0.634 5.634 15 C 0.503 3.497 16 O -0.496 6.496 17 C 0.519 3.481 18 O -0.515 6.515 19 N -0.700 5.700 20 C 0.126 3.874 21 C 0.478 3.522 22 O -0.505 6.505 23 O -0.509 6.509 24 C -0.253 4.253 25 H 0.286 0.714 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.414 0.586 30 H 0.426 0.574 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.418 0.582 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.934 7.147 -9.986 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.138 4.138 3 Si 0.738 3.262 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.163 1.163 7 C -0.471 4.471 8 H 0.111 0.889 9 C 0.100 3.900 10 C -0.229 4.229 11 C -0.091 4.091 12 C -0.251 4.251 13 C 0.073 3.927 14 N -0.279 5.279 15 C 0.283 3.717 16 O -0.370 6.370 17 C 0.300 3.700 18 O -0.390 6.390 19 N -0.359 5.359 20 C 0.001 3.999 21 C 0.319 3.681 22 O -0.392 6.392 23 O -0.321 6.321 24 C -0.274 4.274 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.250 0.750 30 H 0.266 0.734 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.278 0.722 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.437 7.123 -9.756 20.399 hybrid contribution 0.637 0.555 -0.526 0.995 sum 17.074 7.678 -10.283 21.359 Atomic orbital electron populations 1.69658 1.07997 1.30257 1.35534 1.26184 0.94850 1.01747 0.90993 0.86331 0.81465 0.79692 0.78668 1.19835 1.21947 1.16312 1.19504 0.91365 0.95747 1.40469 0.88889 1.17504 0.93291 0.90342 0.88814 1.21085 0.92966 1.03035 1.05771 1.20538 0.94990 0.96806 0.96794 1.20330 0.98487 0.99834 1.06473 1.17439 0.91898 0.90716 0.92641 1.43187 1.31175 1.14463 1.39104 1.19744 0.82232 0.88355 0.81342 1.90813 1.63101 1.19653 1.63409 1.20243 0.80489 0.89040 0.80260 1.90786 1.63581 1.20444 1.64146 1.45458 1.32822 1.13448 1.44187 1.20648 0.92635 0.91012 0.95564 1.23128 0.82261 0.85040 0.77672 1.90792 1.68412 1.17013 1.62976 1.84470 1.46242 1.45381 1.56012 1.20699 0.91976 1.05794 1.08934 0.90393 0.87823 0.88128 0.87340 0.74963 0.73437 0.86243 0.86248 0.72168 0.87919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.36 13.93 55.55 0.77 -20.59 16 2 C 0.08 2.09 5.47 -17.34 -0.09 1.99 16 3 Si 0.91 20.27 24.37 -169.99 -4.14 16.12 16 4 H -0.27 -5.81 6.77 56.52 0.38 -5.43 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.24 -5.38 6.48 56.52 0.37 -5.02 16 7 C -0.44 -11.75 9.61 -37.74 -0.36 -12.11 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.10 2.60 5.19 -106.85 -0.55 2.04 16 10 C -0.21 -4.78 9.79 -38.83 -0.38 -5.16 16 11 C -0.07 -1.53 10.02 -39.69 -0.40 -1.93 16 12 C -0.23 -4.97 8.66 -39.08 -0.34 -5.31 16 13 C 0.16 3.59 6.27 -83.82 -0.53 3.06 16 14 N -0.63 -11.64 5.32 -10.34 -0.06 -11.70 16 15 C 0.50 8.51 7.62 -11.63 -0.09 8.42 16 16 O -0.50 -9.40 14.13 5.47 0.08 -9.32 16 17 C 0.52 7.14 7.89 -11.63 -0.09 7.05 16 18 O -0.51 -7.63 16.48 5.49 0.09 -7.54 16 19 N -0.70 -7.65 5.52 -61.94 -0.34 -7.99 16 20 C 0.13 0.94 6.27 -5.19 -0.03 0.91 16 21 C 0.48 3.55 8.40 36.01 0.30 3.85 16 22 O -0.50 -5.47 16.43 -18.75 -0.31 -5.78 16 23 O -0.51 -2.40 13.42 -39.24 -0.53 -2.92 16 24 C -0.25 -5.98 6.83 -38.66 -0.26 -6.24 16 25 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 26 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 27 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 28 H 0.11 2.25 6.39 -52.49 -0.34 1.92 16 29 H 0.41 6.86 8.29 -40.82 -0.34 6.52 16 30 H 0.43 4.92 6.91 -40.82 -0.28 4.64 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.42 0.30 9.10 45.56 0.41 0.71 16 34 H 0.10 2.40 4.20 -52.49 -0.22 2.18 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -31.73 305.60 -4.72 -36.45 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -2.06 Total: 12.08 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.83 Total: -3.42 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.38 Total: -40.28 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.67 Total: -25.56 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.14 Total: 16.12 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.73 -4.72 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.859 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds