Wall clock time and date at job start Tue Mar 31 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86797 * 120.00263 * 2 1 4 4 H 1.48500 * 109.47086 * 275.29597 * 3 2 1 5 5 H 1.48503 * 109.47116 * 35.29682 * 3 2 1 6 6 H 1.48504 * 109.47137 * 155.29611 * 3 2 1 7 7 C 1.39936 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00197 * 346.74834 * 7 2 1 9 9 C 1.41412 * 119.99861 * 166.74591 * 7 2 1 10 10 C 1.40781 * 120.20924 * 151.63609 * 9 7 2 11 11 C 1.37655 * 119.89785 * 180.25479 * 10 9 7 12 12 C 1.38518 * 120.32495 * 359.49468 * 11 10 9 13 13 C 1.39299 * 120.42611 * 0.25153 * 12 11 10 14 14 N 1.39746 * 119.95515 * 180.02562 * 13 12 11 15 15 C 1.34771 * 119.99876 * 33.38366 * 14 13 12 16 16 O 1.21381 * 119.99822 * 4.88769 * 15 14 13 17 17 C 1.49355 * 120.00139 * 184.87923 * 15 14 13 18 18 O 1.21357 * 119.99888 * 0.02562 * 17 15 14 19 19 N 1.34781 * 119.99784 * 180.02562 * 17 15 14 20 20 C 1.46504 * 119.99497 * 180.02562 * 19 17 15 21 21 C 1.50704 * 109.46881 * 180.02562 * 20 19 17 22 22 O 1.20822 * 119.99883 * 359.97438 * 21 20 19 23 23 O 1.34222 * 119.99545 * 179.97438 * 21 20 19 24 24 C 1.38341 * 120.09281 * 0.02562 * 13 12 11 25 25 H 0.97001 * 119.99607 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.05399 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.83952 * 179.77162 * 11 10 9 28 28 H 1.07997 * 119.78581 * 180.23428 * 12 11 10 29 29 H 0.96997 * 119.99897 * 213.39109 * 14 13 12 30 30 H 0.96997 * 120.00325 * 0.02562 * 19 17 15 31 31 H 1.09001 * 109.46784 * 299.99743 * 20 19 17 32 32 H 1.09000 * 109.47174 * 59.99694 * 20 19 17 33 33 H 0.96706 * 116.99440 * 179.97438 * 23 21 20 34 34 H 1.07998 * 120.16575 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3779 2.1110 -1.3941 5 1 1.5002 2.6178 0.8090 6 1 3.5914 1.4103 0.5851 7 6 2.0079 -1.2119 0.0005 8 1 1.4894 -2.1347 0.2153 9 6 3.3937 -1.2284 -0.2802 10 6 4.2150 -2.2336 0.2649 11 6 5.5641 -2.2404 -0.0084 12 6 6.1170 -1.2687 -0.8262 13 6 5.3161 -0.2710 -1.3770 14 7 5.8842 0.7042 -2.2012 15 6 6.9246 0.3902 -2.9982 16 8 7.3113 -0.7583 -3.0670 17 6 7.6015 1.4552 -3.7970 18 8 7.2150 2.6035 -3.7280 19 7 8.6416 1.1410 -4.5945 20 6 9.3059 2.1859 -5.3776 21 6 10.4274 1.5766 -6.1789 22 8 10.6493 0.3913 -6.1032 23 8 11.1798 2.3507 -6.9766 24 6 3.9591 -0.2441 -1.1093 25 1 -0.4849 0.8401 -0.0004 26 1 3.7879 -2.9959 0.8995 27 1 6.1939 -3.0098 0.4133 28 1 7.1759 -1.2846 -1.0379 29 1 5.5297 1.6071 -2.1995 30 1 8.9503 0.2232 -4.6500 31 1 8.5856 2.6466 -6.0536 32 1 9.7090 2.9431 -4.7051 33 1 11.8877 1.9148 -7.4706 34 1 3.3371 0.5292 -1.5354 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594610828.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:17 Heat of formation + Delta-G solvation = -154.993074 kcal Electronic energy + Delta-G solvation = -22097.122414 eV Core-core repulsion = 18380.153349 eV Total energy + Delta-G solvation = -3716.969065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20957 -41.39053 -40.25890 -39.07404 -37.39231 -36.53735 -35.70660 -35.13486 -32.29731 -30.83682 -29.99175 -27.12842 -26.00739 -23.53712 -23.07978 -22.21088 -21.40323 -20.28578 -19.40244 -19.10940 -18.17516 -17.90790 -17.58898 -17.36975 -16.87880 -16.81425 -16.44760 -16.29164 -15.67275 -15.23723 -15.11825 -14.78290 -14.35748 -14.04000 -13.93683 -13.86677 -13.63529 -13.03009 -12.71055 -12.67154 -12.63822 -12.21682 -12.00387 -11.89560 -11.59037 -11.47652 -10.99497 -10.74417 -10.62732 -9.53375 -9.02940 -8.89149 -6.53950 -0.02409 0.75475 0.79308 0.96231 1.00574 1.25295 1.40534 1.49355 1.93196 1.97720 2.11321 2.48695 2.60891 3.20977 3.46924 4.06755 4.15099 4.20714 4.23841 4.47226 4.65007 4.71143 4.81671 4.86665 4.89780 5.25113 5.43905 5.48312 5.56500 5.75367 5.82922 5.87470 6.14179 6.21744 6.37404 6.49231 6.65827 6.78452 6.80929 6.84076 8.18746 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.003495 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.155874 B = 8009.463849 C = 8797.233879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.963 3.037 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.477 4.477 8 H 0.061 0.939 9 C 0.087 3.913 10 C -0.222 4.222 11 C -0.066 4.066 12 C -0.226 4.226 13 C 0.166 3.834 14 N -0.636 5.636 15 C 0.504 3.496 16 O -0.517 6.517 17 C 0.531 3.469 18 O -0.524 6.524 19 N -0.688 5.688 20 C 0.121 3.879 21 C 0.490 3.510 22 O -0.544 6.544 23 O -0.499 6.499 24 C -0.263 4.263 25 H 0.294 0.706 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.121 0.879 29 H 0.423 0.577 30 H 0.424 0.576 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.437 0.563 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.797 8.804 -11.172 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.171 4.171 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.208 1.208 6 H -0.167 1.167 7 C -0.506 4.506 8 H 0.079 0.921 9 C 0.084 3.916 10 C -0.242 4.242 11 C -0.085 4.085 12 C -0.247 4.247 13 C 0.073 3.927 14 N -0.282 5.282 15 C 0.286 3.714 16 O -0.392 6.392 17 C 0.311 3.689 18 O -0.400 6.400 19 N -0.346 5.346 20 C -0.003 4.003 21 C 0.333 3.667 22 O -0.434 6.434 23 O -0.313 6.313 24 C -0.284 4.284 25 H 0.104 0.896 26 H 0.128 0.872 27 H 0.154 0.846 28 H 0.139 0.861 29 H 0.261 0.739 30 H 0.263 0.737 31 H 0.156 0.844 32 H 0.158 0.842 33 H 0.300 0.700 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.346 8.804 -10.991 23.929 hybrid contribution -0.017 -0.042 -0.264 0.268 sum 19.329 8.762 -11.255 24.022 Atomic orbital electron populations 1.69692 1.09119 1.31473 1.37440 1.26875 0.95482 1.04340 0.90389 0.85539 0.80018 0.76290 0.79504 1.18197 1.20785 1.16707 1.19488 0.92558 0.95239 1.43327 0.92111 1.17662 0.92887 0.91643 0.89431 1.21282 0.93855 1.02896 1.06127 1.20900 0.94488 0.97236 0.95861 1.20659 0.99120 0.99395 1.05480 1.17488 0.91369 0.91287 0.92548 1.43153 1.31715 1.14253 1.39114 1.20308 0.81396 0.88922 0.80782 1.90797 1.63494 1.20895 1.63988 1.19460 0.81103 0.87782 0.80581 1.90797 1.64180 1.20243 1.64774 1.45425 1.31666 1.14259 1.43234 1.20950 0.93104 0.90166 0.96048 1.23006 0.82025 0.84346 0.77323 1.90794 1.69571 1.18627 1.64412 1.84429 1.46501 1.44909 1.55436 1.20744 0.92980 1.05689 1.09013 0.89567 0.87192 0.84588 0.86074 0.73900 0.73677 0.84383 0.84206 0.69962 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.40 13.93 21.82 0.30 -46.10 16 2 C 0.04 2.30 5.47 85.25 0.47 2.77 16 3 Si 0.96 41.67 24.37 68.60 1.67 43.34 16 4 H -0.26 -10.35 6.77 99.48 0.67 -9.68 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.24 -10.57 6.48 99.48 0.64 -9.93 16 7 C -0.48 -26.43 9.61 23.46 0.23 -26.20 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 C 0.09 4.39 5.19 -21.31 -0.11 4.28 16 10 C -0.22 -10.10 9.79 22.75 0.22 -9.87 16 11 C -0.07 -2.66 10.02 22.20 0.22 -2.44 16 12 C -0.23 -9.21 8.66 22.59 0.20 -9.02 16 13 C 0.17 6.95 6.27 38.16 0.24 7.19 16 14 N -0.64 -22.05 5.32 -304.98 -1.62 -23.67 16 15 C 0.50 15.95 7.62 87.24 0.67 16.62 16 16 O -0.52 -18.55 14.13 -3.34 -0.05 -18.59 16 17 C 0.53 13.21 7.89 87.24 0.69 13.90 16 18 O -0.52 -13.97 16.48 -3.27 -0.05 -14.03 16 19 N -0.69 -13.21 5.52 -468.22 -2.59 -15.80 16 20 C 0.12 1.41 6.27 85.63 0.54 1.94 16 21 C 0.49 5.94 8.40 71.24 0.60 6.54 16 22 O -0.54 -10.76 16.43 21.98 0.36 -10.40 16 23 O -0.50 -3.09 13.42 -51.34 -0.69 -3.78 16 24 C -0.26 -12.28 6.83 22.86 0.16 -12.12 16 25 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 26 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 27 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 28 H 0.12 4.67 6.39 -2.91 -0.02 4.65 16 29 H 0.42 13.07 8.29 -92.71 -0.77 12.30 16 30 H 0.42 8.90 6.91 -92.71 -0.64 8.26 16 31 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.44 -0.70 9.10 -74.05 -0.67 -1.38 16 34 H 0.10 4.74 4.20 -2.91 -0.01 4.73 16 Total: -1.00 -69.06 305.60 0.48 -68.59 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.97 Total: 26.84 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 4.10 Total: -6.41 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -3.90 Total: -85.56 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.43 Total: -46.80 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 1.67 Total: 43.34 kcal Total: -69.06 0.48 -68.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610828.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.406 kcal (2) G-P(sol) polarization free energy of solvation -69.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds