Wall clock time and date at job start Tue Mar 31 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34754 * 117.00089 * 2 1 4 4 O 1.21515 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.47391 * 120.00390 * 179.97438 * 3 2 1 6 6 C 1.40993 * 119.88806 * 359.97438 * 5 3 2 7 7 C 1.38873 * 118.70542 * 179.97438 * 6 5 3 8 8 C 1.43205 * 120.73639 * 179.97438 * 7 6 5 9 9 N 6.01581 * 161.48588 * 179.97438 * 2 1 3 10 10 C 1.46518 * 118.52481 * 0.02562 * 7 6 5 11 11 O 1.21825 * 120.16467 * 179.97438 * 10 7 6 12 12 N 1.34640 * 119.67751 * 359.97438 * 10 7 6 13 13 C 1.46500 * 119.34908 * 180.02562 * 12 10 7 14 14 C 1.53006 * 109.46998 * 89.99931 * 13 12 10 15 15 H 1.09001 * 109.46801 * 60.00058 * 14 13 12 16 16 O 1.42895 * 109.47036 * 299.99689 * 14 13 12 17 17 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99963 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00270 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00302 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 119.99832 * 0.02562 * 19 17 14 22 22 H 1.48506 * 109.47310 * 89.99428 * 21 19 17 23 23 H 1.48491 * 109.47296 * 209.99911 * 21 19 17 24 24 H 1.48502 * 109.46905 * 329.99956 * 21 19 17 25 25 C 1.34296 * 121.30279 * 0.27254 * 12 10 7 26 26 H 1.09007 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47017 * 300.00177 * 1 2 3 28 28 H 1.08998 * 109.47021 * 60.00354 * 1 2 3 29 29 H 1.07999 * 120.64990 * 359.97438 * 6 5 3 30 30 H 1.08993 * 109.47452 * 330.00009 * 13 12 10 31 31 H 1.09000 * 109.47175 * 209.99799 * 13 12 10 32 32 H 0.96695 * 114.00385 * 300.00682 * 16 14 13 33 33 H 0.97002 * 119.99998 * 179.97438 * 20 19 17 34 34 H 1.07997 * 119.21356 * 179.70301 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5357 1.2779 0.0006 6 6 4.3013 0.0939 0.0017 7 6 5.6863 0.1953 0.0016 8 6 6.5061 -0.9789 0.0033 9 7 7.1564 -1.9102 0.0009 10 6 6.2902 1.5303 0.0010 11 8 7.5021 1.6539 0.0015 12 7 5.4991 2.6198 0.0000 13 6 6.1105 3.9511 -0.0011 14 6 6.3235 4.4132 -1.4441 15 1 5.3631 4.4540 -1.9580 16 8 7.1851 3.4928 -2.1168 17 6 6.9519 5.7829 -1.4452 18 1 7.1764 6.2748 -0.5103 19 6 7.2401 6.4082 -2.6398 20 7 7.7880 7.6038 -2.6408 21 14 6.8510 5.5578 -4.2568 22 1 5.4754 5.9166 -4.6865 23 1 7.8224 5.9939 -5.2918 24 1 6.9456 4.0867 -4.0777 25 6 4.1606 2.5102 0.0050 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.8201 -0.8729 0.0025 30 1 7.0709 3.9103 0.5128 31 1 5.4534 4.6532 0.5120 32 1 8.0594 3.4055 -1.7131 33 1 7.9911 8.0435 -3.4812 34 1 3.5584 3.4066 0.0089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656201852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:59 Heat of formation + Delta-G solvation = -100.431471 kcal Electronic energy + Delta-G solvation = -22859.013618 eV Core-core repulsion = 19144.410522 eV Total energy + Delta-G solvation = -3714.603096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64354 -40.36190 -37.30527 -36.99482 -36.51493 -36.14759 -34.27417 -32.44090 -30.74010 -29.61242 -27.99243 -26.07917 -25.14077 -23.69786 -22.19753 -20.97253 -19.43834 -18.05781 -17.72828 -17.31062 -17.07487 -16.64299 -16.32463 -16.11830 -15.40362 -14.86469 -14.37167 -14.25447 -14.23402 -13.69320 -13.58347 -13.39705 -13.27232 -12.93906 -12.74822 -12.54410 -12.23357 -12.21507 -11.83812 -11.61150 -11.14827 -11.04915 -10.84653 -10.82790 -10.62050 -10.12979 -10.00632 -9.29404 -8.82607 -8.58748 -8.16290 -6.30928 -4.46629 0.21168 0.93328 2.04393 2.40407 2.46906 2.89403 2.97493 3.27512 3.39299 3.63763 3.70173 3.83777 4.26677 4.37995 4.38400 4.50189 4.59924 4.85767 4.94242 5.00548 5.17285 5.23172 5.36882 5.49738 5.54977 5.58260 5.66536 5.93926 6.09428 6.14085 6.65777 6.94096 7.26798 7.50614 7.57555 7.76891 8.06326 8.59564 8.81228 9.30704 10.78624 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.005221 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.261257 B = 5361.339480 C = 6566.325329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.532 3.468 4 O -0.513 6.513 5 C -0.269 4.269 6 C 0.084 3.916 7 C -0.172 4.172 8 C 0.285 3.715 9 N -0.423 5.423 10 C 0.545 3.455 11 O -0.495 6.495 12 N -0.466 5.466 13 C 0.057 3.943 14 C 0.186 3.814 15 H 0.062 0.938 16 O -0.576 6.576 17 C -0.572 4.572 18 H 0.078 0.922 19 C 0.091 3.909 20 N -0.883 5.883 21 Si 0.868 3.132 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.217 1.217 25 C 0.269 3.731 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.156 0.844 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.367 0.633 33 H 0.269 0.731 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 -12.641 6.657 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.273 6.273 3 C 0.378 3.622 4 O -0.403 6.403 5 C -0.276 4.276 6 C 0.059 3.941 7 C -0.180 4.180 8 C -0.029 4.029 9 N -0.100 5.100 10 C 0.341 3.659 11 O -0.371 6.371 12 N -0.167 5.167 13 C -0.062 4.062 14 C 0.127 3.873 15 H 0.079 0.921 16 O -0.383 6.383 17 C -0.609 4.609 18 H 0.096 0.904 19 C -0.115 4.115 20 N -0.519 5.519 21 Si 0.694 3.306 22 H -0.212 1.212 23 H -0.219 1.219 24 H -0.140 1.140 25 C 0.128 3.872 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.215 0.785 33 H 0.078 0.922 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -13.304 -13.578 6.176 19.988 hybrid contribution -0.264 0.476 -0.524 0.756 sum -13.568 -13.102 5.652 19.691 Atomic orbital electron populations 1.23286 0.75656 1.03749 1.02805 1.86508 1.23717 1.32402 1.84645 1.20286 0.87812 0.81583 0.72543 1.90882 1.66538 1.35774 1.47091 1.17987 0.90426 0.92628 1.26596 1.21823 0.90889 0.98813 0.82595 1.17483 0.91135 0.87975 1.21424 1.24572 0.93093 0.92078 0.93199 1.81202 1.07157 1.11352 1.10243 1.17795 0.86902 0.83294 0.77864 1.90932 1.12525 1.85663 1.47931 1.45612 1.05625 1.11599 1.53829 1.23517 1.01046 0.77362 1.04298 1.20136 0.92442 0.89387 0.85301 0.92066 1.86662 1.28475 1.65819 1.57314 1.21219 1.44498 0.99877 0.95351 0.90392 1.24912 0.92646 0.94039 0.99910 1.69920 1.40293 1.13824 1.27857 0.87059 0.77648 0.84051 0.81861 1.21168 1.21899 1.13954 1.22527 0.84259 0.99674 0.80775 0.88013 0.91722 0.91663 0.82643 0.87167 0.87582 0.78484 0.92188 0.79580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.57 101.05 1.07 1.30 16 2 O -0.36 -3.12 9.83 -40.64 -0.40 -3.52 16 3 C 0.53 5.53 7.88 34.46 0.27 5.80 16 4 O -0.51 -6.46 16.06 -19.28 -0.31 -6.77 16 5 C -0.27 -2.72 5.86 -105.15 -0.62 -3.34 16 6 C 0.08 0.82 9.43 -38.30 -0.36 0.46 16 7 C -0.17 -2.24 5.93 -104.40 -0.62 -2.86 16 8 C 0.29 4.26 15.06 -22.47 -0.34 3.92 16 9 N -0.42 -7.05 18.54 41.84 0.78 -6.28 16 10 C 0.55 8.43 7.08 -12.99 -0.09 8.33 16 11 O -0.49 -9.33 14.91 -4.69 -0.07 -9.40 16 12 N -0.47 -6.30 2.50 -117.35 -0.29 -6.60 16 13 C 0.06 0.87 4.99 -4.04 -0.02 0.85 16 14 C 0.19 3.73 2.58 -27.88 -0.07 3.66 16 15 H 0.06 1.23 7.57 -51.93 -0.39 0.83 16 16 O -0.58 -12.34 8.93 -45.00 -0.40 -12.74 16 17 C -0.57 -14.21 9.34 -34.44 -0.32 -14.53 16 18 H 0.08 2.06 7.99 -52.48 -0.42 1.64 16 19 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 20 N -0.88 -25.40 13.96 55.43 0.77 -24.63 16 21 Si 0.87 20.60 26.99 -169.99 -4.59 16.01 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.22 -5.11 5.30 56.52 0.30 -4.81 16 25 C 0.27 2.89 9.79 -16.50 -0.16 2.73 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.16 1.13 7.65 -52.49 -0.40 0.72 16 30 H 0.11 1.80 7.37 -51.93 -0.38 1.42 16 31 H 0.11 1.34 7.97 -51.93 -0.41 0.93 16 32 H 0.37 7.65 8.39 45.56 0.38 8.03 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.19 1.65 7.47 -52.49 -0.39 1.26 16 LS Contribution 312.32 15.07 4.71 4.71 Total: -1.00 -32.99 312.32 -3.69 -36.68 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -2.52 Total: 3.84 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -1.36 Total: 8.68 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 1.26 Total: -37.50 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -1.18 Total: -32.42 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.59 Total: 16.01 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.99 -3.69 -36.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656201852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.749 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds