Wall clock time and date at job start Tue Mar 31 2020 03:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34754 * 117.00089 * 2 1 4 4 O 1.21515 * 119.99949 * 359.97438 * 3 2 1 5 5 C 1.47391 * 120.00390 * 179.97438 * 3 2 1 6 6 C 1.40993 * 119.88806 * 359.97438 * 5 3 2 7 7 C 1.38873 * 118.70542 * 179.97438 * 6 5 3 8 8 C 1.43205 * 120.73639 * 179.97438 * 7 6 5 9 9 N 6.01581 * 161.48588 * 179.97438 * 2 1 3 10 10 C 1.46518 * 118.52481 * 0.02562 * 7 6 5 11 11 O 1.21825 * 120.16467 * 179.97438 * 10 7 6 12 12 N 1.34640 * 119.67751 * 359.97438 * 10 7 6 13 13 C 1.46500 * 119.34908 * 180.02562 * 12 10 7 14 14 C 1.53006 * 109.46998 * 89.99931 * 13 12 10 15 15 H 1.09001 * 109.46801 * 60.00058 * 14 13 12 16 16 O 1.42895 * 109.47036 * 299.99689 * 14 13 12 17 17 C 1.50699 * 109.46866 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99963 * 359.97438 * 17 14 13 19 19 C 1.37874 * 120.00270 * 179.97438 * 17 14 13 20 20 N 1.31513 * 120.00302 * 179.97438 * 19 17 14 21 21 Si 1.86805 * 119.99832 * 0.02562 * 19 17 14 22 22 H 1.48506 * 109.47310 * 89.99428 * 21 19 17 23 23 H 1.48491 * 109.47296 * 209.99911 * 21 19 17 24 24 H 1.48502 * 109.46905 * 329.99956 * 21 19 17 25 25 C 1.34296 * 121.30279 * 0.27254 * 12 10 7 26 26 H 1.09007 * 109.46739 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47017 * 300.00177 * 1 2 3 28 28 H 1.08998 * 109.47021 * 60.00354 * 1 2 3 29 29 H 1.07999 * 120.64990 * 359.97438 * 6 5 3 30 30 H 1.08993 * 109.47452 * 330.00009 * 13 12 10 31 31 H 1.09000 * 109.47175 * 209.99799 * 13 12 10 32 32 H 0.96695 * 114.00385 * 300.00682 * 16 14 13 33 33 H 0.97002 * 119.99998 * 179.97438 * 20 19 17 34 34 H 1.07997 * 119.21356 * 179.70301 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 -0.0005 5 6 3.5357 1.2779 0.0006 6 6 4.3013 0.0939 0.0017 7 6 5.6863 0.1953 0.0016 8 6 6.5061 -0.9789 0.0033 9 7 7.1564 -1.9102 0.0009 10 6 6.2902 1.5303 0.0010 11 8 7.5021 1.6539 0.0015 12 7 5.4991 2.6198 0.0000 13 6 6.1105 3.9511 -0.0011 14 6 6.3235 4.4132 -1.4441 15 1 5.3631 4.4540 -1.9580 16 8 7.1851 3.4928 -2.1168 17 6 6.9519 5.7829 -1.4452 18 1 7.1764 6.2748 -0.5103 19 6 7.2401 6.4082 -2.6398 20 7 7.7880 7.6038 -2.6408 21 14 6.8510 5.5578 -4.2568 22 1 5.4754 5.9166 -4.6865 23 1 7.8224 5.9939 -5.2918 24 1 6.9456 4.0867 -4.0777 25 6 4.1606 2.5102 0.0050 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.8201 -0.8729 0.0025 30 1 7.0709 3.9103 0.5128 31 1 5.4534 4.6532 0.5120 32 1 8.0594 3.4055 -1.7131 33 1 7.9911 8.0435 -3.4812 34 1 3.5584 3.4066 0.0089 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656201852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:59 Heat of formation + Delta-G solvation = -123.563364 kcal Electronic energy + Delta-G solvation = -22860.016692 eV Core-core repulsion = 19144.410522 eV Total energy + Delta-G solvation = -3715.606170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.70341 -41.18594 -38.52063 -38.20579 -37.58592 -37.30277 -35.42949 -34.44170 -31.73602 -31.09468 -28.67063 -27.57513 -26.16526 -24.72493 -23.45843 -22.25303 -20.48842 -19.55151 -18.83381 -18.31105 -18.08704 -17.58368 -17.22842 -17.16338 -16.96008 -16.44989 -15.85394 -15.77098 -15.16636 -14.89263 -14.58696 -14.50122 -14.30694 -14.28334 -13.85544 -13.71269 -13.56846 -13.32052 -13.07115 -12.82412 -12.79674 -12.63282 -12.14848 -11.71107 -11.68337 -11.41995 -11.36707 -11.05023 -10.82405 -10.26084 -9.27340 -8.37003 -6.52754 -0.72293 0.02757 0.99394 1.37916 1.40487 1.46758 1.53642 1.74083 1.90991 1.99870 2.41212 2.64166 2.80713 3.02019 3.30855 3.55655 3.57905 3.73979 3.90921 4.03632 4.15701 4.39335 4.45196 4.50160 4.59901 4.69376 4.76110 4.88936 5.06347 5.24277 5.38379 5.41808 5.69234 6.03733 6.45212 6.59964 6.64869 6.73303 7.06432 7.28513 8.76149 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.005221 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.261257 B = 5361.339480 C = 6566.325329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.539 3.461 4 O -0.534 6.534 5 C -0.257 4.257 6 C 0.123 3.877 7 C -0.193 4.193 8 C 0.301 3.699 9 N -0.464 5.464 10 C 0.539 3.461 11 O -0.542 6.542 12 N -0.466 5.466 13 C 0.071 3.929 14 C 0.185 3.815 15 H 0.072 0.928 16 O -0.582 6.582 17 C -0.562 4.562 18 H 0.053 0.947 19 C 0.037 3.963 20 N -0.933 5.933 21 Si 0.928 3.072 22 H -0.278 1.278 23 H -0.304 1.304 24 H -0.212 1.212 25 C 0.273 3.727 26 H 0.132 0.868 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.189 0.811 30 H 0.097 0.903 31 H 0.138 0.862 32 H 0.368 0.632 33 H 0.267 0.733 34 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.538 -14.315 6.807 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.385 3.615 4 O -0.425 6.425 5 C -0.264 4.264 6 C 0.098 3.902 7 C -0.201 4.201 8 C -0.013 4.013 9 N -0.141 5.141 10 C 0.338 3.662 11 O -0.422 6.422 12 N -0.167 5.167 13 C -0.049 4.049 14 C 0.127 3.873 15 H 0.090 0.910 16 O -0.390 6.390 17 C -0.600 4.600 18 H 0.071 0.929 19 C -0.164 4.164 20 N -0.572 5.572 21 Si 0.753 3.247 22 H -0.204 1.204 23 H -0.231 1.231 24 H -0.134 1.134 25 C 0.134 3.866 26 H 0.150 0.850 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.207 0.793 30 H 0.115 0.885 31 H 0.156 0.844 32 H 0.216 0.784 33 H 0.076 0.924 34 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -16.318 -15.287 6.340 23.242 hybrid contribution 0.484 0.978 -0.488 1.195 sum -15.834 -14.310 5.852 22.130 Atomic orbital electron populations 1.23593 0.73946 1.05811 1.02838 1.86498 1.25312 1.31192 1.84028 1.20171 0.87529 0.81816 0.71963 1.90890 1.66931 1.36646 1.48075 1.18062 0.90666 0.92398 1.25239 1.22110 0.89293 1.00214 0.78564 1.17289 0.92019 0.86195 1.24639 1.24818 0.92512 0.91920 0.92027 1.81207 1.08021 1.12730 1.12124 1.18161 0.86577 0.84323 0.77183 1.90908 1.14437 1.86301 1.50532 1.45335 1.06501 1.10306 1.54597 1.23113 1.01831 0.78901 1.01047 1.20079 0.91876 0.86866 0.88476 0.91041 1.86611 1.28771 1.65657 1.57921 1.21593 1.42822 1.01688 0.93916 0.92906 1.25691 0.93045 0.94481 1.03165 1.70046 1.43046 1.15677 1.28395 0.86134 0.77292 0.83067 0.78184 1.20358 1.23122 1.13446 1.22932 0.83042 1.01124 0.79513 0.85033 0.91523 0.91857 0.79340 0.88468 0.84425 0.78398 0.92390 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.57 113.37 1.20 1.46 16 2 O -0.35 -4.71 9.83 -56.65 -0.56 -5.26 16 3 C 0.54 9.06 7.88 70.23 0.55 9.61 16 4 O -0.53 -11.56 16.06 19.79 0.32 -11.25 16 5 C -0.26 -4.18 5.86 -20.21 -0.12 -4.30 16 6 C 0.12 1.94 9.43 23.10 0.22 2.15 16 7 C -0.19 -4.65 5.93 -19.72 -0.12 -4.77 16 8 C 0.30 8.68 15.06 88.33 1.33 10.01 16 9 N -0.46 -15.27 18.54 19.00 0.35 -14.92 16 10 C 0.54 15.99 7.08 86.42 0.61 16.60 16 11 O -0.54 -20.55 14.91 4.59 0.07 -20.49 16 12 N -0.47 -11.58 2.50 -643.41 -1.61 -13.19 16 13 C 0.07 2.06 4.99 86.38 0.43 2.49 16 14 C 0.19 7.19 2.58 29.85 0.08 7.26 16 15 H 0.07 2.66 7.57 -2.39 -0.02 2.65 16 16 O -0.58 -24.38 8.93 -139.64 -1.25 -25.62 16 17 C -0.56 -27.92 9.34 25.60 0.24 -27.68 16 18 H 0.05 2.84 7.99 -2.91 -0.02 2.81 16 19 C 0.04 2.00 5.47 84.65 0.46 2.46 16 20 N -0.93 -54.83 13.96 21.45 0.30 -54.53 16 21 Si 0.93 42.64 26.99 68.60 1.85 44.49 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 24 H -0.21 -9.49 5.30 99.48 0.53 -8.96 16 25 C 0.27 4.91 9.79 84.30 0.83 5.73 16 26 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.19 1.79 7.65 -2.91 -0.02 1.77 16 30 H 0.10 3.14 7.37 -2.39 -0.02 3.12 16 31 H 0.14 3.11 7.97 -2.39 -0.02 3.09 16 32 H 0.37 15.39 8.39 -74.06 -0.62 14.76 16 33 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.21 2.82 7.47 -2.91 -0.02 2.80 16 Total: -1.00 -72.96 312.32 5.56 -67.40 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.37 Total: 12.32 kcal Atomic # 6 Polarization: 15.33 SS G_CDS: 5.71 Total: 21.05 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -0.96 Total: -82.64 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -1.42 Total: -62.62 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.85 Total: 44.49 kcal Total: -72.96 5.56 -67.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656201852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.161 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds