Wall clock time and date at job start Tue Mar 31 2020 03:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48496 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47315 * 300.00698 * 3 2 1 6 6 H 1.48511 * 109.46811 * 60.00304 * 3 2 1 7 7 C 1.38950 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00097 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99714 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00211 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00177 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47496 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99986 * 180.02562 * 13 12 10 15 15 O 1.21516 * 120.00372 * 359.97438 * 14 13 12 16 16 C 1.48096 * 119.99920 * 180.02562 * 14 13 12 17 17 C 1.39531 * 120.02267 * 179.97438 * 16 14 13 18 18 C 1.37883 * 119.97655 * 180.02562 * 17 16 14 19 19 C 1.39337 * 120.01990 * 359.97438 * 18 17 16 20 Xx 1.57007 * 119.97394 * 179.97438 * 19 18 17 21 20 O 1.41999 * 120.00120 * 0.02562 * 20 19 18 22 21 O 1.42000 * 119.99657 * 180.02562 * 20 19 18 23 22 C 1.39336 * 120.04931 * 0.28432 * 19 18 17 24 23 C 1.37881 * 120.02246 * 359.43805 * 23 19 18 25 24 H 0.96993 * 120.00441 * 359.97438 * 1 2 3 26 25 H 0.96998 * 120.00129 * 0.02562 * 9 7 2 27 26 H 1.08997 * 109.47192 * 59.99897 * 12 10 9 28 27 H 1.09001 * 109.47000 * 300.00359 * 12 10 9 29 28 H 0.96997 * 120.00110 * 359.97438 * 13 12 10 30 29 H 1.08000 * 120.01348 * 0.02562 * 17 16 14 31 30 H 1.07994 * 119.99208 * 179.97438 * 18 17 16 32 31 H 0.96692 * 114.00189 * 180.02562 * 21 20 19 33 32 H 0.96708 * 113.99780 * 179.97438 * 22 20 19 34 33 H 1.08003 * 119.99118 * 179.70210 * 23 19 18 35 34 H 1.07996 * 120.01175 * 180.25831 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 6 1.7467 -7.2471 -0.0038 15 8 0.5520 -7.4692 -0.0039 16 6 2.7091 -8.3727 -0.0037 17 6 2.2445 -9.6884 -0.0043 18 6 3.1414 -10.7357 -0.0037 19 6 4.5112 -10.4805 -0.0030 20 8 5.0582 -13.0126 -0.0018 21 8 6.9276 -11.4142 -0.0005 22 6 4.9761 -9.1670 0.0030 23 6 4.0810 -8.1183 -0.0034 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6170 -4.9201 -0.8919 27 1 0.6176 -4.9213 0.8880 28 1 3.1496 -5.7992 -0.0030 29 1 1.1828 -9.8865 -0.0052 30 1 2.7821 -11.7541 -0.0037 31 1 5.7599 -13.6778 -0.0005 32 1 7.4758 -12.2109 0.0006 33 1 6.0381 -8.9702 0.0084 34 1 4.4416 -7.1003 -0.0029 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157075621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:46 Heat of formation + Delta-G solvation = 49.793818 kcal Electronic energy + Delta-G solvation = -20096.562618 eV Core-core repulsion = 16503.044181 eV Total energy + Delta-G solvation = -3593.518437 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.102 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.07471 -39.88976 -37.82356 -37.14281 -34.78857 -34.30278 -30.96981 -30.52503 -29.09058 -28.79745 -28.33671 -26.93374 -23.02717 -22.11642 -21.57615 -20.84704 -20.38801 -18.61288 -17.76371 -16.90843 -16.49410 -16.46553 -15.79335 -15.03170 -14.99943 -14.50435 -14.15089 -13.90335 -13.82138 -13.51329 -13.42850 -13.24080 -12.98505 -12.83710 -12.14804 -11.86451 -11.80977 -11.49748 -10.93289 -10.87961 -10.70033 -10.69679 -10.12019 -9.51580 -9.47197 -8.73935 -8.49369 -6.96458 -6.89409 -6.57948 -5.60833 -3.83334 0.15449 1.15597 1.35654 1.49751 1.65594 1.89402 1.93076 2.18359 2.43067 2.52960 2.99291 3.06001 3.87549 4.19728 4.30585 4.69208 4.81974 4.88661 4.93644 5.07252 5.25179 5.43212 5.63522 5.66072 5.90159 5.98407 6.09911 6.28748 6.44893 6.52784 6.58074 7.04636 7.22085 7.28915 7.30227 7.46097 8.05281 10.18742 10.32289 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.002706 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.388409 B =10344.487940 C =11129.730979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.659 5.659 2 C -0.065 4.065 3 Si 0.974 3.026 4 H -0.239 1.239 5 H -0.249 1.249 6 H -0.249 1.249 7 C 0.058 3.942 8 H 0.172 0.828 9 N -0.570 5.570 10 C 0.475 3.525 11 O -0.496 6.496 12 C 0.106 3.894 13 N -0.723 5.723 14 C 0.578 3.422 15 O -0.540 6.540 16 C -0.179 4.179 17 C -0.041 4.041 18 C -0.136 4.136 19 C 0.257 3.743 20 O -0.891 6.891 21 O -0.893 6.893 22 C -0.134 4.134 23 C -0.069 4.069 24 H 0.336 0.664 25 H 0.427 0.573 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.413 0.587 29 H 0.146 0.854 30 H 0.152 0.848 31 H 0.269 0.731 32 H 0.269 0.731 33 H 0.152 0.848 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 32.316 0.003 35.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.303 5.303 2 C -0.282 4.282 3 Si 0.791 3.209 4 H -0.161 1.161 5 H -0.173 1.173 6 H -0.172 1.172 7 C -0.071 4.071 8 H 0.189 0.811 9 N -0.208 5.208 10 C 0.265 3.735 11 O -0.373 6.373 12 C -0.021 4.021 13 N -0.380 5.380 14 C 0.367 3.633 15 O -0.418 6.418 16 C -0.182 4.182 17 C -0.060 4.060 18 C -0.154 4.154 19 C 0.235 3.765 20 O -0.709 6.709 21 O -0.711 6.711 22 C -0.152 4.152 23 C -0.088 4.088 24 H 0.150 0.850 25 H 0.265 0.735 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.253 0.747 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.906 33.143 0.002 36.341 hybrid contribution 1.137 -0.571 0.001 1.272 sum -13.769 32.573 0.003 35.364 Atomic orbital electron populations 1.69558 1.07688 1.36393 1.16703 1.26991 0.97334 1.04108 0.99764 0.84948 0.80270 0.74326 0.81370 1.16110 1.17250 1.17244 1.23255 0.98431 0.83093 1.02283 0.81053 1.43446 1.13017 1.05484 1.58843 1.21034 0.88592 0.85710 0.78180 1.90763 1.13552 1.86988 1.45987 1.20974 0.92390 0.83074 1.05677 1.45601 1.10948 1.04381 1.77051 1.18224 0.88079 0.81951 0.75027 1.90746 1.16234 1.84736 1.50053 1.19650 0.93020 0.93435 1.12064 1.21123 0.99658 0.89427 0.95783 1.21409 0.90465 1.01247 1.02261 1.30803 0.81582 0.78535 0.85591 1.93498 1.41357 1.36073 1.99960 1.93496 1.43630 1.33988 1.99960 1.21331 1.02612 0.89118 1.02170 1.21156 0.91100 0.98040 0.98509 0.85032 0.73455 0.87493 0.87495 0.74726 0.83655 0.82999 0.90162 0.90183 0.83084 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -4.03 13.05 55.50 0.72 -3.31 16 2 C -0.07 -0.35 5.50 -17.47 -0.10 -0.45 16 3 Si 0.97 4.00 29.55 -169.99 -5.02 -1.03 16 4 H -0.24 -1.09 7.11 56.52 0.40 -0.68 16 5 H -0.25 -1.22 7.11 56.52 0.40 -0.82 16 6 H -0.25 -1.22 7.11 56.52 0.40 -0.82 16 7 C 0.06 0.35 9.68 -14.93 -0.14 0.20 16 8 H 0.17 0.92 7.16 -52.49 -0.38 0.54 16 9 N -0.57 -3.36 5.29 -10.96 -0.06 -3.42 16 10 C 0.47 3.66 7.85 -10.99 -0.09 3.58 16 11 O -0.50 -5.30 15.24 5.54 0.08 -5.21 16 12 C 0.11 0.82 6.15 -5.20 -0.03 0.79 16 13 N -0.72 -7.90 5.48 -62.36 -0.34 -8.24 16 14 C 0.58 8.26 7.78 -12.21 -0.10 8.16 16 15 O -0.54 -8.81 16.34 5.35 0.09 -8.73 16 16 C -0.18 -2.90 5.88 -104.89 -0.62 -3.52 16 17 C -0.04 -0.72 9.58 -39.23 -0.38 -1.10 16 18 C -0.14 -3.02 9.74 -39.30 -0.38 -3.40 16 19 C 0.26 6.85 9.79 -38.76 -0.38 6.47 16 20 O -0.89 -33.93 17.23 -57.73 -0.99 -34.93 16 21 O -0.89 -33.88 17.23 -57.73 -0.99 -34.88 16 22 C -0.13 -2.90 9.74 -39.30 -0.38 -3.28 16 23 C -0.07 -1.12 9.53 -39.23 -0.37 -1.49 16 24 H 0.34 1.58 8.31 -40.82 -0.34 1.24 16 25 H 0.43 1.91 7.90 -40.82 -0.32 1.59 16 26 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.41 4.34 5.46 -40.82 -0.22 4.12 16 29 H 0.15 2.26 7.64 -52.49 -0.40 1.86 16 30 H 0.15 3.52 7.75 -52.49 -0.41 3.11 16 31 H 0.27 9.84 8.90 45.56 0.41 10.25 16 32 H 0.27 9.82 8.90 45.56 0.41 10.22 16 33 H 0.15 3.40 7.75 -52.48 -0.41 2.99 16 34 H 0.13 1.64 6.39 -52.49 -0.34 1.30 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -47.19 324.40 -6.23 -53.42 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -1.64 Total: 35.48 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.96 Total: 5.96 kcal Atomic # 7 Polarization: -15.30 SS G_CDS: 0.32 Total: -14.98 kcal Atomic # 8 Polarization: -81.93 SS G_CDS: -1.82 Total: -83.75 kcal Atomic # 14 Polarization: 4.00 SS G_CDS: -5.02 Total: -1.03 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -47.19 -6.23 -53.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157075621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.216 kcal (2) G-P(sol) polarization free energy of solvation -47.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds