Wall clock time and date at job start Tue Mar 31 2020 03:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48496 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47315 * 300.00698 * 3 2 1 6 6 H 1.48511 * 109.46811 * 60.00304 * 3 2 1 7 7 C 1.38950 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00097 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99714 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00211 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00177 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47496 * 180.02562 * 12 10 9 14 14 C 1.34777 * 119.99986 * 180.02562 * 13 12 10 15 15 O 1.21516 * 120.00372 * 359.97438 * 14 13 12 16 16 C 1.48096 * 119.99920 * 180.02562 * 14 13 12 17 17 C 1.39531 * 120.02267 * 179.97438 * 16 14 13 18 18 C 1.37883 * 119.97655 * 180.02562 * 17 16 14 19 19 C 1.39337 * 120.01990 * 359.97438 * 18 17 16 20 Xx 1.57007 * 119.97394 * 179.97438 * 19 18 17 21 20 O 1.41999 * 120.00120 * 0.02562 * 20 19 18 22 21 O 1.42000 * 119.99657 * 180.02562 * 20 19 18 23 22 C 1.39336 * 120.04931 * 0.28432 * 19 18 17 24 23 C 1.37881 * 120.02246 * 359.43805 * 23 19 18 25 24 H 0.96993 * 120.00441 * 359.97438 * 1 2 3 26 25 H 0.96998 * 120.00129 * 0.02562 * 9 7 2 27 26 H 1.08997 * 109.47192 * 59.99897 * 12 10 9 28 27 H 1.09001 * 109.47000 * 300.00359 * 12 10 9 29 28 H 0.96997 * 120.00110 * 359.97438 * 13 12 10 30 29 H 1.08000 * 120.01348 * 0.02562 * 17 16 14 31 30 H 1.07994 * 119.99208 * 179.97438 * 18 17 16 32 31 H 0.96692 * 114.00189 * 180.02562 * 21 20 19 33 32 H 0.96708 * 113.99780 * 179.97438 * 22 20 19 34 33 H 1.08003 * 119.99118 * 179.70210 * 23 19 18 35 34 H 1.07996 * 120.01175 * 180.25831 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 7 2.1959 -5.9764 -0.0027 14 6 1.7467 -7.2471 -0.0038 15 8 0.5520 -7.4692 -0.0039 16 6 2.7091 -8.3727 -0.0037 17 6 2.2445 -9.6884 -0.0043 18 6 3.1414 -10.7357 -0.0037 19 6 4.5112 -10.4805 -0.0030 20 8 5.0582 -13.0126 -0.0018 21 8 6.9276 -11.4142 -0.0005 22 6 4.9761 -9.1670 0.0030 23 6 4.0810 -8.1183 -0.0034 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6170 -4.9201 -0.8919 27 1 0.6176 -4.9213 0.8880 28 1 3.1496 -5.7992 -0.0030 29 1 1.1828 -9.8865 -0.0052 30 1 2.7821 -11.7541 -0.0037 31 1 5.7599 -13.6778 -0.0005 32 1 7.4758 -12.2109 0.0006 33 1 6.0381 -8.9702 0.0084 34 1 4.4416 -7.1003 -0.0029 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157075621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:45 Heat of formation + Delta-G solvation = -0.240710 kcal Electronic energy + Delta-G solvation = -20098.732278 eV Core-core repulsion = 16503.044181 eV Total energy + Delta-G solvation = -3595.688097 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.86996 -41.17176 -39.58435 -37.69197 -35.78345 -34.78428 -32.76413 -32.45306 -31.13580 -30.62438 -29.93222 -27.63753 -24.60853 -23.93858 -22.34148 -21.71173 -21.33184 -19.80298 -18.35194 -17.67325 -17.43351 -17.15229 -16.57876 -16.23265 -16.05593 -16.01175 -15.93461 -15.05869 -14.87786 -14.43296 -14.33520 -14.27553 -13.90641 -13.90197 -13.84347 -13.46973 -13.39867 -12.63113 -12.24501 -12.20890 -11.47616 -11.43380 -11.14597 -10.72746 -10.64006 -10.30846 -9.93858 -9.27177 -9.27112 -9.19960 -8.42654 -4.28557 -2.06944 -0.83254 -0.26948 0.89957 1.11609 1.39323 1.53415 1.53475 1.62494 1.96589 2.13556 2.26351 2.32966 3.07809 3.26565 3.31833 3.41949 3.59173 3.63838 3.91663 4.25184 4.30898 4.37123 4.46335 4.51407 4.57074 4.66956 5.00108 5.03157 5.06179 5.13804 5.48256 6.08124 6.23550 6.74436 6.90848 7.06308 7.61221 7.72534 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.002706 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.388409 B =10344.487940 C =11129.730979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.671 5.671 2 C -0.066 4.066 3 Si 1.018 2.982 4 H -0.244 1.244 5 H -0.261 1.261 6 H -0.261 1.261 7 C 0.052 3.948 8 H 0.177 0.823 9 N -0.562 5.562 10 C 0.480 3.520 11 O -0.529 6.529 12 C 0.103 3.897 13 N -0.706 5.706 14 C 0.588 3.412 15 O -0.544 6.544 16 C -0.131 4.131 17 C 0.004 3.996 18 C -0.128 4.128 19 C 0.322 3.678 20 O -1.080 7.080 21 O -1.077 7.077 22 C -0.125 4.125 23 C -0.011 4.011 24 H 0.342 0.658 25 H 0.434 0.566 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.419 0.581 29 H 0.202 0.798 30 H 0.153 0.847 31 H 0.237 0.763 32 H 0.238 0.762 33 H 0.158 0.842 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.212 40.730 -0.001 45.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.282 4.282 3 Si 0.835 3.165 4 H -0.166 1.166 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.077 4.077 8 H 0.195 0.805 9 N -0.200 5.200 10 C 0.271 3.729 11 O -0.408 6.408 12 C -0.023 4.023 13 N -0.362 5.362 14 C 0.375 3.625 15 O -0.422 6.422 16 C -0.134 4.134 17 C -0.014 4.014 18 C -0.146 4.146 19 C 0.311 3.689 20 O -0.901 6.901 21 O -0.898 6.898 22 C -0.143 4.143 23 C -0.028 4.028 24 H 0.157 0.843 25 H 0.274 0.726 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.260 0.740 29 H 0.218 0.782 30 H 0.171 0.829 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.175 0.825 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -21.388 41.711 -0.002 46.875 hybrid contribution 2.145 -1.964 0.003 2.909 sum -19.242 39.746 0.001 44.159 Atomic orbital electron populations 1.69545 1.08142 1.37225 1.16681 1.27199 0.97305 1.04623 0.99104 0.84305 0.79345 0.72801 0.80024 1.16614 1.18498 1.18488 1.23461 0.98871 0.83188 1.02205 0.80549 1.43355 1.13397 1.05103 1.58107 1.20969 0.88067 0.86042 0.77825 1.90765 1.14759 1.87319 1.47968 1.21249 0.91724 0.81532 1.07786 1.45472 1.12020 1.03984 1.74702 1.17430 0.86888 0.82087 0.76129 1.90820 1.16238 1.84805 1.50349 1.20290 0.93716 0.94341 1.05029 1.21410 1.00110 0.87108 0.92755 1.21625 0.87053 1.03852 1.02029 1.28784 0.73113 0.64824 1.02144 1.93375 1.47122 1.49637 1.99968 1.93364 1.60439 1.36021 1.99968 1.21643 1.04865 0.86083 1.01691 1.21622 0.89175 0.97947 0.94100 0.84304 0.72574 0.85374 0.85379 0.74040 0.78161 0.82934 0.93566 0.93544 0.82508 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -5.63 13.05 21.66 0.28 -5.34 16 2 C -0.07 -0.45 5.50 84.93 0.47 0.01 16 3 Si 1.02 5.23 29.55 68.60 2.03 7.26 16 4 H -0.24 -1.44 7.11 99.48 0.71 -0.73 16 5 H -0.26 -1.85 7.11 99.48 0.71 -1.14 16 6 H -0.26 -1.85 7.11 99.48 0.71 -1.14 16 7 C 0.05 0.37 9.68 84.04 0.81 1.19 16 8 H 0.18 1.11 7.16 -2.91 -0.02 1.09 16 9 N -0.56 -3.39 5.29 -306.98 -1.62 -5.01 16 10 C 0.48 4.00 7.85 87.66 0.69 4.69 16 11 O -0.53 -7.72 15.24 -3.08 -0.05 -7.76 16 12 C 0.10 0.66 6.15 85.63 0.53 1.18 16 13 N -0.71 -7.82 5.48 -469.48 -2.57 -10.40 16 14 C 0.59 9.92 7.78 86.86 0.68 10.60 16 15 O -0.54 -11.59 16.34 -3.77 -0.06 -11.65 16 16 C -0.13 -2.74 5.88 -20.04 -0.12 -2.86 16 17 C 0.00 0.11 9.58 22.50 0.22 0.32 16 18 C -0.13 -5.13 9.74 22.45 0.22 -4.91 16 19 C 0.32 16.96 9.79 22.80 0.22 17.18 16 20 O -1.08 -97.11 17.23 -127.47 -2.20 -99.30 16 21 O -1.08 -96.11 17.23 -127.47 -2.20 -98.30 16 22 C -0.13 -4.77 9.74 22.45 0.22 -4.56 16 23 C -0.01 -0.23 9.53 22.50 0.21 -0.02 16 24 H 0.34 2.08 8.31 -92.71 -0.77 1.31 16 25 H 0.43 1.36 7.90 -92.71 -0.73 0.63 16 26 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.42 4.07 5.46 -92.71 -0.51 3.56 16 29 H 0.20 3.81 7.64 -2.91 -0.02 3.78 16 30 H 0.15 6.86 7.75 -2.91 -0.02 6.83 16 31 H 0.24 21.68 8.90 -74.06 -0.66 21.02 16 32 H 0.24 21.59 8.90 -74.05 -0.66 20.93 16 33 H 0.16 6.64 7.75 -2.91 -0.02 6.62 16 34 H 0.21 2.30 6.39 -2.91 -0.02 2.28 16 Total: -1.00 -138.14 324.40 -3.59 -141.74 By element: Atomic # 1 Polarization: 67.29 SS G_CDS: -1.35 Total: 65.93 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: 4.14 Total: 22.85 kcal Atomic # 7 Polarization: -16.84 SS G_CDS: -3.91 Total: -20.75 kcal Atomic # 8 Polarization: -212.52 SS G_CDS: -4.50 Total: -217.02 kcal Atomic # 14 Polarization: 5.23 SS G_CDS: 2.03 Total: 7.26 kcal Total: -138.14 -3.59 -141.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157075621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.495 kcal (2) G-P(sol) polarization free energy of solvation -138.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -141.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds