Wall clock time and date at job start Tue Mar 31 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47356 * 2 1 4 4 N 1.46504 * 109.47148 * 239.99809 * 2 1 3 5 5 C 1.34769 * 119.99737 * 85.00390 * 4 2 1 6 6 O 1.21614 * 120.00600 * 359.71702 * 5 4 2 7 7 C 1.47388 * 119.99872 * 179.72582 * 5 4 2 8 8 C 1.47023 * 127.18877 * 179.97438 * 7 5 4 9 9 C 1.34181 * 105.94813 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12640 * 0.02562 * 9 8 7 11 11 C 1.33648 * 110.91019 * 359.76115 * 10 9 8 12 12 C 1.50703 * 109.47028 * 119.99835 * 2 1 3 13 13 O 1.21301 * 119.99769 * 120.00474 * 12 2 1 14 14 N 1.34770 * 120.00296 * 300.00016 * 12 2 1 15 15 C 1.37096 * 120.00344 * 180.02562 * 14 12 2 16 16 H 1.08000 * 119.99787 * 222.94313 * 15 14 12 17 17 C 1.38944 * 120.00064 * 42.93761 * 15 14 12 18 18 N 1.31409 * 120.00092 * 18.93725 * 17 15 14 19 19 Si 1.86806 * 119.99856 * 198.93062 * 17 15 14 20 20 H 1.48497 * 109.47096 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46882 * 120.00329 * 19 17 15 22 22 H 1.48500 * 109.47178 * 239.99926 * 19 17 15 23 23 C 1.46500 * 119.99563 * 359.97438 * 14 12 2 24 24 C 1.53000 * 117.49796 * 187.62631 * 23 14 12 25 25 C 1.53008 * 117.49412 * 118.97133 * 23 14 12 26 26 H 1.08995 * 109.47466 * 300.00164 * 1 2 3 27 27 H 1.09002 * 109.47277 * 60.00362 * 1 2 3 28 28 H 1.09013 * 109.47115 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99910 * 264.72267 * 4 2 1 30 30 H 1.07999 * 127.02703 * 359.97438 * 8 7 5 31 31 H 1.08000 * 125.43656 * 179.97438 * 9 8 7 32 32 H 1.07994 * 125.80843 * 180.27068 * 11 10 9 33 33 H 0.97005 * 119.99848 * 174.92402 * 18 17 15 34 34 H 1.09001 * 115.55400 * 333.29939 * 23 14 12 35 35 H 1.09004 * 117.50252 * 0.02562 * 24 23 14 36 36 H 1.09010 * 117.49954 * 145.02478 * 24 23 14 37 37 H 1.08997 * 117.49657 * 214.97946 * 25 23 14 38 38 H 1.08999 * 117.50245 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8530 1.1604 -2.4130 7 6 2.6441 -0.7116 -3.5590 8 6 2.8445 -0.1370 -4.8973 9 6 3.3080 -1.1372 -5.6624 10 8 3.4048 -2.2507 -4.9193 11 6 3.0188 -2.0194 -3.6608 12 6 2.0323 -0.7104 1.2305 13 8 2.7297 -1.6966 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1641 -0.8959 3.5740 16 1 1.5012 -1.0620 4.4103 17 6 3.4804 -1.3369 3.6325 18 7 4.3790 -0.8332 2.8167 19 14 3.9727 -2.6458 4.8712 20 1 2.7845 -3.0462 5.6668 21 1 4.5092 -3.8298 4.1532 22 1 5.0157 -2.1021 5.7777 23 6 0.8649 0.9415 2.5889 24 6 0.6771 1.5191 3.9932 25 6 -0.4761 0.7815 3.3081 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0278 0.0005 29 1 2.2528 -1.6309 -1.1516 30 1 2.6569 0.8819 -5.2024 31 1 3.5618 -1.0589 -6.7092 32 1 3.0045 -2.7447 -2.8609 33 1 5.3112 -1.0862 2.9060 34 1 0.9093 1.6447 1.7573 35 1 1.1801 1.0128 4.8171 36 1 0.5975 2.6023 4.0854 37 1 -1.3138 1.3798 2.9498 38 1 -0.7322 -0.2102 3.6809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049425900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:12 Heat of formation + Delta-G solvation = -30.832735 kcal Electronic energy + Delta-G solvation = -23597.167984 eV Core-core repulsion = 20021.416010 eV Total energy + Delta-G solvation = -3575.751974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.48255 -41.19237 -39.99221 -37.87961 -36.04631 -34.66589 -33.98136 -33.03831 -31.81028 -30.31896 -27.16649 -25.75641 -24.12133 -23.13932 -22.61687 -22.38093 -21.37231 -21.01834 -19.68937 -18.17352 -17.86150 -17.40690 -17.10698 -16.84963 -16.56121 -16.03268 -15.91078 -15.46006 -15.40908 -15.15781 -14.51601 -14.47984 -13.92742 -13.84478 -13.65370 -13.33013 -13.20096 -12.87654 -12.75570 -12.69559 -12.46848 -12.21862 -12.03911 -11.61205 -11.23611 -11.18938 -10.87049 -10.77239 -10.29168 -9.93449 -9.74600 -9.00422 -8.21863 -6.00025 0.32457 1.13662 1.37488 1.44411 1.52802 1.92312 2.09823 2.18032 2.31190 2.37991 3.02926 3.11261 3.32919 3.62030 3.76341 3.85260 4.05346 4.13926 4.19714 4.24977 4.26208 4.43691 4.54250 4.73646 4.76587 4.84528 4.91471 4.98816 5.02159 5.20781 5.27002 5.33800 5.36407 5.48325 5.50062 5.97433 6.17197 6.48832 6.97667 7.08452 7.15725 7.63613 8.24816 8.86509 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.017881 B = 0.004800 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.533467 B = 5832.010779 C = 7020.384245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.139 3.861 3 H 0.080 0.920 4 N -0.697 5.697 5 C 0.585 3.415 6 O -0.582 6.582 7 C -0.267 4.267 8 C -0.193 4.193 9 C -0.020 4.020 10 O -0.175 6.175 11 C 0.038 3.962 12 C 0.466 3.534 13 O -0.575 6.575 14 N -0.431 5.431 15 C -0.355 4.355 16 H 0.085 0.915 17 C 0.023 3.977 18 N -0.871 5.871 19 Si 0.972 3.028 20 H -0.256 1.256 21 H -0.293 1.293 22 H -0.277 1.277 23 C 0.037 3.963 24 C -0.173 4.173 25 C -0.173 4.173 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.408 0.592 30 H 0.160 0.840 31 H 0.255 0.745 32 H 0.232 0.768 33 H 0.259 0.741 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 0.148 -11.112 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.030 3.970 3 H 0.098 0.902 4 N -0.349 5.349 5 C 0.374 3.626 6 O -0.464 6.464 7 C -0.271 4.271 8 C -0.213 4.213 9 C -0.085 4.085 10 O -0.069 6.069 11 C -0.032 4.032 12 C 0.254 3.746 13 O -0.456 6.456 14 N -0.150 5.150 15 C -0.482 4.482 16 H 0.102 0.898 17 C -0.183 4.183 18 N -0.506 5.506 19 Si 0.797 3.203 20 H -0.180 1.180 21 H -0.220 1.220 22 H -0.203 1.203 23 C -0.068 4.068 24 C -0.210 4.210 25 C -0.211 4.211 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.178 0.822 31 H 0.270 0.730 32 H 0.248 0.752 33 H 0.069 0.931 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.065 0.151 -11.373 12.890 hybrid contribution 0.821 -0.565 0.900 1.343 sum -5.244 -0.414 -10.473 11.720 Atomic orbital electron populations 1.22210 0.91391 1.03147 1.04058 1.20597 0.96566 0.96125 0.83663 0.90181 1.45603 1.66252 1.14758 1.08253 1.17664 0.76617 0.85764 0.82535 1.90704 1.53016 1.16955 1.85732 1.21542 1.13877 0.96009 0.95689 1.22954 1.05678 1.01907 0.90737 1.24722 1.02981 0.81945 0.98896 1.83836 1.66165 1.37345 1.19590 1.24870 0.96079 0.96411 0.85886 1.20320 0.83664 0.85803 0.84786 1.90462 1.39953 1.29310 1.85900 1.42835 1.45128 1.22826 1.04216 1.19191 0.94770 1.37488 0.96755 0.89782 1.26051 0.95764 0.98512 0.98014 1.69973 1.01431 1.41159 1.38004 0.85222 0.78548 0.78608 0.77884 1.17988 1.22004 1.20284 1.22075 0.95944 0.91299 0.97496 1.23195 1.02071 1.00332 0.95442 1.23367 0.91971 1.01911 1.03882 0.88662 0.91460 0.92063 0.75445 0.82198 0.72952 0.75184 0.93136 0.86276 0.89744 0.86712 0.85657 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.11 71.98 0.66 -4.25 16 2 C 0.14 5.66 2.19 44.24 0.10 5.76 16 3 H 0.08 3.50 7.00 -2.39 -0.02 3.49 16 4 N -0.70 -26.26 4.95 -449.41 -2.22 -28.49 16 5 C 0.58 21.76 7.78 86.65 0.67 22.43 16 6 O -0.58 -25.01 16.65 -4.07 -0.07 -25.08 16 7 C -0.27 -7.96 6.31 -18.99 -0.12 -8.08 16 8 C -0.19 -4.72 11.01 23.65 0.26 -4.46 16 9 C -0.02 -0.35 12.03 66.89 0.80 0.45 16 10 O -0.17 -3.65 10.52 4.49 0.05 -3.60 16 11 C 0.04 0.91 11.61 67.39 0.78 1.69 16 12 C 0.47 23.16 6.44 87.66 0.56 23.72 16 13 O -0.57 -32.60 13.49 -3.10 -0.04 -32.64 16 14 N -0.43 -20.89 2.85 -613.12 -1.75 -22.64 16 15 C -0.35 -18.85 7.83 84.04 0.66 -18.19 16 16 H 0.08 4.29 7.40 -2.91 -0.02 4.27 16 17 C 0.02 1.28 4.36 84.93 0.37 1.65 16 18 N -0.87 -52.10 11.67 21.66 0.25 -51.85 16 19 Si 0.97 44.45 29.60 68.60 2.03 46.48 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 C 0.04 1.39 4.30 44.99 0.19 1.58 16 24 C -0.17 -5.75 9.81 30.62 0.30 -5.45 16 25 C -0.17 -5.17 9.39 30.62 0.29 -4.88 16 26 H 0.09 2.87 4.37 -2.39 -0.01 2.86 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.41 14.63 6.75 -92.70 -0.63 14.00 16 30 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 31 H 0.25 1.70 8.06 -2.91 -0.02 1.67 16 32 H 0.23 4.37 7.47 -2.91 -0.02 4.35 16 33 H 0.26 14.99 8.32 -92.70 -0.77 14.22 16 34 H 0.12 4.17 6.24 -2.39 -0.01 4.16 16 35 H 0.08 3.23 6.83 -2.39 -0.02 3.21 16 36 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 37 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -76.54 324.44 4.26 -72.28 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.48 Total: 33.55 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.53 Total: 11.97 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.72 Total: -102.97 kcal Atomic # 8 Polarization: -61.26 SS G_CDS: -0.06 Total: -61.32 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -76.54 4.26 -72.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.450 kcal (2) G-P(sol) polarization free energy of solvation -76.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds