Wall clock time and date at job start Tue Mar 31 2020 03:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34232 * 116.99459 * 2 1 4 4 O 1.20818 * 120.00282 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99465 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.46929 * 179.97438 * 5 3 2 7 7 C 1.37090 * 119.99970 * 269.99646 * 6 5 3 8 8 H 1.07994 * 120.00177 * 202.99171 * 7 6 5 9 9 C 1.38957 * 120.00053 * 22.99593 * 7 6 5 10 10 N 1.31408 * 119.99834 * 351.26117 * 9 7 6 11 11 Si 1.86803 * 119.99952 * 171.25348 * 9 7 6 12 12 H 1.48495 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46462 * 120.00262 * 11 9 7 14 14 H 1.48499 * 109.46840 * 240.00129 * 11 9 7 15 15 C 1.34777 * 119.99697 * 89.99893 * 6 5 3 16 16 O 1.21285 * 120.00345 * 5.01289 * 15 6 5 17 17 C 1.50705 * 119.99579 * 185.01994 * 15 6 5 18 18 C 1.52998 * 109.47177 * 174.79851 * 17 15 6 19 19 C 1.50695 * 109.47164 * 179.97438 * 18 17 15 20 20 C 1.38679 * 120.41733 * 269.71790 * 19 18 17 21 21 C 1.38628 * 118.41710 * 179.78758 * 20 19 18 22 22 C 1.38223 * 119.16178 * 0.50951 * 21 20 19 23 23 N 1.31854 * 120.76891 * 359.72804 * 22 21 20 24 24 C 1.31889 * 121.71783 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47372 * 60.00080 * 1 2 3 26 26 H 1.09000 * 109.47037 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47195 * 299.99903 * 1 2 3 28 28 H 1.08995 * 109.47311 * 59.99549 * 5 3 2 29 29 H 1.08997 * 109.46999 * 299.99209 * 5 3 2 30 30 H 0.96999 * 119.99988 * 185.00859 * 10 9 7 31 31 H 1.08996 * 109.47501 * 54.79684 * 17 15 6 32 32 H 1.09003 * 109.46920 * 294.79470 * 17 15 6 33 33 H 1.09000 * 109.47474 * 59.99351 * 18 17 15 34 34 H 1.09003 * 109.46884 * 299.99640 * 18 17 15 35 35 H 1.07997 * 120.78757 * 0.02562 * 20 19 18 36 36 H 1.08002 * 120.41428 * 180.22388 * 21 20 19 37 37 H 1.08004 * 119.61341 * 179.75114 * 22 21 20 38 38 H 1.08004 * 119.61026 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9816 2.6799 -0.0011 7 6 4.1756 3.3369 -1.1886 8 1 4.8138 4.2073 -1.2262 9 6 3.5509 2.8830 -2.3438 10 7 2.9158 1.7326 -2.3387 11 14 3.6137 3.9084 -3.9040 12 1 4.3848 5.1515 -3.6487 13 1 4.2741 3.1293 -4.9820 14 1 2.2324 4.2590 -4.3218 15 6 4.1731 3.3264 1.1659 16 8 4.0905 2.7224 2.2145 17 6 4.4896 4.7998 1.1679 18 6 4.5304 5.3107 2.6095 19 6 4.8475 6.7839 2.6115 20 6 6.1628 7.2189 2.6744 21 6 6.4073 8.5835 2.6692 22 6 5.3392 9.4589 2.6128 23 7 4.1008 9.0095 2.5589 24 6 3.8311 7.7185 2.5571 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9557 0.7810 -0.8907 29 1 3.9563 0.7808 0.8892 30 1 2.5423 1.3812 -3.1620 31 1 3.7204 5.3375 0.6136 32 1 5.4587 4.9639 0.6967 33 1 5.2996 4.7731 3.1639 34 1 3.5613 5.1467 3.0807 35 1 6.9773 6.5114 2.7223 36 1 7.4195 8.9578 2.7134 37 1 5.5211 10.5235 2.6124 38 1 2.8039 7.3879 2.5124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120628393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:14 Heat of formation + Delta-G solvation = -97.477724 kcal Electronic energy + Delta-G solvation = -23294.090314 eV Core-core repulsion = 19715.448397 eV Total energy + Delta-G solvation = -3578.641917 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39145 -41.04331 -40.12425 -37.38844 -36.51547 -35.40519 -33.47280 -32.93625 -31.34953 -29.91585 -27.92230 -26.82512 -25.37007 -24.44013 -22.66052 -21.83248 -21.06355 -18.87060 -18.48120 -18.16230 -17.82066 -17.41565 -17.22539 -16.96513 -16.24257 -16.12724 -15.91256 -15.63124 -14.90865 -14.62640 -14.41847 -14.23729 -14.00084 -13.86235 -13.68607 -13.39376 -13.06114 -13.02709 -12.85214 -12.67191 -12.39571 -12.37933 -12.06761 -11.91848 -11.58147 -11.48184 -10.94609 -10.70954 -10.50802 -10.34578 -9.89701 -9.83152 -8.34592 -6.02418 0.20966 0.38887 1.36765 1.45450 1.56709 1.68365 1.84313 2.20231 2.34106 2.82415 2.99693 3.13151 3.58502 3.87666 3.95002 4.13818 4.15213 4.24033 4.30415 4.35089 4.38649 4.39834 4.43654 4.58744 4.70679 4.73410 4.80339 4.91807 4.99749 5.04119 5.20698 5.27221 5.41274 5.46243 5.64736 5.76024 5.84433 6.32564 7.05407 7.06334 7.22552 7.46601 7.86100 8.66971 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.015968 B = 0.004662 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.066345 B = 6004.975085 C = 6974.967665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.492 3.508 4 O -0.550 6.550 5 C 0.150 3.850 6 N -0.446 5.446 7 C -0.338 4.338 8 H 0.117 0.883 9 C -0.001 4.001 10 N -0.906 5.906 11 Si 0.993 3.007 12 H -0.254 1.254 13 H -0.272 1.272 14 H -0.294 1.294 15 C 0.459 3.541 16 O -0.629 6.629 17 C -0.100 4.100 18 C -0.048 4.048 19 C -0.131 4.131 20 C -0.078 4.078 21 C -0.162 4.162 22 C 0.078 3.922 23 N -0.512 5.512 24 C 0.082 3.918 25 H 0.043 0.957 26 H 0.134 0.866 27 H 0.050 0.950 28 H 0.134 0.866 29 H 0.082 0.918 30 H 0.271 0.729 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.153 0.847 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 6.249 3.962 9.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.292 6.292 3 C 0.336 3.664 4 O -0.439 6.439 5 C 0.025 3.975 6 N -0.165 5.165 7 C -0.465 4.465 8 H 0.134 0.866 9 C -0.202 4.202 10 N -0.546 5.546 11 Si 0.818 3.182 12 H -0.178 1.178 13 H -0.198 1.198 14 H -0.221 1.221 15 C 0.251 3.749 16 O -0.517 6.517 17 C -0.140 4.140 18 C -0.087 4.087 19 C -0.133 4.133 20 C -0.104 4.104 21 C -0.182 4.182 22 C -0.079 4.079 23 N -0.221 5.221 24 C -0.074 4.074 25 H 0.062 0.938 26 H 0.152 0.848 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.171 0.829 36 H 0.187 0.813 37 H 0.198 0.802 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.240 6.756 4.287 9.055 hybrid contribution -0.109 -0.518 -1.009 1.139 sum 4.131 6.239 3.278 8.169 Atomic orbital electron populations 1.23283 0.76381 1.04823 1.01081 1.86432 1.23928 1.33858 1.84964 1.24079 0.92668 0.80639 0.69033 1.90464 1.67530 1.37721 1.48227 1.20656 0.86871 0.86089 1.03885 1.43605 1.58153 1.08694 1.06040 1.20075 1.27964 1.13364 0.85105 0.86593 1.26109 0.93953 0.97094 1.02993 1.69702 1.37012 1.18961 1.28969 0.84848 0.77391 0.78843 0.77155 1.17751 1.19751 1.22070 1.21024 0.80681 0.90635 0.82604 1.90500 1.59070 1.69821 1.32273 1.21285 1.03701 0.90974 0.98007 1.20126 1.02904 0.90161 0.95475 1.20896 0.95133 0.96302 1.00995 1.21861 0.96178 0.97124 0.95230 1.22493 1.02154 0.93241 1.00268 1.23305 0.87405 1.01969 0.95208 1.67687 1.24738 1.16727 1.12920 1.22758 0.99982 0.88316 0.96324 0.93788 0.84834 0.93091 0.84867 0.90063 0.91812 0.90159 0.88417 0.90137 0.91866 0.82936 0.81332 0.80192 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.30 10.56 113.37 1.20 2.49 16 2 O -0.38 -16.33 10.57 -51.43 -0.54 -16.87 16 3 C 0.49 24.85 5.92 71.24 0.42 25.27 16 4 O -0.55 -31.00 15.94 21.99 0.35 -30.65 16 5 C 0.15 7.38 5.29 85.63 0.45 7.83 16 6 N -0.45 -22.25 2.11 -639.60 -1.35 -23.60 16 7 C -0.34 -16.51 9.00 84.04 0.76 -15.75 16 8 H 0.12 5.18 6.72 -2.91 -0.02 5.16 16 9 C 0.00 -0.06 5.41 84.93 0.46 0.40 16 10 N -0.91 -46.27 8.21 21.66 0.18 -46.10 16 11 Si 0.99 39.55 29.57 68.60 2.03 41.58 16 12 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 13 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 14 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 15 C 0.46 21.75 7.62 87.66 0.67 22.41 16 16 O -0.63 -32.25 15.54 -3.05 -0.05 -32.30 16 17 C -0.10 -3.75 4.23 29.85 0.13 -3.63 16 18 C -0.05 -1.56 4.68 29.85 0.14 -1.42 16 19 C -0.13 -3.64 5.15 -19.77 -0.10 -3.74 16 20 C -0.08 -1.74 9.86 22.47 0.22 -1.52 16 21 C -0.16 -2.99 10.11 22.36 0.23 -2.77 16 22 C 0.08 1.66 11.18 84.69 0.95 2.61 16 23 N -0.51 -14.45 10.36 -195.84 -2.03 -16.48 16 24 C 0.08 2.40 10.86 84.67 0.92 3.32 16 25 H 0.04 1.58 8.13 -2.39 -0.02 1.56 16 26 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 28 H 0.13 6.59 6.28 -2.39 -0.02 6.57 16 29 H 0.08 3.81 7.36 -2.39 -0.02 3.80 16 30 H 0.27 13.35 8.32 -92.71 -0.77 12.58 16 31 H 0.08 3.15 8.03 -2.39 -0.02 3.13 16 32 H 0.10 3.29 7.74 -2.39 -0.02 3.27 16 33 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 34 H 0.06 2.21 8.09 -2.39 -0.02 2.19 16 35 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 36 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -68.00 330.66 6.09 -61.91 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 1.07 Total: 27.00 kcal Atomic # 6 Polarization: 29.08 SS G_CDS: 6.43 Total: 35.51 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -3.20 Total: -86.18 kcal Atomic # 8 Polarization: -79.59 SS G_CDS: -0.24 Total: -79.83 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -68.00 6.09 -61.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120628393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.564 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds