Wall clock time and date at job start Tue Mar 31 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35650 * 116.99527 * 2 1 4 4 C 1.38705 * 120.15458 * 359.97438 * 3 2 1 5 5 C 1.38055 * 120.08561 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.38924 * 0.02562 * 5 4 3 7 7 C 1.37781 * 120.30298 * 0.02562 * 6 5 4 8 8 C 1.39713 * 119.90618 * 359.97438 * 7 6 5 9 9 C 1.47530 * 120.18970 * 179.97438 * 8 7 6 10 10 O 1.21595 * 119.99798 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00433 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46764 * 179.97438 * 12 11 9 14 14 O 1.21292 * 120.00400 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99759 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00233 * 359.97438 * 15 13 12 17 17 C 1.37099 * 120.00018 * 180.02562 * 15 13 12 18 18 H 1.08003 * 120.00147 * 22.41454 * 17 15 13 19 19 C 1.38950 * 120.00462 * 202.40505 * 17 15 13 20 20 N 1.31419 * 119.99451 * 11.59394 * 19 17 15 21 21 Si 1.86799 * 120.00594 * 191.58941 * 19 17 15 22 22 H 1.48498 * 109.46739 * 90.00070 * 21 19 17 23 23 H 1.48495 * 109.47380 * 210.00290 * 21 19 17 24 24 H 1.48500 * 109.47052 * 330.00681 * 21 19 17 25 25 H 1.08995 * 109.47410 * 60.00299 * 1 2 3 26 26 H 1.09007 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47180 * 299.99674 * 1 2 3 28 28 H 1.07995 * 119.95733 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.80701 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.84685 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.04909 * 179.72431 * 7 6 5 32 32 H 0.96998 * 119.99269 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47229 * 299.99510 * 12 11 9 34 34 H 1.08999 * 109.47152 * 60.00276 * 12 11 9 35 35 H 1.09000 * 109.47016 * 92.16062 * 16 15 13 36 36 H 1.08995 * 109.47148 * 212.16292 * 16 15 13 37 37 H 1.08993 * 109.46891 * 332.16361 * 16 15 13 38 38 H 0.96997 * 119.99689 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9205 3.6033 -0.0011 6 6 3.3037 3.6837 -0.0016 7 6 4.0667 2.5364 -0.0021 8 6 3.4441 1.2857 -0.0016 9 6 4.2550 0.0533 -0.0028 10 8 3.7094 -1.0334 -0.0018 11 7 5.6005 0.1318 -0.0038 12 6 6.4057 -1.0920 -0.0055 13 6 7.8687 -0.7307 -0.0070 14 8 8.2057 0.4345 -0.0063 15 7 8.8028 -1.7023 -0.0082 16 6 8.3959 -3.1097 -0.0075 17 6 10.1338 -1.3736 -0.0091 18 1 10.4511 -0.4049 0.3478 19 6 11.0747 -2.2868 -0.4689 20 7 10.6846 -3.3657 -1.1100 21 14 12.8941 -1.9811 -0.1760 22 1 13.2971 -2.5928 1.1157 23 1 13.6819 -2.5884 -1.2785 24 1 13.1495 -0.5189 -0.1322 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2138 2.3194 -0.0005 29 1 1.3302 4.5078 -0.0011 30 1 3.7859 4.6500 -0.0016 31 1 5.1446 2.6039 -0.0071 32 1 6.0356 0.9987 -0.0034 33 1 6.1769 -1.6787 0.8842 34 1 6.1754 -1.6772 -0.8958 35 1 8.3307 -3.4696 -1.0342 36 1 9.1314 -3.7003 0.5386 37 1 7.4227 -3.2062 0.4738 38 1 11.3414 -4.0030 -1.4313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274483376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:32 Heat of formation + Delta-G solvation = -64.446129 kcal Electronic energy + Delta-G solvation = -22721.087805 eV Core-core repulsion = 19143.878245 eV Total energy + Delta-G solvation = -3577.209560 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57248 -39.09863 -38.11317 -37.34954 -34.93962 -33.78450 -31.80469 -31.44925 -30.25556 -27.96554 -27.21940 -26.06150 -24.36957 -23.41268 -22.11977 -20.28543 -19.39944 -18.40795 -17.28835 -16.88403 -16.38644 -15.92184 -15.74761 -15.19069 -15.14388 -14.96876 -14.73911 -14.33126 -13.98429 -13.92506 -13.59381 -13.11296 -12.82293 -12.36384 -12.29582 -12.08948 -11.75138 -11.52591 -11.33632 -11.31404 -11.27872 -11.24118 -10.90355 -10.38476 -10.31470 -9.58054 -9.21624 -9.07896 -8.68980 -8.56436 -8.34055 -7.76716 -6.36210 -3.94007 0.78807 1.24962 3.02315 3.13611 3.14070 3.22941 3.27534 3.44296 3.76772 3.86923 4.11377 4.55867 4.61975 4.83390 4.88495 4.92006 4.97294 5.08550 5.12610 5.21278 5.32461 5.41851 5.62682 5.71304 5.93093 6.01181 6.05502 6.10982 6.27619 6.33682 6.52826 6.75500 6.86412 7.21464 7.24648 7.51991 7.92194 8.04277 8.39669 8.58309 9.09681 9.34090 9.85828 10.66933 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.003183 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.847566 B = 8793.620778 C = 9594.560454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.279 6.279 3 C 0.182 3.818 4 C -0.224 4.224 5 C -0.057 4.057 6 C -0.167 4.167 7 C -0.045 4.045 8 C -0.166 4.166 9 C 0.556 3.444 10 O -0.529 6.529 11 N -0.708 5.708 12 C 0.112 3.888 13 C 0.435 3.565 14 O -0.593 6.593 15 N -0.436 5.436 16 C 0.107 3.893 17 C -0.309 4.309 18 H 0.101 0.899 19 C 0.032 3.968 20 N -0.879 5.879 21 Si 0.930 3.070 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.054 0.946 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.408 0.592 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.893 8.600 2.070 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.190 6.190 3 C 0.134 3.866 4 C -0.243 4.243 5 C -0.075 4.075 6 C -0.186 4.186 7 C -0.064 4.064 8 C -0.170 4.170 9 C 0.343 3.657 10 O -0.407 6.407 11 N -0.363 5.363 12 C -0.015 4.015 13 C 0.222 3.778 14 O -0.479 6.479 15 N -0.154 5.154 16 C -0.037 4.037 17 C -0.437 4.437 18 H 0.119 0.881 19 C -0.172 4.172 20 N -0.518 5.518 21 Si 0.756 3.244 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.193 1.193 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.246 0.754 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.889 7.949 1.979 19.675 hybrid contribution 0.862 0.436 0.009 0.966 sum -17.027 8.385 1.988 19.084 Atomic orbital electron populations 1.23148 0.79001 1.04243 1.00995 1.86404 1.20510 1.25407 1.86646 1.19054 0.90953 0.84880 0.91718 1.21209 1.00179 0.92087 1.10801 1.21102 0.94742 0.96980 0.94715 1.21008 0.93762 0.98586 1.05215 1.21350 1.00517 0.90773 0.93725 1.19417 0.90793 0.94240 1.12527 1.17924 0.81842 0.88629 0.77338 1.90798 1.71767 1.28554 1.49541 1.45659 1.05325 1.10720 1.74584 1.21021 0.90361 0.87006 1.03138 1.19901 0.86582 0.86394 0.84911 1.90477 1.81634 1.18777 1.57024 1.43533 1.05618 1.04732 1.61493 1.21607 0.96874 0.83090 1.02135 1.19693 0.80232 1.03029 1.40739 0.88145 1.25385 1.00717 0.95960 0.95154 1.70008 1.34945 1.11794 1.35047 0.85870 0.81691 0.78923 0.77894 1.20299 1.20889 1.19309 0.92712 0.88024 0.92730 0.84957 0.85458 0.85182 0.84407 0.75365 0.89939 0.89680 0.91990 0.90975 0.95091 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.28 -4.01 8.57 -40.53 -0.35 -4.35 16 3 C 0.18 2.50 6.70 -38.70 -0.26 2.24 16 4 C -0.22 -2.28 9.03 -39.48 -0.36 -2.64 16 5 C -0.06 -0.51 10.03 -39.53 -0.40 -0.91 16 6 C -0.17 -1.67 10.02 -39.63 -0.40 -2.06 16 7 C -0.04 -0.56 9.54 -39.20 -0.37 -0.93 16 8 C -0.17 -2.50 5.89 -104.84 -0.62 -3.12 16 9 C 0.56 10.12 7.76 -12.47 -0.10 10.03 16 10 O -0.53 -11.09 15.16 -16.60 -0.25 -11.34 16 11 N -0.71 -13.01 5.48 -62.53 -0.34 -13.35 16 12 C 0.11 2.24 4.68 -5.20 -0.02 2.22 16 13 C 0.43 10.49 7.70 -10.98 -0.08 10.40 16 14 O -0.59 -15.65 15.36 5.55 0.09 -15.56 16 15 N -0.44 -11.13 3.02 -122.19 -0.37 -11.50 16 16 C 0.11 2.39 8.52 59.85 0.51 2.90 16 17 C -0.31 -8.52 9.29 -14.93 -0.14 -8.66 16 18 H 0.10 2.88 7.41 -52.48 -0.39 2.49 16 19 C 0.03 0.83 5.11 -17.46 -0.09 0.74 16 20 N -0.88 -23.23 10.62 55.50 0.59 -22.64 16 21 Si 0.93 20.52 29.57 -169.99 -5.03 15.49 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 28 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 29 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.14 1.61 6.40 -52.49 -0.34 1.27 16 32 H 0.41 7.18 5.47 -40.82 -0.22 6.96 16 33 H 0.08 1.57 7.40 -51.93 -0.38 1.19 16 34 H 0.09 1.68 8.11 -51.93 -0.42 1.26 16 35 H 0.06 1.44 7.54 -51.93 -0.39 1.05 16 36 H 0.07 1.69 7.06 -51.93 -0.37 1.32 16 37 H 0.03 0.58 6.36 -51.93 -0.33 0.25 16 38 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -33.41 323.11 -6.50 -39.91 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.37 Total: 7.10 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -1.33 Total: 11.38 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.12 Total: -47.50 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.51 Total: -31.26 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.41 -6.50 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274483376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.539 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds