Wall clock time and date at job start Tue Mar 31 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35650 * 116.99527 * 2 1 4 4 C 1.38705 * 120.15458 * 359.97438 * 3 2 1 5 5 C 1.38055 * 120.08561 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.38924 * 0.02562 * 5 4 3 7 7 C 1.37781 * 120.30298 * 0.02562 * 6 5 4 8 8 C 1.39713 * 119.90618 * 359.97438 * 7 6 5 9 9 C 1.47530 * 120.18970 * 179.97438 * 8 7 6 10 10 O 1.21595 * 119.99798 * 179.97438 * 9 8 7 11 11 N 1.34780 * 120.00433 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.46764 * 179.97438 * 12 11 9 14 14 O 1.21292 * 120.00400 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99759 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00233 * 359.97438 * 15 13 12 17 17 C 1.37099 * 120.00018 * 180.02562 * 15 13 12 18 18 H 1.08003 * 120.00147 * 22.41454 * 17 15 13 19 19 C 1.38950 * 120.00462 * 202.40505 * 17 15 13 20 20 N 1.31419 * 119.99451 * 11.59394 * 19 17 15 21 21 Si 1.86799 * 120.00594 * 191.58941 * 19 17 15 22 22 H 1.48498 * 109.46739 * 90.00070 * 21 19 17 23 23 H 1.48495 * 109.47380 * 210.00290 * 21 19 17 24 24 H 1.48500 * 109.47052 * 330.00681 * 21 19 17 25 25 H 1.08995 * 109.47410 * 60.00299 * 1 2 3 26 26 H 1.09007 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47180 * 299.99674 * 1 2 3 28 28 H 1.07995 * 119.95733 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.80701 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.84685 * 180.02562 * 6 5 4 31 31 H 1.08000 * 120.04909 * 179.72431 * 7 6 5 32 32 H 0.96998 * 119.99269 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47229 * 299.99510 * 12 11 9 34 34 H 1.08999 * 109.47152 * 60.00276 * 12 11 9 35 35 H 1.09000 * 109.47016 * 92.16062 * 16 15 13 36 36 H 1.08995 * 109.47148 * 212.16292 * 16 15 13 37 37 H 1.08993 * 109.46891 * 332.16361 * 16 15 13 38 38 H 0.96997 * 119.99689 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9205 3.6033 -0.0011 6 6 3.3037 3.6837 -0.0016 7 6 4.0667 2.5364 -0.0021 8 6 3.4441 1.2857 -0.0016 9 6 4.2550 0.0533 -0.0028 10 8 3.7094 -1.0334 -0.0018 11 7 5.6005 0.1318 -0.0038 12 6 6.4057 -1.0920 -0.0055 13 6 7.8687 -0.7307 -0.0070 14 8 8.2057 0.4345 -0.0063 15 7 8.8028 -1.7023 -0.0082 16 6 8.3959 -3.1097 -0.0075 17 6 10.1338 -1.3736 -0.0091 18 1 10.4511 -0.4049 0.3478 19 6 11.0747 -2.2868 -0.4689 20 7 10.6846 -3.3657 -1.1100 21 14 12.8941 -1.9811 -0.1760 22 1 13.2971 -2.5928 1.1157 23 1 13.6819 -2.5884 -1.2785 24 1 13.1495 -0.5189 -0.1322 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2138 2.3194 -0.0005 29 1 1.3302 4.5078 -0.0011 30 1 3.7859 4.6500 -0.0016 31 1 5.1446 2.6039 -0.0071 32 1 6.0356 0.9987 -0.0034 33 1 6.1769 -1.6787 0.8842 34 1 6.1754 -1.6772 -0.8958 35 1 8.3307 -3.4696 -1.0342 36 1 9.1314 -3.7003 0.5386 37 1 7.4227 -3.2062 0.4738 38 1 11.3414 -4.0030 -1.4313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274483376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:31 Heat of formation + Delta-G solvation = -86.907272 kcal Electronic energy + Delta-G solvation = -22722.061793 eV Core-core repulsion = 19143.878245 eV Total energy + Delta-G solvation = -3578.183548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63395 -40.66687 -39.67411 -38.25860 -36.86656 -35.38468 -33.73567 -32.51813 -31.09149 -29.49181 -28.19168 -27.80321 -26.15034 -24.60061 -22.98345 -21.57686 -21.12703 -19.57501 -18.94701 -18.39488 -17.62559 -17.33108 -16.97278 -16.63422 -16.44357 -16.39822 -15.97935 -15.61188 -15.59977 -15.47515 -14.53550 -14.43948 -14.21420 -13.90783 -13.54943 -13.36484 -13.17782 -13.11254 -13.09052 -12.66494 -12.55564 -12.36309 -12.13509 -12.10302 -12.02202 -11.05986 -10.95247 -10.54471 -10.28511 -10.01056 -9.77767 -9.23787 -8.36482 -6.03613 -0.15109 0.40864 1.36592 1.42028 1.54374 1.83288 1.90802 1.99909 2.30233 2.35813 2.84513 3.00557 3.05747 3.65730 3.79772 3.87968 4.00654 4.23604 4.29640 4.37515 4.37805 4.40454 4.44520 4.53841 4.60626 4.73488 4.84915 4.99191 5.16329 5.24735 5.32741 5.33972 5.42453 5.46842 5.76266 6.02397 6.37024 6.40766 6.54579 7.07361 7.16381 7.36788 7.87711 8.65248 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.003183 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.847566 B = 8793.620778 C = 9594.560454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.318 6.318 3 C 0.166 3.834 4 C -0.219 4.219 5 C -0.042 4.042 6 C -0.165 4.165 7 C -0.054 4.054 8 C -0.203 4.203 9 C 0.555 3.445 10 O -0.565 6.565 11 N -0.709 5.709 12 C 0.125 3.875 13 C 0.431 3.569 14 O -0.621 6.621 15 N -0.451 5.451 16 C 0.116 3.884 17 C -0.347 4.347 18 H 0.079 0.921 19 C -0.002 4.002 20 N -0.894 5.894 21 Si 0.995 3.005 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.273 1.273 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.163 0.837 29 H 0.170 0.830 30 H 0.158 0.842 31 H 0.135 0.865 32 H 0.411 0.589 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.294 10.159 2.244 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.230 6.230 3 C 0.117 3.883 4 C -0.237 4.237 5 C -0.060 4.060 6 C -0.183 4.183 7 C -0.072 4.072 8 C -0.207 4.207 9 C 0.344 3.656 10 O -0.445 6.445 11 N -0.364 5.364 12 C -0.002 4.002 13 C 0.220 3.780 14 O -0.509 6.509 15 N -0.169 5.169 16 C -0.027 4.027 17 C -0.475 4.475 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.532 5.532 21 Si 0.818 3.182 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.198 1.198 25 H 0.091 0.909 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.181 0.819 29 H 0.187 0.813 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.250 0.750 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.313 9.501 2.151 21.631 hybrid contribution 1.183 0.016 -0.065 1.185 sum -18.130 9.517 2.086 20.582 Atomic orbital electron populations 1.23441 0.76535 1.05426 1.02772 1.86341 1.23294 1.26477 1.86842 1.19335 0.90736 0.85944 0.92243 1.21576 1.01569 0.91166 1.09430 1.21630 0.94600 0.98040 0.91689 1.21385 0.94427 0.98698 1.03806 1.21431 1.00735 0.90868 0.94208 1.19347 0.91492 0.93499 1.16384 1.18490 0.81497 0.89575 0.76011 1.90756 1.72212 1.30154 1.51378 1.45666 1.05593 1.10173 1.74971 1.20812 0.87699 0.87963 1.03730 1.20514 0.88015 0.85849 0.83661 1.90442 1.82562 1.19943 1.57958 1.43764 1.05426 1.06001 1.61693 1.21544 0.98134 0.81415 1.01589 1.19708 0.81812 1.03054 1.42902 0.90301 1.26175 1.04610 0.95408 0.94211 1.70084 1.36440 1.12079 1.34641 0.84906 0.76399 0.78498 0.78379 1.19047 1.19885 1.19760 0.90870 0.87374 0.90817 0.81919 0.81293 0.82402 0.84731 0.75019 0.88820 0.89397 0.93116 0.92185 0.91688 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -9.08 8.57 -68.72 -0.59 -9.67 16 3 C 0.17 4.41 6.70 22.84 0.15 4.56 16 4 C -0.22 -3.78 9.03 22.34 0.20 -3.58 16 5 C -0.04 -0.58 10.03 22.30 0.22 -0.35 16 6 C -0.17 -2.81 10.02 22.24 0.22 -2.59 16 7 C -0.05 -1.30 9.54 22.52 0.21 -1.08 16 8 C -0.20 -6.18 5.89 -20.01 -0.12 -6.30 16 9 C 0.55 20.87 7.76 86.69 0.67 21.54 16 10 O -0.56 -24.48 15.16 16.90 0.26 -24.23 16 11 N -0.71 -26.87 5.48 -470.01 -2.57 -29.45 16 12 C 0.13 5.12 4.68 85.63 0.40 5.52 16 13 C 0.43 21.34 7.70 87.66 0.67 22.02 16 14 O -0.62 -33.85 15.36 -3.07 -0.05 -33.89 16 15 N -0.45 -23.57 3.02 -658.89 -1.99 -25.56 16 16 C 0.12 5.28 8.52 127.77 1.09 6.37 16 17 C -0.35 -19.63 9.29 84.04 0.78 -18.85 16 18 H 0.08 4.70 7.41 -2.91 -0.02 4.68 16 19 C 0.00 -0.09 5.11 84.93 0.43 0.34 16 20 N -0.89 -47.35 10.62 21.66 0.23 -47.12 16 21 Si 1.00 42.04 29.57 68.60 2.03 44.07 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 26 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 28 H 0.16 1.73 6.30 -2.91 -0.02 1.71 16 29 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 30 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.13 3.19 6.40 -2.91 -0.02 3.17 16 32 H 0.41 15.02 5.47 -92.71 -0.51 14.51 16 33 H 0.09 3.60 7.40 -2.39 -0.02 3.59 16 34 H 0.09 3.54 8.11 -2.39 -0.02 3.52 16 35 H 0.05 2.39 7.54 -2.39 -0.02 2.37 16 36 H 0.06 2.83 7.06 -2.39 -0.02 2.82 16 37 H 0.06 2.45 6.36 -2.39 -0.02 2.44 16 38 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -74.72 323.11 3.97 -70.74 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.60 Total: 26.20 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 6.06 Total: 28.90 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.33 Total: -102.12 kcal Atomic # 8 Polarization: -67.41 SS G_CDS: -0.38 Total: -67.79 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.72 3.97 -70.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274483376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.163 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds