Wall clock time and date at job start Tue Mar 31 2020 03:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.34779 * 119.99965 * 85.00573 * 12 2 1 14 14 O 1.21581 * 120.00042 * 359.97438 * 13 12 2 15 15 C 1.47537 * 119.99638 * 179.97438 * 13 12 2 16 16 C 1.39702 * 120.19551 * 359.97438 * 15 13 12 17 17 C 1.37784 * 119.91108 * 179.97438 * 16 15 13 18 18 C 1.38553 * 120.30082 * 0.02562 * 17 16 15 19 19 C 1.38053 * 120.38577 * 359.97438 * 18 17 16 20 20 C 1.38712 * 120.08851 * 359.74293 * 19 18 17 21 21 O 1.35652 * 120.15381 * 180.27859 * 20 19 18 22 22 C 1.42897 * 117.00070 * 0.25577 * 21 20 19 23 23 C 1.50699 * 109.47574 * 180.02562 * 22 21 20 24 24 N 1.34772 * 120.00576 * 179.97438 * 23 22 21 25 25 O 1.21286 * 119.99673 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 30 30 H 0.97003 * 119.99991 * 264.99646 * 12 2 1 31 31 H 1.08002 * 120.04541 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.85762 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.80986 * 179.97438 * 18 17 16 34 34 H 1.08007 * 119.95843 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47154 * 299.99892 * 22 21 20 36 36 H 1.09002 * 109.47585 * 59.99538 * 22 21 20 37 37 H 0.97006 * 119.99785 * 0.02562 * 24 23 22 38 38 H 0.97000 * 120.00237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8577 1.1613 -2.4118 15 6 2.6395 -0.7137 -3.5615 16 6 2.9738 -2.0689 -3.5031 17 6 3.4325 -2.7127 -4.6316 18 6 3.5645 -2.0220 -5.8254 19 6 3.2377 -0.6827 -5.8972 20 6 2.7689 -0.0201 -4.7723 21 8 2.4420 1.2946 -4.8427 22 6 2.5999 1.9354 -6.1102 23 6 2.1918 3.3816 -5.9963 24 7 2.2583 4.1876 -7.0744 25 8 1.8035 3.8203 -4.9343 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7094 1.1619 3.4844 30 1 2.2491 -1.6318 -1.1525 31 1 2.8728 -2.6112 -2.5746 32 1 3.6910 -3.7603 -4.5853 33 1 3.9252 -2.5344 -6.7051 34 1 3.3430 -0.1511 -6.8315 35 1 3.6433 1.8761 -6.4199 36 1 1.9726 1.4377 -6.8497 37 1 2.5686 3.8367 -7.9239 38 1 1.9953 5.1184 -7.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299565237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:41 Heat of formation + Delta-G solvation = -79.778503 kcal Electronic energy + Delta-G solvation = -22974.180966 eV Core-core repulsion = 19396.306545 eV Total energy + Delta-G solvation = -3577.874422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53786 -39.36935 -38.12995 -37.07575 -34.59985 -33.87685 -32.39424 -31.25050 -30.23414 -28.74857 -28.00363 -25.15236 -23.79844 -22.54462 -21.04402 -20.76765 -19.31148 -18.59081 -17.83207 -17.22471 -16.46095 -16.43249 -15.88191 -15.69369 -14.94796 -14.68709 -14.49574 -14.44181 -14.08063 -13.76067 -13.56368 -12.87099 -12.69208 -12.46717 -12.25559 -11.70692 -11.53804 -11.26747 -11.18939 -10.98563 -10.89548 -10.60660 -10.21062 -10.12915 -10.00928 -9.89964 -9.01525 -8.93137 -8.83376 -8.44232 -8.22414 -7.70386 -6.02498 -4.11647 1.01947 1.38284 2.46955 2.61411 3.30713 3.36602 3.37926 3.39107 3.70217 4.15449 4.29009 4.44692 4.51868 4.69109 4.77692 4.81794 4.83408 5.09293 5.25850 5.29339 5.46828 5.59912 5.86453 6.19012 6.23986 6.42351 6.53810 6.67307 6.96359 7.02117 7.11835 7.28809 7.37631 7.62136 7.70215 7.82096 8.05119 8.10295 8.26804 8.81244 8.90988 9.31633 9.56242 11.03515 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.004177 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.999089 B = 6701.115922 C = 8079.274443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.536 3.464 14 O -0.520 6.520 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.167 4.167 18 C -0.065 4.065 19 C -0.225 4.225 20 C 0.175 3.825 21 O -0.249 6.249 22 C 0.033 3.967 23 C 0.512 3.488 24 N -0.856 5.856 25 O -0.494 6.494 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.089 0.911 29 H 0.264 0.736 30 H 0.384 0.616 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -3.609 -23.125 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.357 5.357 13 C 0.321 3.679 14 O -0.397 6.397 15 C -0.155 4.155 16 C -0.068 4.068 17 C -0.185 4.185 18 C -0.083 4.083 19 C -0.244 4.244 20 C 0.127 3.873 21 O -0.159 6.159 22 C -0.046 4.046 23 C 0.294 3.706 24 N -0.424 5.424 25 O -0.365 6.365 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.218 0.782 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.227 0.773 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.916 -2.364 -21.994 22.660 hybrid contribution 0.590 -0.840 0.103 1.032 sum 5.507 -3.204 -21.890 22.799 Atomic orbital electron populations 1.22066 0.98513 0.98971 1.00932 1.18725 0.90997 0.94061 0.79819 0.93268 1.21224 1.32309 1.13159 0.90378 0.92141 1.24890 0.94866 0.94986 0.98993 1.69915 1.35897 1.22453 1.23755 0.86460 0.78575 0.79799 0.82300 1.20609 1.21129 1.19883 1.46434 1.65630 1.13297 1.10378 1.18000 0.79716 0.87096 0.83083 1.90867 1.49526 1.14795 1.84463 1.19851 1.07914 0.94236 0.93468 1.21302 0.94172 0.92299 0.99019 1.20981 1.04155 1.00477 0.92867 1.21007 0.96198 0.93293 0.97818 1.21154 1.08894 0.96663 0.97710 1.19075 0.92143 0.82964 0.93106 1.86533 1.80222 1.19655 1.29511 1.22483 1.02576 0.92094 0.87469 1.20066 0.78507 0.87618 0.84364 1.43658 1.71705 1.14530 1.12523 1.90934 1.42802 1.75538 1.27226 0.96544 0.95588 0.89229 0.92640 0.78244 0.84600 0.85457 0.85648 0.85268 0.89111 0.89116 0.77282 0.76136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.26 37.16 0.34 -3.55 16 2 C 0.27 7.24 2.56 -69.08 -0.18 7.06 16 3 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16 4 C -0.53 -14.72 8.73 -34.44 -0.30 -15.02 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -25.90 11.32 55.43 0.63 -25.28 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.71 -16.12 5.02 -55.98 -0.28 -16.40 16 13 C 0.54 12.29 7.73 -12.47 -0.10 12.19 16 14 O -0.52 -14.28 14.82 -16.58 -0.25 -14.52 16 15 C -0.15 -2.68 5.89 -104.85 -0.62 -3.29 16 16 C -0.05 -0.68 9.53 -39.20 -0.37 -1.05 16 17 C -0.17 -1.80 10.02 -39.63 -0.40 -2.20 16 18 C -0.06 -0.64 10.03 -39.53 -0.40 -1.03 16 19 C -0.23 -2.51 9.03 -39.47 -0.36 -2.87 16 20 C 0.18 2.79 6.70 -38.69 -0.26 2.53 16 21 O -0.25 -4.42 7.74 -48.92 -0.38 -4.80 16 22 C 0.03 0.37 5.22 36.01 0.19 0.56 16 23 C 0.51 6.63 8.18 -10.99 -0.09 6.54 16 24 N -0.86 -5.95 8.87 31.22 0.28 -5.68 16 25 O -0.49 -9.88 17.34 -14.36 -0.25 -10.13 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 30 H 0.38 7.46 6.57 -40.82 -0.27 7.19 16 31 H 0.14 1.68 6.40 -52.49 -0.34 1.35 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 35 H 0.09 0.70 7.65 -51.93 -0.40 0.30 16 36 H 0.09 0.69 7.67 -51.93 -0.40 0.29 16 37 H 0.40 1.12 8.83 -40.82 -0.36 0.76 16 38 H 0.41 2.57 8.93 -40.82 -0.36 2.21 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -39.55 328.60 -7.34 -46.89 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.40 Total: 7.13 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.63 Total: 1.60 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.62 Total: -47.36 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.87 Total: -29.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -39.55 -7.34 -46.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299565237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.890 kcal (2) G-P(sol) polarization free energy of solvation -39.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds