Wall clock time and date at job start Tue Mar 31 2020 03:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47247 * 89.99769 * 8 6 4 10 10 H 1.48496 * 109.47178 * 209.99766 * 8 6 4 11 11 H 1.48504 * 109.47095 * 329.99574 * 8 6 4 12 12 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 13 13 C 1.34779 * 119.99965 * 85.00573 * 12 2 1 14 14 O 1.21581 * 120.00042 * 359.97438 * 13 12 2 15 15 C 1.47537 * 119.99638 * 179.97438 * 13 12 2 16 16 C 1.39702 * 120.19551 * 359.97438 * 15 13 12 17 17 C 1.37784 * 119.91108 * 179.97438 * 16 15 13 18 18 C 1.38553 * 120.30082 * 0.02562 * 17 16 15 19 19 C 1.38053 * 120.38577 * 359.97438 * 18 17 16 20 20 C 1.38712 * 120.08851 * 359.74293 * 19 18 17 21 21 O 1.35652 * 120.15381 * 180.27859 * 20 19 18 22 22 C 1.42897 * 117.00070 * 0.25577 * 21 20 19 23 23 C 1.50699 * 109.47574 * 180.02562 * 22 21 20 24 24 N 1.34772 * 120.00576 * 179.97438 * 23 22 21 25 25 O 1.21286 * 119.99673 * 359.97438 * 23 22 21 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 30 30 H 0.97003 * 119.99991 * 264.99646 * 12 2 1 31 31 H 1.08002 * 120.04541 * 359.97438 * 16 15 13 32 32 H 1.08000 * 119.85762 * 179.97438 * 17 16 15 33 33 H 1.07999 * 119.80986 * 179.97438 * 18 17 16 34 34 H 1.08007 * 119.95843 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.47154 * 299.99892 * 22 21 20 36 36 H 1.09002 * 109.47585 * 59.99538 * 22 21 20 37 37 H 0.97006 * 119.99785 * 0.02562 * 24 23 22 38 38 H 0.97000 * 120.00237 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.6303 -0.5440 4.4120 10 1 1.3443 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3571 14 8 1.8577 1.1613 -2.4118 15 6 2.6395 -0.7137 -3.5615 16 6 2.9738 -2.0689 -3.5031 17 6 3.4325 -2.7127 -4.6316 18 6 3.5645 -2.0220 -5.8254 19 6 3.2377 -0.6827 -5.8972 20 6 2.7689 -0.0201 -4.7723 21 8 2.4420 1.2946 -4.8427 22 6 2.5999 1.9354 -6.1102 23 6 2.1918 3.3816 -5.9963 24 7 2.2583 4.1876 -7.0744 25 8 1.8035 3.8203 -4.9343 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7094 1.1619 3.4844 30 1 2.2491 -1.6318 -1.1525 31 1 2.8728 -2.6112 -2.5746 32 1 3.6910 -3.7603 -4.5853 33 1 3.9252 -2.5344 -6.7051 34 1 3.3430 -0.1511 -6.8315 35 1 3.6433 1.8761 -6.4199 36 1 1.9726 1.4377 -6.8497 37 1 2.5686 3.8367 -7.9239 38 1 1.9953 5.1184 -7.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299565237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:40 Heat of formation + Delta-G solvation = -112.036664 kcal Electronic energy + Delta-G solvation = -22975.579785 eV Core-core repulsion = 19396.306545 eV Total energy + Delta-G solvation = -3579.273240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64267 -40.58276 -39.65383 -38.13176 -36.65911 -34.80565 -34.36596 -32.55377 -31.18079 -30.50265 -29.06514 -27.36645 -25.09382 -23.64588 -22.61748 -21.82714 -21.07426 -19.83744 -18.88730 -18.45262 -17.73912 -17.37750 -17.27453 -17.23239 -16.54130 -16.03156 -15.84149 -15.61447 -15.40524 -15.18122 -14.79914 -14.59171 -14.26424 -13.75559 -13.64402 -13.40005 -12.96045 -12.87548 -12.76085 -12.64819 -12.29086 -12.17460 -12.10527 -12.06070 -11.13092 -11.11265 -10.75891 -10.68312 -10.55178 -10.04430 -9.70435 -9.18894 -8.17400 -6.36488 -0.03554 0.45395 1.43809 1.46116 1.50494 1.56945 1.76017 2.09414 2.35581 2.64231 2.83860 2.95396 3.12580 3.74416 3.86861 3.93894 4.03242 4.11582 4.16946 4.32605 4.49578 4.57792 4.71099 4.88972 4.91659 5.07125 5.21404 5.37870 5.42595 5.51926 5.60749 5.66804 5.78314 5.85662 5.91560 6.07985 6.30676 6.51804 6.71381 7.00880 7.30853 7.31708 7.61604 8.89665 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016884 B = 0.004177 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.999089 B = 6701.115922 C = 8079.274443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.272 3.728 3 H -0.010 1.010 4 C -0.547 4.547 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.980 3.020 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.255 1.255 12 N -0.704 5.704 13 C 0.530 3.470 14 O -0.581 6.581 15 C -0.199 4.199 16 C -0.053 4.053 17 C -0.160 4.160 18 C -0.043 4.043 19 C -0.214 4.214 20 C 0.156 3.844 21 O -0.305 6.305 22 C 0.026 3.974 23 C 0.506 3.494 24 N -0.823 5.823 25 O -0.584 6.584 26 H 0.003 0.997 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.266 0.734 30 H 0.402 0.598 31 H 0.140 0.860 32 H 0.164 0.836 33 H 0.176 0.824 34 H 0.173 0.827 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.424 0.576 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -7.129 -26.306 28.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.168 3.832 3 H 0.008 0.992 4 C -0.585 4.585 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.803 3.197 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.179 1.179 12 N -0.354 5.354 13 C 0.318 3.682 14 O -0.463 6.463 15 C -0.203 4.203 16 C -0.072 4.072 17 C -0.177 4.177 18 C -0.061 4.061 19 C -0.233 4.233 20 C 0.108 3.892 21 O -0.217 6.217 22 C -0.052 4.052 23 C 0.290 3.710 24 N -0.391 5.391 25 O -0.462 6.462 26 H 0.022 0.978 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.238 0.762 31 H 0.158 0.842 32 H 0.182 0.818 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.257 0.743 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.997 -5.932 -25.290 26.902 hybrid contribution 0.004 0.280 0.857 0.902 sum 7.000 -5.653 -24.433 26.037 Atomic orbital electron populations 1.21875 0.98443 0.99425 0.99189 1.18321 0.91069 0.91688 0.82109 0.99247 1.21537 1.32721 1.13652 0.90605 0.90564 1.25916 0.94774 0.95605 1.02601 1.70087 1.37047 1.24092 1.24659 0.85238 0.77692 0.79243 0.77495 1.20346 1.20799 1.17906 1.46156 1.65810 1.13965 1.09499 1.18930 0.78241 0.86620 0.84389 1.90824 1.52224 1.17622 1.85597 1.19583 1.12529 0.96111 0.92034 1.21430 0.94316 0.90639 1.00807 1.21429 1.02302 1.02073 0.91945 1.21655 0.92964 0.92566 0.98890 1.21611 1.06876 0.97373 0.97390 1.19411 0.93036 0.82749 0.94000 1.86464 1.80930 1.21033 1.33237 1.22908 1.05760 0.90369 0.86160 1.20677 0.77206 0.89016 0.84071 1.43403 1.69290 1.14214 1.12154 1.90905 1.47327 1.77215 1.30771 0.97766 0.93758 0.91383 0.92523 0.76209 0.84228 0.81847 0.80675 0.80983 0.85080 0.85010 0.74310 0.75577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.42 9.26 71.98 0.67 -6.75 16 2 C 0.27 15.81 2.56 44.25 0.11 15.93 16 3 H -0.01 -0.72 7.58 -2.39 -0.02 -0.74 16 4 C -0.55 -31.12 8.73 25.60 0.22 -30.90 16 5 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -56.34 11.32 21.45 0.24 -56.10 16 8 Si 0.98 43.92 29.54 68.60 2.03 45.94 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 12 N -0.70 -34.02 5.02 -449.27 -2.26 -36.27 16 13 C 0.53 26.14 7.73 86.70 0.67 26.81 16 14 O -0.58 -35.23 14.82 16.95 0.25 -34.98 16 15 C -0.20 -7.22 5.89 -20.01 -0.12 -7.34 16 16 C -0.05 -1.39 9.53 22.52 0.21 -1.17 16 17 C -0.16 -2.71 10.02 22.24 0.22 -2.48 16 18 C -0.04 -0.58 10.03 22.30 0.22 -0.35 16 19 C -0.21 -3.80 9.03 22.34 0.20 -3.60 16 20 C 0.16 4.86 6.70 22.85 0.15 5.02 16 21 O -0.31 -11.18 7.74 -60.74 -0.47 -11.65 16 22 C 0.03 0.53 5.22 71.24 0.37 0.90 16 23 C 0.51 13.32 8.18 87.66 0.72 14.04 16 24 N -0.82 -10.30 8.87 -173.53 -1.54 -11.84 16 25 O -0.58 -25.43 17.34 15.99 0.28 -25.16 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 4.14 6.07 -2.39 -0.01 4.13 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.40 16.12 6.57 -92.71 -0.61 15.51 16 31 H 0.14 3.33 6.40 -2.91 -0.02 3.31 16 32 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 33 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 34 H 0.17 1.46 6.30 -2.91 -0.02 1.44 16 35 H 0.13 1.53 7.65 -2.39 -0.02 1.51 16 36 H 0.13 1.52 7.67 -2.39 -0.02 1.50 16 37 H 0.42 1.02 8.83 -92.70 -0.82 0.20 16 38 H 0.41 4.91 8.93 -92.71 -0.83 4.08 16 Total: -1.00 -99.47 328.60 1.52 -97.95 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -1.12 Total: 20.95 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 4.11 Total: 11.15 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -3.55 Total: -104.21 kcal Atomic # 8 Polarization: -71.85 SS G_CDS: 0.06 Total: -71.79 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -99.47 1.52 -97.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299565237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.086 kcal (2) G-P(sol) polarization free energy of solvation -99.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds