Wall clock time and date at job start Tue Mar 31 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21329 * 119.99651 * 2 1 4 4 C 1.46610 * 120.00390 * 179.97438 * 2 1 3 5 5 C 1.41570 * 126.51901 * 180.28672 * 4 2 1 6 6 C 1.36240 * 106.98331 * 180.19230 * 5 4 2 7 7 C 1.46849 * 125.80250 * 179.84986 * 6 5 4 8 8 O 1.21668 * 120.00032 * 184.75797 * 7 6 5 9 9 N 1.34779 * 119.99776 * 4.75540 * 7 6 5 10 10 C 1.47580 * 134.49236 * 174.52950 * 9 7 6 11 11 C 1.53939 * 86.11670 * 155.35666 * 10 9 7 12 12 O 1.42893 * 113.74705 * 269.15632 * 11 10 9 13 13 C 1.50710 * 113.73939 * 137.95335 * 11 10 9 14 14 H 1.08002 * 119.99689 * 1.92252 * 13 11 10 15 15 C 1.37877 * 120.00179 * 181.92950 * 13 11 10 16 16 N 1.31517 * 119.99516 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 120.00194 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47162 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.46928 * 300.00250 * 17 15 13 20 20 H 1.48500 * 109.46785 * 59.99883 * 17 15 13 21 21 C 1.47807 * 134.45600 * 354.39976 * 9 7 6 22 22 N 1.37836 * 108.39838 * 359.58478 * 6 5 4 23 23 C 1.46502 * 125.34716 * 180.28474 * 22 6 5 24 24 C 1.34111 * 109.30752 * 0.26637 * 22 6 5 25 25 H 1.09004 * 109.47378 * 240.00007 * 1 2 3 26 26 H 1.08998 * 109.47357 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47079 * 120.00111 * 1 2 3 28 28 H 1.07997 * 126.51068 * 0.05727 * 5 4 2 29 29 H 1.09004 * 113.76674 * 41.06185 * 10 9 7 30 30 H 1.08993 * 113.87350 * 269.67706 * 10 9 7 31 31 H 0.96706 * 114.00150 * 178.08129 * 12 11 10 32 32 H 0.97005 * 119.99312 * 180.02562 * 16 15 13 33 33 H 1.09006 * 113.77099 * 90.38142 * 21 9 7 34 34 H 1.08999 * 113.83695 * 318.91262 * 21 9 7 35 35 H 1.09006 * 109.46898 * 94.81446 * 23 22 6 36 36 H 1.09004 * 109.46980 * 214.81268 * 23 22 6 37 37 H 1.08992 * 109.46918 * 334.81599 * 23 22 6 38 38 H 1.07993 * 125.83241 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0508 0.0000 4 6 2.2401 -1.2696 0.0006 5 6 3.6467 -1.4303 0.0063 6 6 3.8942 -2.7700 0.0003 7 6 5.2215 -3.3983 0.0000 8 8 5.3222 -4.6072 -0.0931 9 7 6.3281 -2.6358 0.1029 10 6 7.7704 -2.9187 0.2354 11 6 7.9936 -1.5278 -0.3854 12 8 8.1011 -1.5442 -1.8102 13 6 9.0916 -0.7366 0.2776 14 1 9.6574 -1.1722 1.0879 15 6 9.3738 0.5434 -0.1502 16 7 8.6850 1.0736 -1.1372 17 14 10.7343 1.5244 0.6719 18 1 10.8373 2.8605 0.0320 19 1 10.4236 1.6886 2.1147 20 1 12.0240 0.8036 0.5223 21 6 6.5837 -1.1802 0.1258 22 7 2.6871 -3.4354 0.0005 23 6 2.5218 -4.8911 0.0009 24 6 1.6878 -2.5411 0.0006 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 4.3836 -0.6408 0.0120 29 1 8.1164 -3.7403 -0.3918 30 1 8.1112 -2.9989 1.2676 31 1 8.2120 -0.6690 -2.2064 32 1 8.8838 1.9740 -1.4384 33 1 6.5734 -0.7480 1.1265 34 1 5.9840 -0.6163 -0.5886 35 1 2.3951 -5.2421 1.0251 36 1 1.6424 -5.1570 -0.5857 37 1 3.4048 -5.3571 -0.4363 38 1 0.6328 -2.7720 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331588935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:10 Heat of formation + Delta-G solvation = -31.691883 kcal Electronic energy + Delta-G solvation = -23421.503358 eV Core-core repulsion = 19845.714129 eV Total energy + Delta-G solvation = -3575.789229 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51099 -39.30236 -38.59586 -37.14990 -34.05499 -32.94593 -32.19951 -31.06252 -29.39048 -27.90005 -26.79421 -25.35016 -25.29697 -22.52374 -21.79159 -19.78454 -19.19245 -18.12663 -17.48654 -16.83973 -15.95537 -15.72109 -15.34192 -15.13302 -14.74879 -14.66608 -14.63790 -14.38768 -14.17673 -13.55757 -13.17839 -12.61694 -12.54973 -12.41113 -12.37062 -12.25821 -12.07131 -11.97586 -11.92821 -11.54672 -11.03694 -10.98581 -10.50664 -10.27465 -9.78648 -9.58533 -9.27228 -8.79102 -8.74926 -8.45686 -8.29667 -7.84199 -6.36268 -4.47154 1.41805 1.78977 2.60698 3.19652 3.25133 3.25934 3.27540 3.55627 3.76129 4.21701 4.31377 4.70215 4.73457 4.85339 4.94299 5.09787 5.12922 5.24311 5.33248 5.45027 5.54507 5.59628 5.79856 5.92605 6.00533 6.12044 6.22774 6.36296 6.47252 6.54654 6.65952 6.76721 6.88791 7.07863 7.11681 7.65422 7.80438 7.82501 8.35753 8.55489 8.63755 9.23844 9.43561 10.70711 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.016294 B = 0.004883 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.026473 B = 5732.709091 C = 7104.049160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.420 3.580 3 O -0.467 6.467 4 C -0.271 4.271 5 C -0.084 4.084 6 C -0.044 4.044 7 C 0.599 3.401 8 O -0.574 6.574 9 N -0.618 5.618 10 C 0.117 3.883 11 C 0.240 3.760 12 O -0.572 6.572 13 C -0.540 4.540 14 H 0.071 0.929 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.908 3.092 18 H -0.284 1.284 19 H -0.273 1.273 20 H -0.274 1.274 21 C 0.074 3.926 22 N -0.399 5.399 23 C 0.056 3.944 24 C 0.068 3.932 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.393 0.607 32 H 0.275 0.725 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.115 0.885 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.138 -5.551 2.701 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.299 3.701 3 O -0.343 6.343 4 C -0.278 4.278 5 C -0.108 4.108 6 C -0.155 4.155 7 C 0.390 3.610 8 O -0.458 6.458 9 N -0.350 5.350 10 C -0.004 4.004 11 C 0.198 3.802 12 O -0.384 6.384 13 C -0.579 4.579 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.735 3.265 18 H -0.210 1.210 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.048 4.048 22 N -0.070 5.070 23 C -0.084 4.084 24 C -0.073 4.073 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.179 0.821 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.248 0.752 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.977 -6.591 2.602 16.569 hybrid contribution 0.404 1.065 0.369 1.197 sum -14.572 -5.527 2.971 15.866 Atomic orbital electron populations 1.22211 0.94404 1.04679 1.03964 1.21514 0.90753 0.86837 0.71014 1.90578 1.72184 1.33985 1.37539 1.20268 0.94445 0.93529 1.19605 1.21800 0.95523 0.94521 0.98927 1.19892 0.86434 0.91455 1.17674 1.16566 0.81966 0.85307 0.77196 1.90664 1.86852 1.13838 1.54403 1.49907 1.05923 1.10269 1.68873 1.23506 0.76232 1.00242 1.00462 1.19822 0.90264 0.89373 0.80704 1.86056 1.95560 1.37175 1.19608 1.21426 1.18513 0.99094 1.18822 0.91049 1.25064 0.96069 0.97263 0.94539 1.69390 1.40183 1.16894 1.27018 0.86390 0.81733 0.78807 0.79607 1.20974 1.19869 1.19891 1.24586 0.99838 0.78938 1.01443 1.43624 1.05010 1.07338 1.51051 1.22470 1.05693 0.76418 1.03846 1.22463 0.93647 0.88001 1.03236 0.89349 0.90072 0.89323 0.82082 0.90868 0.89269 0.75246 0.91519 0.89579 0.90552 0.90439 0.89913 0.86696 0.80394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 9.76 36.01 0.35 -1.29 16 2 C 0.42 5.85 7.24 -30.93 -0.22 5.62 16 3 O -0.47 -8.55 17.65 5.52 0.10 -8.45 16 4 C -0.27 -3.95 6.12 -105.11 -0.64 -4.59 16 5 C -0.08 -1.49 9.73 -39.03 -0.38 -1.87 16 6 C -0.04 -0.79 6.81 -82.40 -0.56 -1.35 16 7 C 0.60 12.49 8.01 -12.78 -0.10 12.39 16 8 O -0.57 -12.63 15.19 5.22 0.08 -12.55 16 9 N -0.62 -13.30 3.61 -179.62 -0.65 -13.95 16 10 C 0.12 2.53 8.23 -2.97 -0.02 2.51 16 11 C 0.24 5.76 1.40 -90.84 -0.13 5.64 16 12 O -0.57 -14.78 13.48 -35.23 -0.48 -15.25 16 13 C -0.54 -13.53 8.61 -34.44 -0.30 -13.83 16 14 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 15 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 16 N -0.90 -22.95 11.20 55.43 0.62 -22.33 16 17 Si 0.91 19.62 29.54 -169.99 -5.02 14.60 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 C 0.07 1.63 6.41 -2.84 -0.02 1.61 16 22 N -0.40 -5.54 3.12 -120.04 -0.37 -5.91 16 23 C 0.06 0.60 10.71 59.85 0.64 1.24 16 24 C 0.07 0.78 10.91 -16.41 -0.18 0.60 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.16 3.12 5.02 -52.49 -0.26 2.85 16 29 H 0.07 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 31 H 0.39 10.25 6.60 45.56 0.30 10.55 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.09 1.83 8.09 -51.93 -0.42 1.41 16 34 H 0.08 1.72 6.43 -51.93 -0.33 1.38 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 1.55 5.88 -51.93 -0.31 1.25 16 38 H 0.18 1.12 8.00 -52.49 -0.42 0.70 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -31.46 327.51 -6.39 -37.85 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -3.94 Total: 12.63 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.66 Total: 8.42 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.40 Total: -42.19 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.30 Total: -36.25 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.46 -6.39 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331588935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.162 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds