Wall clock time and date at job start Tue Mar 31 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35907 * 116.99829 * 2 1 4 4 C 1.39146 * 120.47498 * 180.02562 * 3 2 1 5 5 C 1.38530 * 118.37522 * 179.73445 * 4 3 2 6 6 C 1.38254 * 119.22132 * 0.48704 * 5 4 3 7 7 C 1.50703 * 119.55731 * 179.77552 * 6 5 4 8 8 C 1.50701 * 109.47064 * 124.72726 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47055 * 136.05788 * 359.63591 * 10 8 7 12 12 C 1.53757 * 87.88929 * 152.95713 * 11 10 8 13 13 O 1.42892 * 114.39933 * 272.67676 * 12 11 10 14 14 C 1.50708 * 114.26588 * 139.78818 * 12 11 10 15 15 H 1.08001 * 119.99835 * 266.47967 * 14 12 11 16 16 C 1.37879 * 119.99889 * 86.47999 * 14 12 11 17 17 N 1.31516 * 119.99620 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 119.99820 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47146 * 60.00248 * 18 16 14 20 20 H 1.48503 * 109.47074 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47194 * 299.99960 * 18 16 14 22 22 C 1.47065 * 136.05284 * 179.97438 * 10 8 7 23 23 N 1.31850 * 120.88485 * 359.50250 * 6 5 4 24 24 C 1.31834 * 121.78189 * 0.24940 * 23 6 5 25 25 H 1.08999 * 109.47284 * 299.99390 * 1 2 3 26 26 H 1.08994 * 109.47273 * 60.00316 * 1 2 3 27 27 H 1.09008 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.80517 * 359.97438 * 4 3 2 29 29 H 1.07996 * 120.38952 * 180.26925 * 5 4 3 30 30 H 1.09002 * 109.47152 * 4.72818 * 7 6 5 31 31 H 1.09001 * 109.46980 * 244.72919 * 7 6 5 32 32 H 1.09004 * 113.47070 * 267.68929 * 11 10 8 33 33 H 1.09003 * 113.47263 * 38.13096 * 11 10 8 34 34 H 0.96700 * 114.00225 * 273.58927 * 13 12 11 35 35 H 0.97003 * 119.99026 * 180.02562 * 17 16 14 36 36 H 1.08997 * 113.46988 * 321.86829 * 22 10 8 37 37 H 1.09002 * 113.46903 * 92.31116 * 22 10 8 38 38 H 1.07998 * 119.65947 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4349 1.2953 -0.0005 5 6 4.0181 2.5519 -0.0062 6 6 3.2078 3.6721 -0.0008 7 6 3.8343 5.0427 -0.0017 8 6 3.3016 5.8378 -1.1658 9 8 2.4925 5.3405 -1.9201 10 7 3.7235 7.1017 -1.3680 11 6 4.6511 8.0278 -0.7014 12 6 4.8602 8.7092 -2.0638 13 8 5.8889 8.1243 -2.8646 14 6 4.9383 10.2129 -1.9987 15 1 4.0486 10.8068 -2.1477 16 6 6.1456 10.8303 -1.7490 17 7 7.2290 10.1070 -1.5680 18 14 6.2425 12.6940 -1.6690 19 1 5.3553 13.1899 -0.5864 20 1 7.6417 13.1053 -1.3890 21 1 5.8077 13.2684 -2.9675 22 6 3.4542 8.1637 -2.3491 23 7 1.8943 3.5573 -0.0002 24 6 1.3002 2.3805 0.0001 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0432 0.4030 -0.0005 29 1 5.0931 2.6552 -0.0111 30 1 4.9164 4.9476 -0.0916 31 1 3.5907 5.5542 0.9295 32 1 4.1687 8.6699 0.0356 33 1 5.5473 7.5418 -0.3155 34 1 6.7735 8.4699 -2.6826 35 1 8.0782 10.5414 -1.3920 36 1 3.3308 7.7934 -3.3668 37 1 2.6560 8.8417 -2.0469 38 1 0.2215 2.3264 0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332431489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:00 Heat of formation + Delta-G solvation = -41.353192 kcal Electronic energy + Delta-G solvation = -22675.831656 eV Core-core repulsion = 19099.623481 eV Total energy + Delta-G solvation = -3576.208175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.75911 -39.49033 -38.38077 -37.11331 -33.96697 -32.44661 -32.30276 -32.17872 -29.19687 -27.96304 -27.01287 -25.14355 -24.99112 -23.42259 -22.18899 -20.11389 -18.36173 -18.16107 -17.42834 -17.12616 -16.25524 -16.07562 -15.93416 -15.25214 -14.95588 -14.79492 -14.31525 -14.22509 -14.08964 -13.49572 -13.22084 -12.97566 -12.74547 -12.36184 -12.20275 -12.05625 -11.93861 -11.72989 -11.54143 -11.38978 -11.04482 -10.98595 -10.48850 -10.25090 -9.76675 -9.58326 -9.37122 -9.10947 -8.76295 -8.42990 -8.31551 -7.77678 -6.39870 -4.49860 1.07793 1.27375 2.98472 3.16450 3.22244 3.24464 3.31288 3.52154 3.89163 4.18769 4.33258 4.56378 4.66420 4.79143 4.83803 4.88479 4.97835 5.18197 5.21330 5.31152 5.46565 5.54455 5.64603 5.70391 5.87782 5.97550 6.06313 6.24418 6.40862 6.45248 6.55220 6.69336 6.71369 7.04434 7.13369 7.63566 7.82057 8.05172 8.52680 8.60584 8.87430 9.21410 9.50313 10.66723 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.046670 B = 0.002907 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.807178 B = 9630.563616 C = 9852.792436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.066 3.934 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.116 3.884 7 C -0.082 4.082 8 C 0.542 3.458 9 O -0.548 6.548 10 N -0.638 5.638 11 C 0.071 3.929 12 C 0.240 3.760 13 O -0.571 6.571 14 C -0.533 4.533 15 H 0.072 0.928 16 C 0.072 3.928 17 N -0.899 5.899 18 Si 0.909 3.091 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.108 3.892 23 N -0.420 5.420 24 C 0.025 3.975 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.393 0.607 35 H 0.274 0.726 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 -14.143 6.685 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.018 3.982 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.023 4.023 7 C -0.122 4.122 8 C 0.330 3.670 9 O -0.427 6.427 10 N -0.372 5.372 11 C -0.052 4.052 12 C 0.198 3.802 13 O -0.384 6.384 14 C -0.571 4.571 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.540 5.540 18 Si 0.736 3.264 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.198 1.198 22 C -0.014 4.014 23 N -0.129 5.129 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.250 0.750 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.381 -14.403 6.115 17.301 hybrid contribution 0.837 0.598 0.436 1.117 sum -6.544 -13.806 6.551 16.623 Atomic orbital electron populations 1.23097 0.78162 1.04101 1.01706 1.86043 1.21548 1.26269 1.88868 1.20077 0.93309 0.85645 0.99124 1.20831 0.91597 0.98638 1.02448 1.21830 1.01438 0.91589 0.99688 1.20559 0.89136 0.94527 0.98078 1.20454 1.01147 0.91259 0.99378 1.19605 0.81081 0.80499 0.85790 1.90660 1.34393 1.69794 1.47813 1.49699 1.45034 1.10482 1.32008 1.24243 0.90962 0.89091 1.00936 1.19577 0.84567 0.90482 0.85584 1.86047 1.21427 1.67637 1.63291 1.21412 0.95469 0.90471 1.49756 0.91014 1.25076 0.95256 0.99618 0.93120 1.69256 0.99982 1.36244 1.48483 0.86366 0.77284 0.83801 0.78938 1.19883 1.21005 1.19847 1.23279 0.99128 0.86134 0.92847 1.67311 1.11606 1.26134 1.07815 1.22864 1.00389 0.87002 1.03138 0.92451 0.92341 0.88072 0.84075 0.83893 0.87540 0.87568 0.90137 0.91773 0.75032 0.91551 0.91739 0.89870 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.49 10.51 -19.45 -0.20 -3.69 16 3 C 0.07 0.84 6.71 -39.07 -0.26 0.57 16 4 C -0.11 -1.31 10.13 -39.14 -0.40 -1.71 16 5 C -0.13 -1.61 9.70 -39.47 -0.38 -1.99 16 6 C 0.12 1.83 5.76 -82.58 -0.48 1.35 16 7 C -0.08 -1.30 5.93 -29.03 -0.17 -1.47 16 8 C 0.54 11.27 8.01 -10.98 -0.09 11.18 16 9 O -0.55 -13.19 16.11 5.56 0.09 -13.10 16 10 N -0.64 -13.61 3.69 -185.07 -0.68 -14.29 16 11 C 0.07 1.49 7.86 -8.38 -0.07 1.43 16 12 C 0.24 5.72 1.58 -91.13 -0.14 5.58 16 13 O -0.57 -14.65 13.54 -35.23 -0.48 -15.13 16 14 C -0.53 -13.23 8.70 -34.44 -0.30 -13.53 16 15 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 16 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 17 N -0.90 -22.43 11.01 55.43 0.61 -21.82 16 18 Si 0.91 19.22 29.54 -169.99 -5.02 14.20 16 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 C 0.11 2.41 8.02 -8.52 -0.07 2.34 16 23 N -0.42 -7.15 9.21 -9.35 -0.09 -7.23 16 24 C 0.03 0.35 10.22 -17.38 -0.18 0.17 16 25 H 0.06 0.35 7.68 -51.93 -0.40 -0.04 16 26 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 27 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.14 1.42 7.94 -52.49 -0.42 1.01 16 30 H 0.11 1.45 7.87 -51.93 -0.41 1.04 16 31 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.39 10.14 6.32 45.56 0.29 10.43 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 36 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 38 H 0.16 1.74 6.32 -52.49 -0.33 1.41 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -31.25 329.53 -6.61 -37.85 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.17 Total: 11.50 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -1.64 Total: 6.76 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.16 Total: -43.35 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.59 Total: -31.93 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.25 -6.61 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332431489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.499 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds