Wall clock time and date at job start Tue Mar 31 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40199 * 120.36695 * 2 1 4 4 C 1.35350 * 119.94952 * 179.97438 * 3 2 1 5 5 N 1.35764 * 120.70376 * 0.02562 * 4 3 2 6 6 C 1.46491 * 119.62858 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46957 * 90.00123 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.47067 * 136.05683 * 359.91428 * 9 7 6 11 11 C 1.53242 * 88.08123 * 207.19809 * 10 9 7 12 12 O 1.42901 * 114.02006 * 87.71390 * 11 10 9 13 13 C 1.50699 * 114.50458 * 220.45440 * 11 10 9 14 14 H 1.07994 * 120.00073 * 93.84649 * 13 11 10 15 15 C 1.37877 * 120.00182 * 273.84087 * 13 11 10 16 16 N 1.31517 * 119.99771 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00199 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46628 * 60.00340 * 17 15 13 19 19 H 1.48494 * 109.47119 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47071 * 300.00670 * 17 15 13 21 21 C 1.47072 * 136.05745 * 180.27198 * 9 7 6 22 22 C 1.34663 * 120.74466 * 0.25731 * 5 4 3 23 23 O 1.22062 * 119.98128 * 179.70002 * 22 5 4 24 24 C 1.36398 * 120.37222 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47374 * 89.99549 * 1 2 3 26 26 H 1.09001 * 109.47036 * 210.00191 * 1 2 3 27 27 H 1.09004 * 109.46886 * 329.99572 * 1 2 3 28 28 H 1.08005 * 120.02836 * 359.96611 * 3 2 1 29 29 H 1.08001 * 119.64846 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47166 * 330.00389 * 6 5 4 31 31 H 1.08994 * 109.47507 * 210.00095 * 6 5 4 32 32 H 1.09000 * 113.46426 * 321.92357 * 10 9 7 33 33 H 1.08998 * 113.47159 * 92.37047 * 10 9 7 34 34 H 0.96703 * 114.00237 * 86.38338 * 12 11 10 35 35 H 0.97003 * 119.99686 * 179.97438 * 16 15 13 36 36 H 1.08991 * 113.47060 * 267.62729 * 21 9 7 37 37 H 1.08997 * 113.46223 * 38.07259 * 21 9 7 38 38 H 1.08001 * 120.34003 * 0.03230 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1998 0.0005 5 7 4.2539 0.0274 0.0005 6 6 5.7187 0.0443 0.0005 7 6 6.2209 0.0500 1.4214 8 8 5.4329 0.0405 2.3432 9 7 7.5460 0.0596 1.6677 10 6 8.7736 0.0653 0.8578 11 6 9.4855 -0.6265 2.0253 12 8 9.3909 -2.0521 2.0018 13 6 10.8822 -0.1265 2.2903 14 1 11.0476 0.6524 3.0198 15 6 11.9490 -0.6635 1.6013 16 7 11.7475 -1.6118 0.7126 17 14 13.6803 -0.0433 1.9292 18 1 14.0247 -0.2685 3.3561 19 1 14.6406 -0.7766 1.0660 20 1 13.7516 1.4086 1.6260 21 6 8.4006 0.0626 2.8646 22 6 3.6017 -1.1507 -0.0052 23 8 4.2312 -2.1964 -0.0106 24 6 2.1966 -1.1768 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6822 2.1487 -0.0006 29 1 4.1103 2.1345 0.0009 30 1 6.0718 0.9384 -0.5133 31 1 6.0923 -0.8414 -0.5133 32 1 8.7066 -0.5546 -0.0363 33 1 9.1521 1.0661 0.6502 34 1 10.0757 -2.4831 1.4722 35 1 12.4980 -1.9894 0.2277 36 1 8.6787 1.0626 3.1969 37 1 8.0170 -0.5595 3.6733 38 1 1.6683 -2.1187 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332497676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:52 Heat of formation + Delta-G solvation = -65.942685 kcal Electronic energy + Delta-G solvation = -23166.788130 eV Core-core repulsion = 19589.513675 eV Total energy + Delta-G solvation = -3577.274456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.55896 -41.20658 -39.19521 -38.14875 -36.25414 -35.94623 -34.14392 -31.89695 -30.85831 -30.04731 -28.11703 -26.94255 -26.50440 -24.68408 -22.79547 -21.98101 -20.20776 -19.38979 -18.59501 -18.58168 -18.20747 -17.21718 -17.04911 -16.84431 -16.56770 -16.00803 -15.93313 -15.21944 -15.08330 -15.05996 -14.58613 -14.26629 -14.14760 -13.86921 -13.57440 -13.41974 -13.36099 -13.05830 -12.92674 -12.80873 -12.74834 -12.47242 -12.23120 -12.20495 -11.55736 -11.18353 -11.10532 -10.74430 -10.59480 -10.27832 -9.68487 -9.02252 -8.28060 -6.46071 -0.14289 0.88760 1.34301 1.41230 1.48998 1.51902 1.59092 1.96677 2.40236 2.63254 2.93594 3.30261 3.57432 3.69903 3.72759 3.83532 4.00024 4.07680 4.13339 4.30491 4.35918 4.40052 4.58260 4.70929 4.77763 4.83597 4.84845 4.89035 4.90230 5.08748 5.20344 5.24155 5.46149 5.65824 5.71649 5.88871 6.03906 6.60197 6.73332 6.89286 6.97620 7.28001 7.46292 8.78057 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.041379 B = 0.003303 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.513448 B = 8474.415558 C = 8658.497149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.035 3.965 3 C -0.225 4.225 4 C 0.135 3.865 5 N -0.483 5.483 6 C 0.085 3.915 7 C 0.518 3.482 8 O -0.590 6.590 9 N -0.632 5.632 10 C 0.085 3.915 11 C 0.214 3.786 12 O -0.592 6.592 13 C -0.551 4.551 14 H 0.079 0.921 15 C 0.031 3.969 16 N -0.919 5.919 17 Si 0.973 3.027 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.262 1.262 21 C 0.108 3.892 22 C 0.496 3.504 23 O -0.617 6.617 24 C -0.291 4.291 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.190 0.810 29 H 0.201 0.799 30 H 0.172 0.828 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.389 0.611 35 H 0.277 0.723 36 H 0.114 0.886 37 H 0.045 0.955 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 11.837 -6.486 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.031 3.969 3 C -0.247 4.247 4 C 0.009 3.991 5 N -0.192 5.192 6 C -0.040 4.040 7 C 0.308 3.692 8 O -0.472 6.472 9 N -0.365 5.365 10 C -0.037 4.037 11 C 0.173 3.827 12 O -0.405 6.405 13 C -0.589 4.589 14 H 0.097 0.903 15 C -0.170 4.170 16 N -0.560 5.560 17 Si 0.798 3.202 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.187 1.187 21 C -0.014 4.014 22 C 0.302 3.698 23 O -0.505 6.505 24 C -0.312 4.312 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.207 0.793 29 H 0.218 0.782 30 H 0.189 0.811 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.129 0.871 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.117 11.170 -5.824 20.455 hybrid contribution 1.629 -0.670 -0.027 1.762 sum -14.487 10.500 -5.851 18.824 Atomic orbital electron populations 1.21039 0.87404 1.04691 1.04519 1.20690 0.98784 0.91822 0.85569 1.21102 0.91954 1.00049 1.11623 1.22754 0.94695 0.89465 0.92157 1.45123 1.07381 1.07967 1.58735 1.21746 0.79485 1.08820 0.93943 1.20766 0.80325 0.76062 0.92059 1.90654 1.55181 1.53741 1.47667 1.49684 1.03511 1.70151 1.13164 1.24087 0.79895 1.02205 0.97554 1.19850 0.92146 0.79376 0.91374 1.86063 1.58421 1.20311 1.75735 1.21610 0.91018 1.22099 1.24127 0.90333 1.25817 1.03500 0.94311 0.93348 1.69335 1.33794 1.27248 1.25601 0.85364 0.77972 0.78883 0.77962 1.20159 1.21053 1.18677 1.23410 0.87437 1.00953 0.89604 1.17726 0.90669 0.82556 0.78816 1.90925 1.70436 1.32539 1.56642 1.21870 0.90872 1.01164 1.17316 0.88123 0.90907 0.88422 0.79301 0.78198 0.81113 0.87102 0.91824 0.87100 0.75472 0.91345 0.86786 0.93666 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.03 71.23 0.71 -0.57 16 2 C 0.04 0.68 5.89 -19.82 -0.12 0.57 16 3 C -0.23 -3.51 9.71 22.08 0.21 -3.29 16 4 C 0.13 2.61 10.28 83.42 0.86 3.46 16 5 N -0.48 -14.50 2.07 -655.08 -1.36 -15.86 16 6 C 0.09 2.61 5.65 85.64 0.48 3.10 16 7 C 0.52 20.99 8.14 87.66 0.71 21.71 16 8 O -0.59 -28.12 17.21 -3.04 -0.05 -28.18 16 9 N -0.63 -26.12 3.69 -859.21 -3.17 -29.30 16 10 C 0.08 3.42 7.83 83.10 0.65 4.07 16 11 C 0.21 10.23 1.57 -11.29 -0.02 10.21 16 12 O -0.59 -32.25 13.53 -148.98 -2.02 -34.27 16 13 C -0.55 -26.72 8.70 25.60 0.22 -26.50 16 14 H 0.08 3.62 7.81 -2.91 -0.02 3.60 16 15 C 0.03 1.48 5.39 84.65 0.46 1.93 16 16 N -0.92 -46.23 11.01 21.45 0.24 -45.99 16 17 Si 0.97 38.39 29.54 68.60 2.03 40.42 16 18 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.29 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 21 C 0.11 4.72 8.03 83.18 0.67 5.38 16 22 C 0.50 18.54 7.40 84.82 0.63 19.17 16 23 O -0.62 -29.63 16.63 -5.52 -0.09 -29.72 16 24 C -0.29 -8.43 9.65 22.40 0.22 -8.21 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 27 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 28 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.20 2.08 8.04 -2.91 -0.02 2.06 16 30 H 0.17 3.24 8.01 -2.38 -0.02 3.23 16 31 H 0.11 3.86 7.38 -2.39 -0.02 3.84 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.11 3.89 8.10 -2.39 -0.02 3.87 16 34 H 0.39 21.38 6.33 -74.06 -0.47 20.91 16 35 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 36 H 0.11 4.28 8.10 -2.39 -0.02 4.26 16 37 H 0.04 2.12 8.14 -2.39 -0.02 2.11 16 38 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -77.38 332.09 1.88 -75.50 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.62 Total: 36.36 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 5.69 Total: 31.04 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -4.29 Total: -91.15 kcal Atomic # 8 Polarization: -90.01 SS G_CDS: -2.16 Total: -92.17 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -77.38 1.88 -75.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332497676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.554 kcal (2) G-P(sol) polarization free energy of solvation -77.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds