Wall clock time and date at job start Tue Mar 31 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37106 * 119.99592 * 2 1 4 4 H 1.08002 * 119.99770 * 201.70770 * 3 2 1 5 5 C 1.38941 * 119.99963 * 21.71076 * 3 2 1 6 6 N 1.31407 * 120.00462 * 11.33429 * 5 3 2 7 7 Si 1.86811 * 119.99832 * 191.33903 * 5 3 2 8 8 H 1.48494 * 109.47094 * 85.06746 * 7 5 3 9 9 H 1.48501 * 109.46904 * 205.07203 * 7 5 3 10 10 H 1.48501 * 109.46627 * 325.06908 * 7 5 3 11 11 C 1.34772 * 120.00574 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00484 * 180.02562 * 11 2 1 13 13 C 1.50698 * 119.99881 * 359.97438 * 11 2 1 14 14 N 1.46500 * 109.47252 * 179.97438 * 13 11 2 15 15 C 1.34698 * 123.06590 * 90.00675 * 14 13 11 16 16 O 1.21226 * 126.39641 * 11.91830 * 15 14 13 17 17 C 1.53790 * 107.21737 * 191.90371 * 15 14 13 18 18 H 1.09002 * 113.73197 * 212.29523 * 17 15 14 19 19 C 1.53077 * 104.79420 * 87.25728 * 17 15 14 20 20 C 1.48936 * 113.36879 * 214.76703 * 19 17 15 21 21 C 1.28902 * 124.81777 * 17.41034 * 20 19 17 22 22 C 1.49605 * 123.47627 * 357.81813 * 21 20 19 23 23 C 1.49328 * 113.58995 * 11.10298 * 22 21 20 24 24 H 1.08999 * 107.41879 * 205.20576 * 23 22 21 25 25 C 1.35183 * 123.07203 * 270.00006 * 14 13 11 26 26 O 1.21222 * 126.85479 * 9.74290 * 25 14 13 27 27 H 1.08999 * 109.47493 * 272.17000 * 1 2 3 28 28 H 1.08996 * 109.47666 * 32.17817 * 1 2 3 29 29 H 1.09006 * 109.46628 * 152.17455 * 1 2 3 30 30 H 0.97003 * 119.99945 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.46905 * 60.00378 * 13 11 2 32 32 H 1.08993 * 109.47681 * 300.00406 * 13 11 2 33 33 H 1.09000 * 108.70193 * 335.77183 * 19 17 15 34 34 H 1.08999 * 108.70507 * 93.88857 * 19 17 15 35 35 H 1.07997 * 117.55601 * 197.45184 * 20 19 17 36 36 H 1.07999 * 118.16610 * 177.76572 * 21 20 19 37 37 H 1.09005 * 108.63258 * 250.09005 * 22 21 20 38 38 H 1.09001 * 108.64020 * 132.13422 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1730 1.2206 -0.3460 5 6 1.5295 2.3480 0.4451 6 7 0.3755 2.2777 1.0698 7 14 2.3352 4.0083 0.1554 8 1 1.9735 4.5048 -1.1965 9 1 1.8624 4.9734 1.1802 10 1 3.8102 3.8663 0.2524 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3855 -2.4722 0.0017 14 7 2.3376 -3.5857 0.0014 15 6 2.8160 -4.1439 1.1302 16 8 2.3987 -3.9646 2.2541 17 6 3.9902 -5.0514 0.7269 18 1 4.1026 -5.9310 1.3608 19 6 5.2126 -4.1300 0.7219 20 6 6.2056 -4.4716 -0.3343 21 6 5.9613 -5.2081 -1.3636 22 6 4.6407 -5.8653 -1.6133 23 6 3.5538 -5.3853 -0.7089 24 1 2.8117 -6.1807 -0.6399 25 6 2.8161 -4.1469 -1.1315 26 8 2.6772 -3.7334 -2.2625 27 1 -0.3634 0.0389 1.0269 28 1 -0.3634 0.8697 -0.5472 29 1 -0.3633 -0.9089 -0.4797 30 1 -0.0580 3.0881 1.3802 31 1 0.7586 -2.5306 -0.8881 32 1 0.7592 -2.5295 0.8918 33 1 4.8767 -3.1046 0.5673 34 1 5.7025 -4.1938 1.6935 35 1 7.2038 -4.0732 -0.2291 36 1 6.7527 -5.3570 -2.0832 37 1 4.7561 -6.9409 -1.4791 38 1 4.3458 -5.6735 -2.6450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339560165.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:31:22 Heat of formation + Delta-G solvation = -60.534279 kcal Electronic energy + Delta-G solvation = -24240.080287 eV Core-core repulsion = 20663.040358 eV Total energy + Delta-G solvation = -3577.039929 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16321 -38.53214 -38.32122 -37.32438 -35.44561 -34.62336 -32.22346 -31.59050 -31.27837 -28.10945 -26.18151 -24.92731 -24.50458 -23.56022 -21.82538 -20.24089 -18.75422 -18.00710 -17.09559 -16.83481 -16.57978 -16.29764 -15.84134 -15.33284 -14.87323 -14.54796 -14.26574 -14.20015 -14.11187 -13.79295 -13.35055 -13.24080 -12.86162 -12.55816 -12.40567 -12.25413 -11.91947 -11.59151 -11.31311 -11.28314 -11.21420 -10.90815 -10.61282 -10.38879 -10.30796 -10.07369 -9.87505 -9.64857 -9.06538 -9.00696 -8.37824 -7.75710 -6.34826 -3.91529 1.73405 2.29784 2.55108 2.92666 3.15064 3.23799 3.29196 3.74392 3.88479 4.10316 4.21749 4.26407 4.60989 4.82669 4.97005 5.02599 5.07301 5.12070 5.22966 5.33584 5.50857 5.54314 5.59159 5.70164 5.71928 5.75222 5.83915 6.02132 6.13753 6.25316 6.57342 6.82810 6.91381 7.01749 7.17937 7.49180 7.53382 7.94224 8.08134 8.42532 9.12465 9.34994 9.87826 10.68406 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023387 B = 0.004715 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.953832 B = 5937.045647 C = 6230.573496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.439 5.439 3 C -0.305 4.305 4 H 0.100 0.900 5 C 0.031 3.969 6 N -0.882 5.882 7 Si 0.929 3.071 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.432 3.568 12 O -0.582 6.582 13 C 0.087 3.913 14 N -0.561 5.561 15 C 0.532 3.468 16 O -0.476 6.476 17 C -0.099 4.099 18 H 0.131 0.869 19 C -0.097 4.097 20 C -0.138 4.138 21 C -0.162 4.162 22 C -0.069 4.069 23 C -0.124 4.124 24 H 0.111 0.889 25 C 0.544 3.456 26 O -0.467 6.467 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.269 0.731 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.843 -16.147 -2.639 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.157 5.157 3 C -0.433 4.433 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.521 5.521 7 Si 0.756 3.244 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.218 3.782 12 O -0.467 6.467 13 C -0.038 4.038 14 N -0.304 5.304 15 C 0.321 3.679 16 O -0.346 6.346 17 C -0.121 4.121 18 H 0.149 0.851 19 C -0.134 4.134 20 C -0.156 4.156 21 C -0.180 4.180 22 C -0.106 4.106 23 C -0.145 4.145 24 H 0.129 0.871 25 C 0.333 3.667 26 O -0.337 6.337 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.927 -15.616 -2.558 16.304 hybrid contribution -0.001 1.146 -0.014 1.146 sum 3.926 -14.470 -2.571 15.212 Atomic orbital electron populations 1.21590 0.80896 0.99014 1.01995 1.43539 1.05635 1.04567 1.61994 1.19666 0.99201 0.83448 1.40950 0.88274 1.25354 0.96478 1.00122 0.95263 1.69995 1.16733 1.29330 1.36050 0.85891 0.79606 0.80911 0.77997 1.20229 1.20870 1.19412 1.20009 0.88370 0.84732 0.85050 1.90491 1.13547 1.86664 1.56015 1.21626 0.91288 0.85763 1.05084 1.46806 1.42616 1.32012 1.08937 1.21556 0.82638 0.80091 0.83639 1.90741 1.61347 1.61799 1.20736 1.22632 0.94453 0.99231 0.95785 0.85138 1.20259 0.93060 1.00573 0.99521 1.21507 0.99339 0.98790 0.95921 1.21675 0.97772 1.00311 0.98242 1.19298 0.91399 1.00073 0.99859 1.21028 0.99907 0.97477 0.96078 0.87089 1.20477 0.77761 0.84589 0.83916 1.90735 1.56109 1.66675 1.20186 0.92047 0.90760 0.95664 0.92128 0.87843 0.87274 0.87952 0.89642 0.87325 0.87082 0.89517 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 8.52 59.84 0.51 2.95 16 2 N -0.44 -11.45 3.02 -122.20 -0.37 -11.82 16 3 C -0.30 -8.63 9.31 -14.93 -0.14 -8.77 16 4 H 0.10 2.95 7.39 -52.49 -0.39 2.56 16 5 C 0.03 0.83 5.12 -17.47 -0.09 0.74 16 6 N -0.88 -23.57 10.56 55.49 0.59 -22.98 16 7 Si 0.93 21.01 29.57 -169.99 -5.03 15.98 16 8 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 11 C 0.43 10.79 7.70 -10.99 -0.08 10.71 16 12 O -0.58 -16.21 15.32 5.55 0.09 -16.13 16 13 C 0.09 1.69 4.68 -5.19 -0.02 1.67 16 14 N -0.56 -9.94 2.03 -115.46 -0.23 -10.18 16 15 C 0.53 8.87 6.72 -9.46 -0.06 8.80 16 16 O -0.48 -9.23 17.58 5.60 0.10 -9.13 16 17 C -0.10 -1.21 4.07 -89.78 -0.37 -1.58 16 18 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.10 -1.33 5.18 -28.68 -0.15 -1.48 16 20 C -0.14 -1.66 9.75 -36.31 -0.35 -2.01 16 21 C -0.16 -1.75 9.88 -35.99 -0.36 -2.10 16 22 C -0.07 -0.68 5.67 -30.22 -0.17 -0.85 16 23 C -0.12 -1.42 2.39 -93.43 -0.22 -1.64 16 24 H 0.11 0.93 8.11 -51.93 -0.42 0.51 16 25 C 0.54 8.98 7.43 -11.04 -0.08 8.90 16 26 O -0.47 -9.09 17.39 5.61 0.10 -9.00 16 27 H 0.06 1.42 7.56 -51.93 -0.39 1.03 16 28 H 0.07 1.74 7.00 -51.93 -0.36 1.38 16 29 H 0.02 0.46 6.36 -51.93 -0.33 0.13 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.10 1.80 7.28 -51.93 -0.38 1.43 16 32 H 0.11 1.99 7.79 -51.93 -0.40 1.58 16 33 H 0.10 1.89 6.62 -51.93 -0.34 1.55 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.11 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.92 7.79 -51.93 -0.40 0.52 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -34.27 317.96 -6.24 -40.51 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.68 Total: 2.62 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: -1.59 Total: 15.34 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.02 Total: -44.98 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: 0.28 Total: -34.26 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.27 -6.24 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339560165.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.028 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds