Wall clock time and date at job start Tue Mar 31 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99804 * 2 1 4 4 H 1.07996 * 119.99739 * 204.88923 * 3 2 1 5 5 C 1.38815 * 120.00113 * 24.88967 * 3 2 1 6 6 N 1.31625 * 119.99700 * 5.59919 * 5 3 2 7 7 Si 1.86798 * 120.00155 * 185.59431 * 5 3 2 8 8 H 1.48499 * 109.46650 * 60.00529 * 7 5 3 9 9 H 1.48496 * 109.47141 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47202 * 300.00639 * 7 5 3 11 11 C 1.46494 * 120.00073 * 180.02562 * 2 1 3 12 12 C 1.50704 * 109.47353 * 89.99916 * 11 2 1 13 13 O 1.21294 * 120.00054 * 0.02562 * 12 11 2 14 14 N 1.34778 * 119.99947 * 179.97438 * 12 11 2 15 15 C 1.40104 * 119.99819 * 184.33101 * 14 12 11 16 16 C 1.38845 * 120.01804 * 324.81698 * 15 14 12 17 17 C 1.38127 * 120.03810 * 180.09632 * 16 15 14 18 18 C 1.38713 * 120.16274 * 359.94451 * 17 16 15 19 19 C 1.38994 * 119.92731 * 359.96243 * 18 17 16 20 20 C 1.38640 * 119.89058 * 0.11273 * 19 18 17 21 21 O 1.36120 * 120.77868 * 180.39177 * 19 18 17 22 22 C 1.43170 * 116.70286 * 342.55631 * 21 19 18 23 23 C 1.53468 * 108.23905 * 46.31742 * 22 21 19 24 24 O 1.36194 * 119.32057 * 179.80193 * 18 17 16 25 25 H 1.09000 * 109.47129 * 275.01405 * 1 2 3 26 26 H 1.08997 * 109.47206 * 35.02163 * 1 2 3 27 27 H 1.09003 * 109.47182 * 155.01550 * 1 2 3 28 28 H 0.97000 * 119.99818 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.47513 * 329.99907 * 11 2 1 30 30 H 1.09005 * 109.47349 * 209.99745 * 11 2 1 31 31 H 0.96996 * 120.00343 * 4.33242 * 14 12 11 32 32 H 1.08005 * 119.97986 * 0.11856 * 16 15 14 33 33 H 1.08001 * 119.91687 * 179.97438 * 17 16 15 34 34 H 1.07995 * 119.99397 * 180.17689 * 20 19 18 35 35 H 1.08993 * 109.70928 * 286.63077 * 22 21 19 36 36 H 1.09005 * 109.71233 * 166.00363 * 22 21 19 37 37 H 1.08997 * 109.70809 * 180.57218 * 23 22 21 38 38 H 1.09001 * 109.74166 * 59.97169 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1544 1.2294 -0.3936 5 6 1.5523 2.3323 0.5060 6 7 0.3728 2.2587 1.0854 7 14 2.4224 3.9792 0.3645 8 1 2.6514 4.2965 -1.0680 9 1 1.5809 5.0378 0.9780 10 1 3.7265 3.9123 1.0714 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7031 -1.4216 13 8 2.0550 -1.0199 -2.3433 14 7 3.1117 -2.8503 -1.6683 15 6 3.4249 -3.2089 -2.9860 16 6 2.5459 -2.9035 -4.0165 17 6 2.8534 -3.2586 -5.3155 18 6 4.0403 -3.9198 -5.5950 19 6 4.9230 -4.2251 -4.5656 20 6 4.6133 -3.8699 -3.2618 21 8 6.0961 -4.8664 -4.8213 22 6 6.2009 -5.5380 -6.0814 23 6 5.6873 -4.5911 -7.1745 24 8 4.3243 -4.2654 -6.8814 25 1 -0.3633 0.0898 1.0237 26 1 -0.3633 0.8416 -0.5897 27 1 -0.3634 -0.9315 -0.4341 28 1 -0.0445 3.0597 1.4393 29 1 1.6085 -2.0286 0.5129 30 1 3.1500 -1.1386 0.5133 31 1 3.3720 -3.4277 -0.9337 32 1 1.6215 -2.3876 -3.8024 33 1 2.1681 -3.0204 -6.1156 34 1 5.2992 -4.1038 -2.4611 35 1 5.5959 -6.4444 -6.0662 36 1 7.2425 -5.7937 -6.2762 37 1 5.7470 -5.0834 -8.1451 38 1 6.2881 -3.6817 -7.1860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340635219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:27 Heat of formation + Delta-G solvation = -41.999488 kcal Electronic energy + Delta-G solvation = -22900.731054 eV Core-core repulsion = 19324.494854 eV Total energy + Delta-G solvation = -3576.236201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30818 -39.68176 -37.37188 -37.31454 -35.14311 -34.01531 -31.37877 -30.98925 -30.21388 -28.34587 -26.79027 -25.78967 -24.78614 -22.85781 -22.14482 -20.84068 -19.79798 -18.81299 -17.72350 -17.25786 -16.87408 -16.51312 -15.83249 -15.47071 -15.05830 -14.75070 -14.61824 -14.48808 -13.91943 -13.85662 -13.70244 -13.34139 -13.18387 -12.85672 -12.56356 -11.96836 -11.73232 -11.56125 -11.25750 -11.14704 -10.83841 -10.70747 -10.61815 -10.36759 -10.02557 -9.91423 -9.62881 -9.21126 -8.53734 -8.48664 -7.61081 -6.78409 -5.72706 -3.21923 1.28779 1.36723 2.83720 3.04185 3.26656 3.40767 3.46049 3.48630 3.56818 3.83929 4.03955 4.51230 4.55479 4.58784 4.65451 4.98527 5.16841 5.19514 5.32192 5.37080 5.45383 5.53536 5.70354 5.74549 5.98873 6.09246 6.13965 6.24406 6.44445 6.51473 6.78293 6.81580 7.02048 7.37748 7.45546 7.73253 7.81900 7.83973 8.37632 8.78989 9.22125 9.81325 10.28749 11.32105 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028569 B = 0.003231 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.837045 B = 8663.882081 C = 8887.406494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.574 5.574 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.007 3.993 6 N -0.909 5.909 7 Si 0.910 3.090 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.282 1.282 11 C 0.137 3.863 12 C 0.473 3.527 13 O -0.501 6.501 14 N -0.686 5.686 15 C 0.167 3.833 16 C -0.116 4.116 17 C -0.093 4.093 18 C 0.022 3.978 19 C 0.066 3.934 20 C -0.150 4.150 21 O -0.309 6.309 22 C 0.022 3.978 23 C 0.021 3.979 24 O -0.310 6.310 25 H 0.035 0.965 26 H 0.047 0.953 27 H -0.005 1.005 28 H 0.254 0.746 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.514 -17.910 -11.248 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.293 5.293 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.192 4.192 6 N -0.554 5.554 7 Si 0.740 3.260 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.208 1.208 11 C 0.004 3.996 12 C 0.258 3.742 13 O -0.372 6.372 14 N -0.334 5.334 15 C 0.071 3.929 16 C -0.137 4.137 17 C -0.112 4.112 18 C -0.023 4.023 19 C 0.021 3.979 20 C -0.172 4.172 21 O -0.223 6.223 22 C -0.054 4.054 23 C -0.055 4.055 24 O -0.225 6.225 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.013 0.987 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.242 0.758 32 H 0.167 0.833 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.064 -17.144 -11.768 22.684 hybrid contribution 0.851 0.518 -0.076 0.999 sum 9.915 -16.626 -11.845 22.695 Atomic orbital electron populations 1.20882 0.81829 0.95807 0.99379 1.43601 1.02122 0.99702 1.83909 1.19113 0.99039 0.86155 1.34051 0.91633 1.25059 0.97220 0.98708 0.98175 1.70049 1.15983 1.27839 1.41488 0.86248 0.78688 0.83212 0.77859 1.20938 1.21526 1.20837 1.20687 0.98779 0.90766 0.89371 1.24060 0.75777 0.78340 0.95987 1.90635 1.47624 1.52599 1.46390 1.44214 1.59338 1.24357 1.05489 1.17522 0.92264 0.96931 0.86171 1.21175 1.00806 1.00971 0.90726 1.20340 0.95542 0.98055 0.97298 1.18816 0.97384 1.03302 0.82768 1.18467 0.87515 0.98915 0.93032 1.20038 0.96567 1.06425 0.94148 1.86290 1.32736 1.66266 1.37024 1.23585 1.04082 0.94879 0.82838 1.23566 0.82507 0.99776 0.99683 1.86308 1.27353 1.84184 1.24607 0.94674 0.93424 0.98693 0.93592 0.90947 0.89887 0.75832 0.83254 0.84692 0.84668 0.90632 0.86327 0.86384 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.19 8.95 59.85 0.54 4.72 16 2 N -0.57 -14.65 2.41 -182.50 -0.44 -15.09 16 3 C -0.25 -7.17 9.66 -15.06 -0.15 -7.32 16 4 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 5 C 0.01 0.19 5.24 -17.43 -0.09 0.09 16 6 N -0.91 -26.63 10.45 55.49 0.58 -26.05 16 7 Si 0.91 22.41 29.56 -169.99 -5.02 17.38 16 8 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.14 2.67 6.13 -5.20 -0.03 2.64 16 12 C 0.47 9.03 7.74 -10.98 -0.09 8.94 16 13 O -0.50 -11.79 13.88 5.55 0.08 -11.71 16 14 N -0.69 -10.02 5.34 -9.85 -0.05 -10.07 16 15 C 0.17 2.55 6.30 -83.66 -0.53 2.02 16 16 C -0.12 -1.88 8.69 -39.40 -0.34 -2.22 16 17 C -0.09 -1.36 9.95 -39.45 -0.39 -1.75 16 18 C 0.02 0.31 6.50 -39.13 -0.25 0.06 16 19 C 0.07 0.91 6.49 -39.15 -0.25 0.66 16 20 C -0.15 -2.06 9.88 -39.24 -0.39 -2.45 16 21 O -0.31 -3.73 10.42 -32.91 -0.34 -4.07 16 22 C 0.02 0.17 7.26 37.40 0.27 0.44 16 23 C 0.02 0.17 7.26 37.40 0.27 0.44 16 24 O -0.31 -3.86 10.42 -33.14 -0.35 -4.21 16 25 H 0.03 0.92 7.35 -51.93 -0.38 0.54 16 26 H 0.05 1.33 7.26 -51.93 -0.38 0.95 16 27 H -0.01 -0.12 8.03 -51.93 -0.42 -0.54 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 30 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 31 H 0.41 4.32 8.82 -40.82 -0.36 3.96 16 32 H 0.15 2.68 6.23 -52.48 -0.33 2.35 16 33 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -34.95 322.48 -6.90 -41.85 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.78 Total: 0.82 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.43 Total: 6.29 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.09 Total: -51.21 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.61 Total: -19.99 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.95 -6.90 -41.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340635219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.146 kcal (2) G-P(sol) polarization free energy of solvation -34.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds