Wall clock time and date at job start Tue Mar 31 2020 03:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99804 * 2 1 4 4 H 1.07996 * 119.99739 * 204.88923 * 3 2 1 5 5 C 1.38815 * 120.00113 * 24.88967 * 3 2 1 6 6 N 1.31625 * 119.99700 * 5.59919 * 5 3 2 7 7 Si 1.86798 * 120.00155 * 185.59431 * 5 3 2 8 8 H 1.48499 * 109.46650 * 60.00529 * 7 5 3 9 9 H 1.48496 * 109.47141 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47202 * 300.00639 * 7 5 3 11 11 C 1.46494 * 120.00073 * 180.02562 * 2 1 3 12 12 C 1.50704 * 109.47353 * 89.99916 * 11 2 1 13 13 O 1.21294 * 120.00054 * 0.02562 * 12 11 2 14 14 N 1.34778 * 119.99947 * 179.97438 * 12 11 2 15 15 C 1.40104 * 119.99819 * 184.33101 * 14 12 11 16 16 C 1.38845 * 120.01804 * 324.81698 * 15 14 12 17 17 C 1.38127 * 120.03810 * 180.09632 * 16 15 14 18 18 C 1.38713 * 120.16274 * 359.94451 * 17 16 15 19 19 C 1.38994 * 119.92731 * 359.96243 * 18 17 16 20 20 C 1.38640 * 119.89058 * 0.11273 * 19 18 17 21 21 O 1.36120 * 120.77868 * 180.39177 * 19 18 17 22 22 C 1.43170 * 116.70286 * 342.55631 * 21 19 18 23 23 C 1.53468 * 108.23905 * 46.31742 * 22 21 19 24 24 O 1.36194 * 119.32057 * 179.80193 * 18 17 16 25 25 H 1.09000 * 109.47129 * 275.01405 * 1 2 3 26 26 H 1.08997 * 109.47206 * 35.02163 * 1 2 3 27 27 H 1.09003 * 109.47182 * 155.01550 * 1 2 3 28 28 H 0.97000 * 119.99818 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.47513 * 329.99907 * 11 2 1 30 30 H 1.09005 * 109.47349 * 209.99745 * 11 2 1 31 31 H 0.96996 * 120.00343 * 4.33242 * 14 12 11 32 32 H 1.08005 * 119.97986 * 0.11856 * 16 15 14 33 33 H 1.08001 * 119.91687 * 179.97438 * 17 16 15 34 34 H 1.07995 * 119.99397 * 180.17689 * 20 19 18 35 35 H 1.08993 * 109.70928 * 286.63077 * 22 21 19 36 36 H 1.09005 * 109.71233 * 166.00363 * 22 21 19 37 37 H 1.08997 * 109.70809 * 180.57218 * 23 22 21 38 38 H 1.09001 * 109.74166 * 59.97169 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1544 1.2294 -0.3936 5 6 1.5523 2.3323 0.5060 6 7 0.3728 2.2587 1.0854 7 14 2.4224 3.9792 0.3645 8 1 2.6514 4.2965 -1.0680 9 1 1.5809 5.0378 0.9780 10 1 3.7265 3.9123 1.0714 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7031 -1.4216 13 8 2.0550 -1.0199 -2.3433 14 7 3.1117 -2.8503 -1.6683 15 6 3.4249 -3.2089 -2.9860 16 6 2.5459 -2.9035 -4.0165 17 6 2.8534 -3.2586 -5.3155 18 6 4.0403 -3.9198 -5.5950 19 6 4.9230 -4.2251 -4.5656 20 6 4.6133 -3.8699 -3.2618 21 8 6.0961 -4.8664 -4.8213 22 6 6.2009 -5.5380 -6.0814 23 6 5.6873 -4.5911 -7.1745 24 8 4.3243 -4.2654 -6.8814 25 1 -0.3633 0.0898 1.0237 26 1 -0.3633 0.8416 -0.5897 27 1 -0.3634 -0.9315 -0.4341 28 1 -0.0445 3.0597 1.4393 29 1 1.6085 -2.0286 0.5129 30 1 3.1500 -1.1386 0.5133 31 1 3.3720 -3.4277 -0.9337 32 1 1.6215 -2.3876 -3.8024 33 1 2.1681 -3.0204 -6.1156 34 1 5.2992 -4.1038 -2.4611 35 1 5.5959 -6.4444 -6.0662 36 1 7.2425 -5.7937 -6.2762 37 1 5.7470 -5.0834 -8.1451 38 1 6.2881 -3.6817 -7.1860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340635219.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:26 Heat of formation + Delta-G solvation = -66.313567 kcal Electronic energy + Delta-G solvation = -22901.785392 eV Core-core repulsion = 19324.494854 eV Total energy + Delta-G solvation = -3577.290538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27084 -41.03362 -38.63005 -38.22340 -37.00685 -35.35091 -33.33019 -31.94381 -31.30816 -29.60214 -28.27867 -27.82980 -25.72783 -24.07709 -23.69016 -22.15685 -21.10969 -19.80413 -18.90660 -18.66330 -18.30721 -17.83887 -17.13177 -16.63663 -16.51777 -16.00980 -15.89222 -15.44401 -15.37500 -15.08774 -14.99187 -14.89361 -14.60072 -14.22214 -13.71674 -13.64969 -13.11175 -12.93147 -12.79653 -12.61914 -12.51665 -12.27315 -12.03963 -11.97505 -11.91784 -11.50358 -11.00962 -10.73414 -10.54725 -9.58106 -8.83101 -8.72135 -7.84860 -5.36059 0.16084 0.25428 1.44685 1.48664 1.54691 1.71966 1.96978 2.13012 2.43040 2.54102 2.70166 3.30310 3.31180 3.67088 3.68577 3.96080 3.99086 4.07372 4.19263 4.33005 4.37408 4.54342 4.59779 4.61000 4.69672 4.74433 4.83231 4.89027 5.05955 5.27180 5.34753 5.37641 5.60656 5.71282 5.81675 5.88771 6.28627 6.39840 6.60448 7.12262 7.37418 7.81058 8.22869 9.18204 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.028569 B = 0.003231 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.837045 B = 8663.882081 C = 8887.406494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.596 5.596 3 C -0.263 4.263 4 H 0.061 0.939 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.970 3.030 8 H -0.288 1.288 9 H -0.289 1.289 10 H -0.269 1.269 11 C 0.134 3.866 12 C 0.480 3.520 13 O -0.553 6.553 14 N -0.663 5.663 15 C 0.150 3.850 16 C -0.134 4.134 17 C -0.103 4.103 18 C 0.023 3.977 19 C 0.064 3.936 20 C -0.143 4.143 21 O -0.318 6.318 22 C 0.016 3.984 23 C 0.012 3.988 24 O -0.323 6.323 25 H 0.020 0.980 26 H 0.009 0.991 27 H 0.021 0.979 28 H 0.250 0.750 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.428 0.572 32 H 0.125 0.875 33 H 0.143 0.857 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.968 -19.864 -11.923 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.316 5.316 3 C -0.393 4.393 4 H 0.079 0.921 5 C -0.243 4.243 6 N -0.582 5.582 7 Si 0.798 3.202 8 H -0.215 1.215 9 H -0.215 1.215 10 H -0.194 1.194 11 C 0.003 3.997 12 C 0.266 3.734 13 O -0.428 6.428 14 N -0.312 5.312 15 C 0.054 3.946 16 C -0.155 4.155 17 C -0.122 4.122 18 C -0.023 4.023 19 C 0.018 3.982 20 C -0.164 4.164 21 O -0.233 6.233 22 C -0.059 4.059 23 C -0.063 4.063 24 O -0.238 6.238 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.267 0.733 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.102 0.898 36 H 0.174 0.826 37 H 0.173 0.827 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.582 -19.194 -12.444 25.640 hybrid contribution 0.216 0.917 -0.048 0.943 sum 11.799 -18.277 -12.492 25.086 Atomic orbital electron populations 1.20571 0.82454 0.95452 0.97845 1.43761 1.02201 1.01103 1.84579 1.19352 0.98980 0.87702 1.33253 0.92112 1.25802 0.98076 1.01853 0.98535 1.70197 1.17153 1.28217 1.42603 0.85308 0.78169 0.79375 0.77355 1.21485 1.21462 1.19386 1.20974 0.99654 0.89240 0.89820 1.23583 0.75706 0.79006 0.95068 1.90636 1.50057 1.54584 1.47537 1.43722 1.57911 1.23228 1.06352 1.17559 0.93097 0.98152 0.85781 1.21043 1.00555 1.01904 0.91969 1.20420 0.96362 0.98422 0.96979 1.18884 0.97016 1.02546 0.83813 1.18574 0.87975 0.98681 0.92924 1.20195 0.96012 1.05213 0.95021 1.86276 1.31561 1.66193 1.39251 1.23986 1.06616 0.94456 0.80829 1.23973 0.80381 1.00314 1.01632 1.86290 1.30038 1.83952 1.23563 0.96181 0.97202 0.96077 0.94069 0.87378 0.88101 0.73321 0.85748 0.83913 0.82374 0.89803 0.82619 0.82701 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.37 8.95 127.77 1.14 10.52 16 2 N -0.60 -30.52 2.41 -731.31 -1.76 -32.29 16 3 C -0.26 -14.96 9.66 84.03 0.81 -14.15 16 4 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 5 C -0.05 -2.74 5.24 84.86 0.44 -2.29 16 6 N -0.94 -56.02 10.45 21.65 0.23 -55.80 16 7 Si 0.97 46.58 29.56 68.60 2.03 48.61 16 8 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 9 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 C 0.13 5.04 6.13 85.64 0.52 5.56 16 12 C 0.48 18.04 7.74 87.66 0.68 18.72 16 13 O -0.55 -26.54 13.88 -3.07 -0.04 -26.58 16 14 N -0.66 -18.41 5.34 -303.46 -1.62 -20.03 16 15 C 0.15 4.44 6.30 38.09 0.24 4.68 16 16 C -0.13 -4.42 8.69 22.39 0.19 -4.22 16 17 C -0.10 -3.01 9.95 22.36 0.22 -2.78 16 18 C 0.02 0.62 6.50 22.56 0.15 0.76 16 19 C 0.06 1.65 6.49 22.55 0.15 1.80 16 20 C -0.14 -3.65 9.88 22.49 0.22 -3.42 16 21 O -0.32 -6.75 10.42 -82.69 -0.86 -7.61 16 22 C 0.02 0.19 7.26 72.14 0.52 0.71 16 23 C 0.01 0.16 7.26 72.14 0.52 0.68 16 24 O -0.32 -7.46 10.42 -83.53 -0.87 -8.33 16 25 H 0.02 1.08 7.35 -2.39 -0.02 1.06 16 26 H 0.01 0.54 7.26 -2.39 -0.02 0.52 16 27 H 0.02 0.94 8.03 -2.39 -0.02 0.92 16 28 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.11 3.27 8.07 -2.39 -0.02 3.25 16 30 H 0.10 3.43 8.04 -2.38 -0.02 3.41 16 31 H 0.43 7.99 8.82 -92.71 -0.82 7.17 16 32 H 0.12 4.72 6.23 -2.91 -0.02 4.70 16 33 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.16 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -77.77 322.48 3.19 -74.58 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.27 Total: 10.90 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.82 Total: 16.55 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -3.16 Total: -108.11 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -1.77 Total: -42.53 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.77 3.19 -74.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340635219.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.266 kcal (2) G-P(sol) polarization free energy of solvation -77.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds