Wall clock time and date at job start Tue Mar 31 2020 02:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33653 * 125.79496 * 2 1 4 4 C 1.34221 * 110.90138 * 180.28719 * 3 2 1 5 5 C 1.34175 * 109.12623 * 359.73033 * 4 3 2 6 6 C 1.36412 * 125.80186 * 179.81823 * 2 1 3 7 7 C 1.47370 * 127.19442 * 359.97438 * 6 2 1 8 8 O 1.21619 * 120.00040 * 359.70662 * 7 6 2 9 9 N 1.34777 * 120.00268 * 179.71254 * 7 6 2 10 10 C 1.46501 * 120.00491 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47292 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00223 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99769 * 180.02562 * 11 10 9 14 14 C 1.37094 * 119.99623 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99883 * 224.48286 * 14 13 11 16 16 C 1.38953 * 120.00223 * 44.48609 * 14 13 11 17 17 N 1.31412 * 120.00147 * 17.98701 * 16 14 13 18 18 Si 1.86805 * 119.99868 * 197.98604 * 16 14 13 19 19 H 1.48506 * 109.46845 * 59.99773 * 18 16 14 20 20 H 1.48499 * 109.46851 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46955 * 300.00082 * 18 16 14 22 22 C 1.46498 * 120.00201 * 359.97438 * 13 11 10 23 23 C 1.52991 * 117.49933 * 183.27602 * 22 13 11 24 24 C 1.52999 * 117.49503 * 114.61320 * 22 13 11 25 25 H 1.08997 * 109.47274 * 270.17884 * 1 2 3 26 26 H 1.08993 * 109.47297 * 30.18624 * 1 2 3 27 27 H 1.09007 * 109.46860 * 150.18175 * 1 2 3 28 28 H 1.08003 * 125.43553 * 179.73043 * 4 3 2 29 29 H 1.08001 * 127.02186 * 179.97438 * 5 4 3 30 30 H 0.96994 * 119.99692 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.47110 * 300.00525 * 10 9 7 32 32 H 1.09005 * 109.46813 * 59.99344 * 10 9 7 33 33 H 0.96993 * 119.99853 * 174.96208 * 17 16 14 34 34 H 1.08998 * 115.55312 * 328.95483 * 22 13 11 35 35 H 1.08998 * 117.50255 * 0.02562 * 23 22 13 36 36 H 1.09006 * 117.50117 * 145.02542 * 23 22 13 37 37 H 1.08995 * 117.50098 * 214.97934 * 24 22 13 38 38 H 1.09004 * 117.50058 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7391 -0.0063 5 6 3.6849 -0.5990 -0.0046 6 6 2.3050 -1.1064 0.0035 7 6 1.8741 -2.5156 0.0085 8 8 0.6891 -2.7891 0.0153 9 7 2.7931 -3.5014 0.0057 10 6 2.3648 -4.9024 0.0112 11 6 3.5765 -5.7983 0.0073 12 8 4.6886 -5.3142 0.0000 13 7 3.4245 -7.1375 0.0107 14 6 4.5269 -7.9524 0.0076 15 1 4.5616 -8.8114 -0.6461 16 6 5.5996 -7.6734 0.8456 17 7 5.4390 -6.8704 1.8734 18 14 7.2701 -8.4397 0.5112 19 1 7.7461 -8.0224 -0.8322 20 1 8.2380 -7.9860 1.5419 21 1 7.1540 -9.9195 0.5576 22 6 2.0813 -7.7222 0.0189 23 6 1.9748 -9.2463 0.1001 24 6 1.6528 -8.5249 -1.2111 25 1 -0.3633 0.0032 1.0276 26 1 -0.3633 0.8882 -0.5167 27 1 -0.3633 -0.8917 -0.5110 28 1 4.4172 1.4286 -0.0118 29 1 4.5928 -1.1839 -0.0089 30 1 3.7382 -3.2833 0.0008 31 1 1.7720 -5.0976 0.9049 32 1 1.7622 -5.1016 -0.8750 33 1 6.1667 -6.7329 2.4998 34 1 1.3166 -7.1364 0.5289 35 1 2.9040 -9.8139 0.1478 36 1 1.1398 -9.6632 0.6632 37 1 0.6062 -8.4675 -1.5100 38 1 2.3701 -8.6175 -2.0266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352980371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:40 Heat of formation + Delta-G solvation = -16.212683 kcal Electronic energy + Delta-G solvation = -23128.491748 eV Core-core repulsion = 19553.373747 eV Total energy + Delta-G solvation = -3575.118001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.54786 -39.30942 -38.35260 -36.22210 -34.03246 -32.99722 -32.73170 -31.82812 -31.03779 -28.06703 -26.60250 -24.64211 -22.88753 -21.74234 -21.29304 -20.89538 -19.73212 -19.31796 -17.99846 -16.39916 -16.34558 -16.14597 -15.59310 -15.35762 -14.98402 -14.67518 -14.41663 -13.97137 -13.70236 -13.45008 -13.23402 -13.04934 -12.92706 -12.84313 -12.58763 -11.97064 -11.75603 -11.63704 -11.11248 -10.94407 -10.88907 -10.66593 -10.27171 -10.02468 -9.79138 -9.78506 -9.73030 -8.78841 -8.75082 -8.48181 -8.20797 -7.13419 -6.18774 -3.95527 1.42271 2.08299 2.79100 3.25903 3.33154 3.36091 3.56100 3.59363 3.98628 4.22733 4.51256 4.71480 4.78611 4.88830 4.97414 5.19411 5.25188 5.46482 5.54057 5.56259 5.56942 5.67619 5.73431 5.83465 5.92837 6.03186 6.13171 6.15480 6.21920 6.30510 6.40821 6.68253 6.81240 6.90799 7.00895 7.54847 7.95802 8.17909 8.55112 8.95900 9.02020 9.54869 10.12898 10.90139 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.004242 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.884763 B = 6598.926378 C = 7837.682317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.070 3.930 3 O -0.179 6.179 4 C -0.046 4.046 5 C -0.182 4.182 6 C -0.238 4.238 7 C 0.587 3.413 8 O -0.555 6.555 9 N -0.697 5.697 10 C 0.107 3.893 11 C 0.475 3.525 12 O -0.534 6.534 13 N -0.419 5.419 14 C -0.350 4.350 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.833 5.833 18 Si 0.915 3.085 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.277 1.277 22 C 0.068 3.932 23 C -0.171 4.171 24 C -0.205 4.205 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.207 0.793 29 H 0.160 0.840 30 H 0.411 0.589 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.266 0.734 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 10.010 -2.981 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.017 3.983 3 O -0.076 6.076 4 C -0.111 4.111 5 C -0.202 4.202 6 C -0.243 4.243 7 C 0.374 3.626 8 O -0.436 6.436 9 N -0.350 5.350 10 C -0.021 4.021 11 C 0.262 3.738 12 O -0.413 6.413 13 N -0.140 5.140 14 C -0.477 4.477 15 H 0.097 0.903 16 C -0.137 4.137 17 N -0.466 5.466 18 Si 0.742 3.258 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.038 4.038 23 C -0.209 4.209 24 C -0.244 4.244 25 H 0.105 0.895 26 H 0.093 0.907 27 H 0.128 0.872 28 H 0.224 0.776 29 H 0.177 0.823 30 H 0.249 0.751 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.181 10.467 -2.834 13.007 hybrid contribution 1.543 -0.527 0.083 1.632 sum -5.638 9.940 -2.752 11.755 Atomic orbital electron populations 1.20583 0.83804 1.04901 1.04288 1.22774 0.94062 0.83099 0.98332 1.83742 1.17193 1.34979 1.71666 1.23811 0.83434 0.96365 1.07491 1.23010 0.97051 0.94574 1.05522 1.21198 0.93353 0.93958 1.15740 1.17134 0.85393 0.83683 0.76363 1.90711 1.16605 1.84190 1.52128 1.45548 1.10859 1.05271 1.73334 1.21137 0.97378 0.80868 1.02685 1.19671 0.89039 0.83063 0.81985 1.90502 1.26007 1.73325 1.51432 1.42642 1.02623 1.03382 1.65349 1.18836 0.93957 1.11191 1.23680 0.90290 1.25261 0.99606 0.95204 0.93595 1.69814 1.32783 1.33575 1.10387 0.86230 0.82567 0.78537 0.78421 1.19909 1.21165 1.20295 1.21786 0.88784 0.93013 1.00214 1.23074 1.03040 0.95228 0.99514 1.23325 1.00863 1.07212 0.93005 0.89484 0.90663 0.87239 0.77621 0.82263 0.75095 0.90157 0.90004 0.92427 0.87716 0.87436 0.89667 0.89591 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.88 36.01 0.36 -0.51 16 2 C 0.07 0.95 7.37 -34.96 -0.26 0.69 16 3 O -0.18 -2.22 10.52 7.63 0.08 -2.14 16 4 C -0.05 -0.50 12.03 29.30 0.35 -0.15 16 5 C -0.18 -2.42 10.60 -37.45 -0.40 -2.81 16 6 C -0.24 -3.70 6.31 -103.28 -0.65 -4.35 16 7 C 0.59 10.63 7.81 -12.54 -0.10 10.54 16 8 O -0.56 -10.82 14.85 5.26 0.08 -10.75 16 9 N -0.70 -13.34 5.52 -62.58 -0.35 -13.68 16 10 C 0.11 2.17 4.77 -5.20 -0.02 2.14 16 11 C 0.48 11.70 7.03 -10.98 -0.08 11.63 16 12 O -0.53 -14.83 13.44 5.55 0.07 -14.76 16 13 N -0.42 -10.24 2.83 -107.74 -0.31 -10.54 16 14 C -0.35 -9.29 7.91 -14.93 -0.12 -9.41 16 15 H 0.08 2.03 7.27 -52.49 -0.38 1.64 16 16 C 0.07 2.03 4.39 -17.47 -0.08 1.95 16 17 N -0.83 -24.00 11.75 55.50 0.65 -23.35 16 18 Si 0.92 21.38 29.59 -169.99 -5.03 16.35 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.07 1.34 5.87 -67.94 -0.40 0.95 16 23 C -0.17 -3.03 9.80 -26.70 -0.26 -3.29 16 24 C -0.21 -3.45 10.36 -26.69 -0.28 -3.73 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.11 1.35 6.49 -51.92 -0.34 1.01 16 28 H 0.21 1.37 8.06 -52.48 -0.42 0.94 16 29 H 0.16 1.97 7.74 -52.49 -0.41 1.57 16 30 H 0.41 7.93 6.61 -40.82 -0.27 7.66 16 31 H 0.08 1.61 7.57 -51.93 -0.39 1.21 16 32 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 33 H 0.27 7.36 8.32 -40.82 -0.34 7.02 16 34 H 0.11 1.89 6.96 -51.93 -0.36 1.53 16 35 H 0.11 2.10 6.73 -51.93 -0.35 1.75 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -33.05 328.54 -6.37 -39.42 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -4.59 Total: 10.85 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.93 Total: 3.65 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.00 Total: -47.57 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.23 Total: -27.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.05 -6.37 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352980371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.206 kcal (2) G-P(sol) polarization free energy of solvation -33.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds