Wall clock time and date at job start Tue Mar 31 2020 02:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.33653 * 125.79496 * 2 1 4 4 C 1.34221 * 110.90138 * 180.28719 * 3 2 1 5 5 C 1.34175 * 109.12623 * 359.73033 * 4 3 2 6 6 C 1.36412 * 125.80186 * 179.81823 * 2 1 3 7 7 C 1.47370 * 127.19442 * 359.97438 * 6 2 1 8 8 O 1.21619 * 120.00040 * 359.70662 * 7 6 2 9 9 N 1.34777 * 120.00268 * 179.71254 * 7 6 2 10 10 C 1.46501 * 120.00491 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47292 * 180.02562 * 10 9 7 12 12 O 1.21292 * 120.00223 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99769 * 180.02562 * 11 10 9 14 14 C 1.37094 * 119.99623 * 180.02562 * 13 11 10 15 15 H 1.08001 * 119.99883 * 224.48286 * 14 13 11 16 16 C 1.38953 * 120.00223 * 44.48609 * 14 13 11 17 17 N 1.31412 * 120.00147 * 17.98701 * 16 14 13 18 18 Si 1.86805 * 119.99868 * 197.98604 * 16 14 13 19 19 H 1.48506 * 109.46845 * 59.99773 * 18 16 14 20 20 H 1.48499 * 109.46851 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46955 * 300.00082 * 18 16 14 22 22 C 1.46498 * 120.00201 * 359.97438 * 13 11 10 23 23 C 1.52991 * 117.49933 * 183.27602 * 22 13 11 24 24 C 1.52999 * 117.49503 * 114.61320 * 22 13 11 25 25 H 1.08997 * 109.47274 * 270.17884 * 1 2 3 26 26 H 1.08993 * 109.47297 * 30.18624 * 1 2 3 27 27 H 1.09007 * 109.46860 * 150.18175 * 1 2 3 28 28 H 1.08003 * 125.43553 * 179.73043 * 4 3 2 29 29 H 1.08001 * 127.02186 * 179.97438 * 5 4 3 30 30 H 0.96994 * 119.99692 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.47110 * 300.00525 * 10 9 7 32 32 H 1.09005 * 109.46813 * 59.99344 * 10 9 7 33 33 H 0.96993 * 119.99853 * 174.96208 * 17 16 14 34 34 H 1.08998 * 115.55312 * 328.95483 * 22 13 11 35 35 H 1.08998 * 117.50255 * 0.02562 * 23 22 13 36 36 H 1.09006 * 117.50117 * 145.02542 * 23 22 13 37 37 H 1.08995 * 117.50098 * 214.97934 * 24 22 13 38 38 H 1.09004 * 117.50058 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5859 0.7391 -0.0063 5 6 3.6849 -0.5990 -0.0046 6 6 2.3050 -1.1064 0.0035 7 6 1.8741 -2.5156 0.0085 8 8 0.6891 -2.7891 0.0153 9 7 2.7931 -3.5014 0.0057 10 6 2.3648 -4.9024 0.0112 11 6 3.5765 -5.7983 0.0073 12 8 4.6886 -5.3142 0.0000 13 7 3.4245 -7.1375 0.0107 14 6 4.5269 -7.9524 0.0076 15 1 4.5616 -8.8114 -0.6461 16 6 5.5996 -7.6734 0.8456 17 7 5.4390 -6.8704 1.8734 18 14 7.2701 -8.4397 0.5112 19 1 7.7461 -8.0224 -0.8322 20 1 8.2380 -7.9860 1.5419 21 1 7.1540 -9.9195 0.5576 22 6 2.0813 -7.7222 0.0189 23 6 1.9748 -9.2463 0.1001 24 6 1.6528 -8.5249 -1.2111 25 1 -0.3633 0.0032 1.0276 26 1 -0.3633 0.8882 -0.5167 27 1 -0.3633 -0.8917 -0.5110 28 1 4.4172 1.4286 -0.0118 29 1 4.5928 -1.1839 -0.0089 30 1 3.7382 -3.2833 0.0008 31 1 1.7720 -5.0976 0.9049 32 1 1.7622 -5.1016 -0.8750 33 1 6.1667 -6.7329 2.4998 34 1 1.3166 -7.1364 0.5289 35 1 2.9040 -9.8139 0.1478 36 1 1.1398 -9.6632 0.6632 37 1 0.6062 -8.4675 -1.5100 38 1 2.3701 -8.6175 -2.0266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352980371.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:39 Heat of formation + Delta-G solvation = -38.544212 kcal Electronic energy + Delta-G solvation = -23129.460116 eV Core-core repulsion = 19553.373747 eV Total energy + Delta-G solvation = -3576.086369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.54864 -40.91577 -39.97736 -37.88420 -35.61197 -34.67023 -34.01814 -32.95442 -32.75464 -29.63450 -27.76266 -26.42963 -24.14583 -23.16989 -22.85469 -22.08249 -21.20403 -20.90572 -19.20253 -18.08942 -17.78596 -17.36598 -17.17207 -16.79506 -16.52818 -16.39785 -15.86519 -15.45951 -15.26546 -15.00712 -14.54379 -14.22752 -14.03940 -13.83616 -13.80782 -13.70398 -13.47335 -12.88655 -12.77298 -12.71714 -12.67263 -12.23048 -12.11876 -11.69010 -11.25809 -11.14923 -10.87900 -10.75582 -10.19319 -10.12246 -9.54404 -9.03784 -8.23136 -6.02949 0.30611 1.09298 1.37522 1.45752 1.49506 1.80143 2.09394 2.18267 2.28175 2.38565 3.03671 3.10141 3.31511 3.60578 3.74721 3.87684 3.93022 4.12068 4.26717 4.34324 4.36224 4.41505 4.52786 4.64030 4.65332 4.75781 4.88583 4.90066 5.00527 5.19255 5.25039 5.30616 5.36774 5.45524 5.49205 6.00641 6.16440 6.49639 6.95883 7.06083 7.13995 7.60702 8.21072 8.85250 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.004242 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.884763 B = 6598.926378 C = 7837.682317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.077 3.923 3 O -0.176 6.176 4 C -0.022 4.022 5 C -0.209 4.209 6 C -0.275 4.275 7 C 0.586 3.414 8 O -0.574 6.574 9 N -0.704 5.704 10 C 0.124 3.876 11 C 0.463 3.537 12 O -0.577 6.577 13 N -0.433 5.433 14 C -0.359 4.359 15 H 0.082 0.918 16 C 0.025 3.975 17 N -0.870 5.870 18 Si 0.973 3.027 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.257 1.257 22 C 0.034 3.966 23 C -0.165 4.165 24 C -0.178 4.178 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.253 0.747 29 H 0.159 0.841 30 H 0.409 0.591 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.261 0.739 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.014 10.727 -3.581 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.024 3.976 3 O -0.071 6.071 4 C -0.087 4.087 5 C -0.228 4.228 6 C -0.279 4.279 7 C 0.376 3.624 8 O -0.456 6.456 9 N -0.356 5.356 10 C -0.004 4.004 11 C 0.251 3.749 12 O -0.458 6.458 13 N -0.153 5.153 14 C -0.486 4.486 15 H 0.099 0.901 16 C -0.182 4.182 17 N -0.505 5.505 18 Si 0.798 3.202 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.182 1.182 22 C -0.071 4.071 23 C -0.202 4.202 24 C -0.216 4.216 25 H 0.116 0.884 26 H 0.123 0.877 27 H 0.111 0.889 28 H 0.268 0.732 29 H 0.177 0.823 30 H 0.246 0.754 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.243 11.152 -3.447 14.290 hybrid contribution 1.793 -0.726 0.219 1.947 sum -6.450 10.426 -3.229 12.678 Atomic orbital electron populations 1.20660 0.82180 1.05520 1.05148 1.23164 0.95095 0.82767 0.96624 1.83790 1.17776 1.34356 1.71228 1.24610 0.83662 0.96179 1.04201 1.23123 0.96255 0.95839 1.07607 1.21181 0.95185 0.92953 1.18623 1.17492 0.84926 0.84543 0.75449 1.90684 1.17148 1.84717 1.53066 1.45588 1.10964 1.05032 1.74009 1.20901 0.95342 0.80859 1.03291 1.20340 0.89743 0.83672 0.81138 1.90458 1.27850 1.74258 1.53254 1.42850 1.04103 1.03461 1.64852 1.19109 0.95136 1.11161 1.23177 0.90051 1.26069 1.02810 0.95870 0.93447 1.69930 1.33350 1.35701 1.11500 0.85327 0.78491 0.78846 0.77520 1.20591 1.21311 1.18155 1.22093 0.86973 0.94484 1.03534 1.23127 1.03227 0.93327 1.00568 1.23341 1.02496 1.04177 0.91605 0.88389 0.87701 0.88870 0.73153 0.82299 0.75384 0.90018 0.88578 0.92965 0.86041 0.89685 0.86475 0.85869 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 9.88 71.24 0.70 -0.89 16 2 C 0.08 1.98 7.37 25.26 0.19 2.17 16 3 O -0.18 -3.91 10.52 4.40 0.05 -3.87 16 4 C -0.02 -0.42 12.03 66.89 0.80 0.39 16 5 C -0.21 -5.42 10.60 23.65 0.25 -5.17 16 6 C -0.28 -8.50 6.31 -19.00 -0.12 -8.62 16 7 C 0.59 21.53 7.81 86.65 0.68 22.21 16 8 O -0.57 -22.45 14.85 -4.09 -0.06 -22.51 16 9 N -0.70 -27.61 5.52 -470.15 -2.60 -30.21 16 10 C 0.12 5.08 4.77 85.63 0.41 5.49 16 11 C 0.46 23.35 7.03 87.65 0.62 23.97 16 12 O -0.58 -33.21 13.44 -3.07 -0.04 -33.26 16 13 N -0.43 -21.37 2.83 -613.15 -1.74 -23.11 16 14 C -0.36 -19.32 7.91 84.04 0.66 -18.65 16 15 H 0.08 4.22 7.27 -2.91 -0.02 4.20 16 16 C 0.02 1.37 4.39 84.93 0.37 1.75 16 17 N -0.87 -51.66 11.75 21.66 0.25 -51.41 16 18 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 C 0.03 1.31 5.87 44.99 0.26 1.57 16 23 C -0.17 -5.55 9.80 30.62 0.30 -5.25 16 24 C -0.18 -5.57 10.36 30.62 0.32 -5.25 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 2.23 6.49 -2.38 -0.02 2.21 16 28 H 0.25 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.16 4.01 7.74 -2.91 -0.02 3.99 16 30 H 0.41 16.48 6.61 -92.71 -0.61 15.87 16 31 H 0.08 3.31 7.57 -2.39 -0.02 3.29 16 32 H 0.10 3.62 8.11 -2.38 -0.02 3.60 16 33 H 0.26 14.98 8.32 -92.71 -0.77 14.21 16 34 H 0.12 4.21 6.96 -2.39 -0.02 4.20 16 35 H 0.08 3.26 6.73 -2.39 -0.02 3.25 16 36 H 0.12 3.16 8.14 -2.38 -0.02 3.15 16 37 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 Total: -1.00 -73.59 328.54 3.83 -69.76 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.49 Total: 34.26 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 5.45 Total: 13.72 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -4.08 Total: -104.72 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -0.06 Total: -59.63 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.59 3.83 -69.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352980371.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.217 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds