Wall clock time and date at job start Tue Mar 31 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46753 * 2 1 4 4 C 1.38628 * 120.47102 * 101.96869 * 3 2 1 5 5 C 1.38584 * 118.48784 * 180.02562 * 4 3 2 6 6 C 1.38623 * 119.35930 * 359.97438 * 5 4 3 7 7 N 1.31477 * 120.90680 * 359.97438 * 6 5 4 8 8 C 1.32778 * 121.63692 * 0.02562 * 7 6 5 9 9 C 1.48070 * 119.72559 * 179.97438 * 8 7 6 10 10 O 1.21425 * 120.00197 * 174.76130 * 9 8 7 11 11 O 1.34682 * 119.99686 * 354.75991 * 9 8 7 12 12 C 1.45197 * 116.99878 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47279 * 179.97438 * 12 11 9 14 14 O 1.21280 * 119.99635 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99928 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99852 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.46987 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00683 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99945 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99842 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99774 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47292 * 89.99607 * 21 19 17 23 23 H 1.48501 * 109.46754 * 209.99927 * 21 19 17 24 24 H 1.48497 * 109.47208 * 329.99445 * 21 19 17 25 25 H 1.08999 * 109.47178 * 299.99908 * 1 2 3 26 26 H 1.08996 * 109.47149 * 60.00626 * 1 2 3 27 27 H 1.09000 * 109.46593 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47483 * 239.99545 * 2 1 3 29 29 H 1.09004 * 109.46924 * 119.99614 * 2 1 3 30 30 H 1.07998 * 120.75752 * 0.03627 * 4 3 2 31 31 H 1.08001 * 120.31816 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.54784 * 180.28211 * 6 5 4 33 33 H 1.09000 * 109.47522 * 300.00359 * 12 11 9 34 34 H 1.09010 * 109.46797 * 60.00228 * 12 11 9 35 35 H 0.97000 * 119.99873 * 359.97438 * 15 13 12 36 36 H 1.09000 * 109.46873 * 299.99948 * 16 15 13 37 37 H 1.08997 * 109.47090 * 59.99568 * 16 15 13 38 38 H 0.96997 * 119.99215 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5002 2.0011 1.1688 5 6 2.9519 3.3104 1.1220 6 6 2.9237 3.9965 -0.0822 7 7 2.4756 3.4217 -1.1765 8 6 2.0339 2.1695 -1.1748 9 6 1.5380 1.5642 -2.4318 10 8 1.2224 0.3920 -2.4580 11 8 1.4369 2.3139 -3.5461 12 6 0.9437 1.6543 -4.7419 13 6 0.8987 2.6427 -5.8786 14 8 1.2484 3.7900 -5.6987 15 7 0.4698 2.2517 -7.0950 16 6 0.4266 3.2124 -8.2002 17 6 -0.0854 2.5278 -9.4411 18 1 -0.3516 1.4816 -9.4100 19 6 -0.2141 3.2371 -10.6165 20 7 -0.6605 2.6395 -11.6997 21 14 0.2470 5.0465 -10.6707 22 1 1.6799 5.1815 -11.0364 23 1 -0.5897 5.7403 -11.6826 24 1 0.0171 5.6561 -9.3363 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 2.5126 1.4454 2.0948 31 1 3.3231 3.7913 2.0150 32 1 3.2792 5.0155 -0.1231 33 1 1.6078 0.8302 -5.0025 34 1 -0.0588 1.2683 -4.5566 35 1 0.1905 1.3340 -7.2389 36 1 -0.2373 4.0366 -7.9393 37 1 1.4290 3.5981 -8.3857 38 1 -0.7506 3.1384 -12.5266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767058261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:49 Heat of formation + Delta-G solvation = -82.258325 kcal Electronic energy + Delta-G solvation = -22294.046151 eV Core-core repulsion = 18716.064196 eV Total energy + Delta-G solvation = -3577.981955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.29292 -39.92331 -38.75629 -36.69244 -34.73356 -34.33077 -32.72430 -32.40539 -30.37987 -29.42151 -27.25828 -25.35350 -24.51964 -22.41303 -21.83918 -21.34120 -20.08345 -18.56458 -17.63738 -17.05141 -16.77579 -16.64170 -16.14924 -15.82603 -15.10642 -15.03630 -14.69919 -14.29635 -14.17612 -13.90807 -13.64982 -13.28183 -13.07930 -13.04838 -12.57763 -12.36618 -12.32304 -12.06540 -11.77916 -11.45560 -11.04699 -10.80205 -10.69600 -10.46771 -10.23575 -9.98137 -9.82756 -9.52332 -9.43460 -9.29212 -8.79898 -8.23377 -6.22753 -4.25549 0.16961 0.81089 2.17755 2.23744 3.07570 3.27221 3.33815 3.42490 3.43607 3.68568 4.02000 4.30449 4.32409 4.33294 4.50184 4.55662 4.87862 4.98392 5.06000 5.10526 5.12020 5.13796 5.18714 5.25338 5.41930 5.55763 5.61902 5.71066 5.88649 6.02708 6.10251 6.34517 6.76199 7.03722 7.12687 7.30588 7.34157 7.66681 8.07622 8.43782 8.70953 8.83166 9.36634 10.89038 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.002877 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.441617 B = 9730.287660 C =10520.470671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.064 4.064 4 C -0.088 4.088 5 C -0.137 4.137 6 C 0.090 3.910 7 N -0.424 5.424 8 C 0.090 3.910 9 C 0.521 3.479 10 O -0.492 6.492 11 O -0.305 6.305 12 C 0.047 3.953 13 C 0.501 3.499 14 O -0.531 6.531 15 N -0.700 5.700 16 C 0.222 3.778 17 C -0.545 4.545 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.891 5.891 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.167 0.833 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -3.974 28.241 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.067 4.067 4 C -0.113 4.113 5 C -0.157 4.157 6 C -0.070 4.070 7 N -0.135 5.135 8 C -0.046 4.046 9 C 0.364 3.636 10 O -0.381 6.381 11 O -0.218 6.218 12 C -0.031 4.031 13 C 0.284 3.716 14 O -0.408 6.408 15 N -0.351 5.351 16 C 0.101 3.899 17 C -0.583 4.583 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.528 5.528 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.184 1.184 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.161 0.839 32 H 0.184 0.816 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.232 0.768 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.830 -3.002 27.264 28.041 hybrid contribution 0.077 -0.032 0.466 0.474 sum 5.908 -3.034 27.730 28.514 Atomic orbital electron populations 1.21647 0.93904 1.02319 1.01673 1.20854 0.97102 0.90739 1.04382 1.20941 0.95726 0.97868 0.92141 1.21537 0.96801 0.95150 0.97859 1.22508 0.98149 0.95107 0.99968 1.22944 0.96148 1.00571 0.87363 1.67732 1.06056 1.08995 1.30688 1.19860 1.02301 0.91486 0.90954 1.20835 0.74999 0.84164 0.83630 1.90798 1.45902 1.16315 1.85047 1.86742 1.75819 1.41595 1.17624 1.22899 1.01802 0.95492 0.82906 1.19893 0.79317 0.88648 0.83703 1.90722 1.47717 1.19328 1.83051 1.46051 1.64551 1.15334 1.09173 1.19547 0.97096 0.89085 0.84208 1.21069 1.45730 0.98947 0.92555 0.90129 1.24791 0.94026 0.98638 0.95127 1.69879 1.45135 1.36976 1.00853 0.86817 0.79068 0.84993 0.78845 1.19784 1.20862 1.18421 0.93295 0.92237 0.91842 0.87541 0.91129 0.83764 0.83860 0.81617 0.88149 0.88178 0.76753 0.95431 0.95889 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.41 37.16 0.35 -0.87 16 2 C -0.09 -0.81 5.36 -27.88 -0.15 -0.96 16 3 C -0.06 -0.63 5.19 -104.08 -0.54 -1.17 16 4 C -0.09 -0.61 9.81 -39.31 -0.39 -0.99 16 5 C -0.14 -0.88 10.11 -39.31 -0.40 -1.28 16 6 C 0.09 0.82 11.18 -17.56 -0.20 0.62 16 7 N -0.42 -5.65 10.12 -9.81 -0.10 -5.75 16 8 C 0.09 1.16 6.74 -83.03 -0.56 0.60 16 9 C 0.52 7.55 7.52 34.76 0.26 7.81 16 10 O -0.49 -6.85 11.57 -19.21 -0.22 -7.07 16 11 O -0.30 -5.13 9.58 -47.12 -0.45 -5.58 16 12 C 0.05 0.70 5.95 36.01 0.21 0.92 16 13 C 0.50 9.88 7.91 -10.98 -0.09 9.79 16 14 O -0.53 -12.78 16.50 -14.10 -0.23 -13.01 16 15 N -0.70 -14.14 5.55 -61.48 -0.34 -14.48 16 16 C 0.22 5.47 4.50 -5.20 -0.02 5.44 16 17 C -0.55 -14.88 9.83 -34.44 -0.34 -15.22 16 18 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 21 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.11 1.10 5.92 -51.93 -0.31 0.79 16 29 H 0.07 0.44 8.02 -51.93 -0.42 0.02 16 30 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 32 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 35 H 0.40 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 37 H 0.02 0.59 7.57 -51.93 -0.39 0.20 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -34.85 330.83 -6.91 -41.76 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.70 Total: 1.19 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -1.95 Total: 6.81 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.33 Total: -45.86 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.91 Total: -25.66 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.85 -6.91 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767058261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.498 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds