Wall clock time and date at job start Tue Mar 31 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46753 * 2 1 4 4 C 1.38628 * 120.47102 * 101.96869 * 3 2 1 5 5 C 1.38584 * 118.48784 * 180.02562 * 4 3 2 6 6 C 1.38623 * 119.35930 * 359.97438 * 5 4 3 7 7 N 1.31477 * 120.90680 * 359.97438 * 6 5 4 8 8 C 1.32778 * 121.63692 * 0.02562 * 7 6 5 9 9 C 1.48070 * 119.72559 * 179.97438 * 8 7 6 10 10 O 1.21425 * 120.00197 * 174.76130 * 9 8 7 11 11 O 1.34682 * 119.99686 * 354.75991 * 9 8 7 12 12 C 1.45197 * 116.99878 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47279 * 179.97438 * 12 11 9 14 14 O 1.21280 * 119.99635 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99928 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99852 * 180.02562 * 15 13 12 17 17 C 1.50693 * 109.46987 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00683 * 359.97438 * 17 16 15 19 19 C 1.37885 * 119.99945 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99842 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99774 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47292 * 89.99607 * 21 19 17 23 23 H 1.48501 * 109.46754 * 209.99927 * 21 19 17 24 24 H 1.48497 * 109.47208 * 329.99445 * 21 19 17 25 25 H 1.08999 * 109.47178 * 299.99908 * 1 2 3 26 26 H 1.08996 * 109.47149 * 60.00626 * 1 2 3 27 27 H 1.09000 * 109.46593 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47483 * 239.99545 * 2 1 3 29 29 H 1.09004 * 109.46924 * 119.99614 * 2 1 3 30 30 H 1.07998 * 120.75752 * 0.03627 * 4 3 2 31 31 H 1.08001 * 120.31816 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.54784 * 180.28211 * 6 5 4 33 33 H 1.09000 * 109.47522 * 300.00359 * 12 11 9 34 34 H 1.09010 * 109.46797 * 60.00228 * 12 11 9 35 35 H 0.97000 * 119.99873 * 359.97438 * 15 13 12 36 36 H 1.09000 * 109.46873 * 299.99948 * 16 15 13 37 37 H 1.08997 * 109.47090 * 59.99568 * 16 15 13 38 38 H 0.96997 * 119.99215 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.5002 2.0011 1.1688 5 6 2.9519 3.3104 1.1220 6 6 2.9237 3.9965 -0.0822 7 7 2.4756 3.4217 -1.1765 8 6 2.0339 2.1695 -1.1748 9 6 1.5380 1.5642 -2.4318 10 8 1.2224 0.3920 -2.4580 11 8 1.4369 2.3139 -3.5461 12 6 0.9437 1.6543 -4.7419 13 6 0.8987 2.6427 -5.8786 14 8 1.2484 3.7900 -5.6987 15 7 0.4698 2.2517 -7.0950 16 6 0.4266 3.2124 -8.2002 17 6 -0.0854 2.5278 -9.4411 18 1 -0.3516 1.4816 -9.4100 19 6 -0.2141 3.2371 -10.6165 20 7 -0.6605 2.6395 -11.6997 21 14 0.2470 5.0465 -10.6707 22 1 1.6799 5.1815 -11.0364 23 1 -0.5897 5.7403 -11.6826 24 1 0.0171 5.6561 -9.3363 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 2.5126 1.4454 2.0948 31 1 3.3231 3.7913 2.0150 32 1 3.2792 5.0155 -0.1231 33 1 1.6078 0.8302 -5.0025 34 1 -0.0588 1.2683 -4.5566 35 1 0.1905 1.3340 -7.2389 36 1 -0.2373 4.0366 -7.9393 37 1 1.4290 3.5981 -8.3857 38 1 -0.7506 3.1384 -12.5266 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767058261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:48 Heat of formation + Delta-G solvation = -106.687363 kcal Electronic energy + Delta-G solvation = -22295.105473 eV Core-core repulsion = 18716.064196 eV Total energy + Delta-G solvation = -3579.041277 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.18809 -40.99418 -40.21860 -37.81012 -36.23141 -35.45226 -34.47923 -33.37673 -31.33650 -30.79917 -28.90393 -26.24120 -25.17080 -24.16482 -22.83429 -22.17871 -21.75278 -19.65321 -19.16942 -18.39426 -17.91703 -17.58564 -17.51042 -16.84821 -16.64411 -16.33806 -16.06610 -15.46989 -15.18397 -14.95923 -14.75742 -14.40999 -14.36539 -14.19811 -13.90245 -13.73640 -13.66206 -13.10302 -13.02143 -12.72501 -12.49989 -12.25666 -11.94693 -11.85270 -11.68387 -11.30533 -11.00465 -10.93457 -10.85775 -10.52542 -10.13330 -10.06212 -8.41264 -6.48678 -0.56906 0.19814 1.13188 1.26265 1.32622 1.35403 1.47121 1.49831 2.27239 2.38279 2.72123 2.94015 3.13295 3.56956 3.64053 3.73874 3.85803 3.97924 4.00655 4.01670 4.34025 4.39610 4.47671 4.49767 4.72758 4.79045 4.95481 4.98495 4.99426 5.05946 5.10258 5.22025 5.35769 5.37718 5.41376 5.62343 6.04623 6.37062 6.50940 6.69478 6.85730 7.10375 7.26022 8.73299 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030546 B = 0.002877 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.441617 B = 9730.287660 C =10520.470671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.065 4.065 4 C -0.082 4.082 5 C -0.115 4.115 6 C 0.076 3.924 7 N -0.474 5.474 8 C 0.052 3.948 9 C 0.516 3.484 10 O -0.495 6.495 11 O -0.333 6.333 12 C 0.056 3.944 13 C 0.504 3.496 14 O -0.577 6.577 15 N -0.696 5.696 16 C 0.232 3.768 17 C -0.548 4.548 18 H 0.063 0.937 19 C 0.028 3.972 20 N -0.930 5.930 21 Si 0.936 3.064 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.261 1.261 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.413 0.587 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.601 -3.969 31.535 32.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.107 4.107 5 C -0.134 4.134 6 C -0.085 4.085 7 N -0.186 5.186 8 C -0.082 4.082 9 C 0.360 3.640 10 O -0.383 6.383 11 O -0.248 6.248 12 C -0.021 4.021 13 C 0.290 3.710 14 O -0.457 6.457 15 N -0.347 5.347 16 C 0.109 3.891 17 C -0.585 4.585 18 H 0.081 0.919 19 C -0.173 4.173 20 N -0.568 5.568 21 Si 0.760 3.240 22 H -0.189 1.189 23 H -0.197 1.197 24 H -0.185 1.185 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.121 0.879 30 H 0.202 0.798 31 H 0.205 0.795 32 H 0.203 0.797 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.250 0.750 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.653 -3.051 30.565 31.429 hybrid contribution -0.160 -0.069 -0.426 0.461 sum 6.492 -3.121 30.139 30.988 Atomic orbital electron populations 1.21627 0.94199 1.02602 1.00933 1.20847 0.96784 0.90357 1.04873 1.21163 0.95504 0.98054 0.92076 1.22042 0.95097 0.95528 0.98076 1.22967 0.95596 0.94661 1.00207 1.23459 0.95807 1.01641 0.87578 1.67604 1.07937 1.09770 1.33240 1.19852 1.04990 0.92343 0.91044 1.21322 0.74856 0.84244 0.83575 1.90781 1.46241 1.16215 1.85090 1.86725 1.76534 1.43014 1.18536 1.22808 1.03988 0.94001 0.81308 1.20571 0.77543 0.88745 0.84185 1.90695 1.49590 1.21630 1.83815 1.45837 1.64746 1.15445 1.08710 1.19173 0.96025 0.89374 0.84531 1.21257 1.45225 0.98378 0.93682 0.91928 1.25580 0.94029 1.02816 0.94868 1.69975 1.46454 1.38789 1.01598 0.85876 0.79232 0.80035 0.78888 1.18944 1.19725 1.18499 0.91924 0.95029 0.91037 0.89660 0.87944 0.79795 0.79481 0.79749 0.85593 0.85623 0.75009 0.96589 0.96705 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.41 71.98 0.68 -1.54 16 2 C -0.09 -1.41 5.36 29.85 0.16 -1.25 16 3 C -0.07 -1.16 5.19 -19.51 -0.10 -1.26 16 4 C -0.08 -0.82 9.81 22.45 0.22 -0.60 16 5 C -0.12 -1.03 10.11 22.44 0.23 -0.80 16 6 C 0.08 1.25 11.18 84.84 0.95 2.20 16 7 N -0.47 -12.70 10.12 -184.94 -1.87 -14.57 16 8 C 0.05 1.35 6.74 41.87 0.28 1.63 16 9 C 0.52 15.31 7.52 70.43 0.53 15.84 16 10 O -0.49 -13.90 11.57 20.08 0.23 -13.67 16 11 O -0.33 -11.53 9.58 -49.53 -0.47 -12.00 16 12 C 0.06 1.67 5.95 71.24 0.42 2.10 16 13 C 0.50 20.03 7.91 87.66 0.69 20.72 16 14 O -0.58 -28.42 16.50 15.77 0.26 -28.16 16 15 N -0.70 -28.21 5.55 -466.80 -2.59 -30.79 16 16 C 0.23 11.53 4.50 85.63 0.38 11.91 16 17 C -0.55 -30.29 9.83 25.60 0.25 -30.04 16 18 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 19 C 0.03 1.57 5.47 84.66 0.46 2.03 16 20 N -0.93 -55.63 13.96 21.45 0.30 -55.33 16 21 Si 0.94 44.38 27.47 68.60 1.88 46.26 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.03 0.68 6.44 -2.39 -0.02 0.67 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.70 5.92 -2.39 -0.01 1.69 16 29 H 0.10 0.91 8.02 -2.39 -0.02 0.89 16 30 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 31 H 0.19 0.02 8.06 -2.91 -0.02 -0.01 16 32 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.13 3.12 8.14 -2.38 -0.02 3.10 16 35 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16 36 H 0.02 0.84 7.20 -2.39 -0.02 0.83 16 37 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -78.59 330.83 3.17 -75.42 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.27 Total: 11.89 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 5.16 Total: 20.95 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.16 Total: -100.70 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: 0.02 Total: -53.83 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -78.59 3.17 -75.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767058261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.266 kcal (2) G-P(sol) polarization free energy of solvation -78.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds