Wall clock time and date at job start Tue Mar 31 2020 03:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34770 * 120.00095 * 2 1 4 4 O 1.21285 * 120.00482 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00192 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46743 * 55.00253 * 5 3 2 7 7 O 1.42901 * 109.47182 * 175.00068 * 5 3 2 8 8 C 1.53000 * 109.47032 * 295.00766 * 5 3 2 9 9 N 1.46501 * 109.47037 * 179.97438 * 8 5 3 10 10 C 1.34773 * 120.00205 * 179.97438 * 9 8 5 11 11 O 1.21589 * 119.99935 * 0.02562 * 10 9 8 12 12 C 1.47640 * 120.00306 * 179.97438 * 10 9 8 13 13 C 1.40019 * 119.89362 * 359.72607 * 12 10 9 14 14 C 1.36312 * 120.10232 * 179.75808 * 13 12 10 15 15 C 1.40890 * 119.89636 * 0.51581 * 14 13 12 16 16 C 1.41101 * 120.10502 * 179.71534 * 15 14 13 17 17 H 1.07997 * 120.00217 * 204.64582 * 16 15 14 18 18 C 1.40232 * 119.99880 * 24.64732 * 16 15 14 19 19 N 1.30640 * 120.00301 * 17.87355 * 18 16 15 20 20 Si 1.86802 * 119.99915 * 197.87427 * 18 16 15 21 21 H 1.48505 * 109.46885 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47082 * 120.00008 * 20 18 16 23 23 H 1.48498 * 109.47294 * 240.00126 * 20 18 16 24 24 C 1.40888 * 119.79083 * 359.73873 * 15 14 13 25 25 C 1.36316 * 119.89195 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.47413 * 59.99546 * 1 2 3 27 27 H 1.09001 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47106 * 299.99705 * 1 2 3 29 29 H 0.96998 * 119.99985 * 180.02562 * 2 1 3 30 30 H 0.96701 * 113.99846 * 60.00456 * 7 5 3 31 31 H 1.09005 * 109.46921 * 299.99048 * 8 5 3 32 32 H 1.08990 * 109.47448 * 59.99716 * 8 5 3 33 33 H 0.97000 * 119.99704 * 359.97438 * 9 8 5 34 34 H 1.07996 * 119.94277 * 0.02562 * 13 12 10 35 35 H 1.08005 * 120.04714 * 180.22905 * 14 13 12 36 36 H 0.96993 * 120.00552 * 179.97438 * 19 18 16 37 37 H 1.07999 * 120.05431 * 179.97438 * 24 15 14 38 38 H 1.08007 * 119.94824 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0095 0.5776 -0.8410 7 8 4.1223 2.5093 -0.1169 8 6 4.1554 0.5577 1.3082 9 7 5.6204 0.5571 1.3085 10 6 6.2939 0.0643 2.3668 11 8 5.6856 -0.3802 3.3211 12 6 7.7703 0.0633 2.3669 13 6 8.4686 0.5695 1.2638 14 6 9.8317 0.5751 1.2615 15 6 10.5380 0.0605 2.3666 16 6 11.9490 0.0586 2.3663 17 1 12.4882 -0.6540 2.9727 18 6 12.6512 0.9822 1.5786 19 7 12.0466 2.0487 1.1271 20 14 14.4511 0.6876 1.1748 21 1 14.8975 -0.5825 1.8018 22 1 14.6200 0.5994 -0.2979 23 1 15.2667 1.8118 1.7002 24 6 9.8309 -0.4527 3.4719 25 6 8.4678 -0.4487 3.4677 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.8367 3.0922 0.5999 31 1 3.7918 1.1473 2.1498 32 1 3.7921 -0.4660 1.3978 33 1 6.1057 0.9114 0.5470 34 1 7.9263 0.9601 0.4155 35 1 10.3694 0.9692 0.4117 36 1 12.5323 2.6877 0.5825 37 1 10.3680 -0.8486 4.3211 38 1 7.9248 -0.8423 4.3143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816327619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:30 Heat of formation + Delta-G solvation = -112.841702 kcal Electronic energy + Delta-G solvation = -22254.659116 eV Core-core repulsion = 18675.350967 eV Total energy + Delta-G solvation = -3579.308150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.38261 -39.07880 -37.31370 -36.73084 -35.04052 -33.91419 -33.87377 -30.75957 -29.66005 -29.44321 -27.00509 -25.77156 -23.75508 -21.81595 -21.02199 -20.88737 -19.74594 -18.36779 -17.56727 -17.33715 -16.81198 -15.88985 -15.60264 -15.44240 -15.17090 -15.03780 -14.16915 -14.02336 -13.97831 -13.74631 -13.20439 -13.12499 -12.75809 -12.67619 -12.40652 -12.15080 -12.01654 -11.93080 -11.40048 -11.29386 -11.02935 -10.95941 -10.67588 -10.07917 -9.95486 -9.58843 -9.52593 -9.37256 -9.04142 -8.75018 -7.74522 -7.57271 -7.05909 -4.62727 2.18167 2.19346 2.77497 2.88758 2.94006 2.99424 3.01860 3.57092 3.72212 3.81295 4.17705 4.38453 4.50529 4.53010 4.74477 4.89668 5.15390 5.41831 5.43990 5.53397 5.59696 5.97299 6.01139 6.05211 6.29009 6.74263 6.78518 6.80500 6.98759 7.01663 7.10896 7.31442 7.41203 7.61797 7.75953 7.79976 7.83981 8.04636 8.15896 8.37833 8.60760 8.72904 8.98633 9.85958 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.002879 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.284194 B = 9724.184333 C =10356.825822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.731 5.731 3 C 0.490 3.510 4 O -0.529 6.529 5 C 0.082 3.918 6 H 0.131 0.869 7 O -0.531 6.531 8 C 0.100 3.900 9 N -0.736 5.736 10 C 0.573 3.427 11 O -0.577 6.577 12 C -0.286 4.286 13 C -0.061 4.061 14 C -0.179 4.179 15 C 0.129 3.871 16 C -0.441 4.441 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.769 5.769 20 Si 0.913 3.087 21 H -0.257 1.257 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.240 4.240 25 C -0.021 4.021 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.405 0.595 30 H 0.387 0.613 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.404 0.596 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 -3.138 -5.485 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.385 5.385 3 C 0.275 3.725 4 O -0.405 6.405 5 C 0.019 3.981 6 H 0.149 0.851 7 O -0.336 6.336 8 C -0.026 4.026 9 N -0.391 5.391 10 C 0.368 3.632 11 O -0.459 6.459 12 C -0.291 4.291 13 C -0.080 4.080 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.148 4.148 19 N -0.392 5.392 20 Si 0.737 3.263 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.259 4.259 25 C -0.040 4.040 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.240 0.760 30 H 0.237 0.763 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.240 0.760 34 H 0.108 0.892 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.153 -2.665 -5.482 14.497 hybrid contribution 0.844 -0.027 -0.124 0.854 sum -12.309 -2.692 -5.606 13.791 Atomic orbital electron populations 1.21575 0.79355 1.02469 1.02448 1.45871 1.08089 1.08849 1.75687 1.21481 0.90952 0.84068 0.75991 1.90735 1.69909 1.31247 1.48597 1.22117 0.89328 0.86632 1.00071 0.85116 1.86612 1.74826 1.18962 1.53194 1.21704 0.83394 1.01421 0.96053 1.45764 1.04830 1.66224 1.22282 1.18618 0.88325 0.75518 0.80719 1.90638 1.70731 1.49253 1.35258 1.18841 0.89569 1.20294 1.00392 1.20489 0.94877 0.97255 0.95416 1.20983 0.92430 1.06664 0.99697 1.17800 0.93304 0.86842 0.89533 1.19892 0.91695 1.13848 1.21390 0.89643 1.26115 1.01668 0.93598 0.93405 1.69742 1.39071 1.06562 1.23852 0.86169 0.80939 0.79947 0.79291 1.18054 1.19354 1.19652 1.20715 0.93194 1.12732 0.99282 1.20352 0.93839 0.94387 0.95433 0.92127 0.90410 0.92044 0.76037 0.76323 0.91176 0.90734 0.75964 0.89181 0.86167 0.90203 0.88371 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.73 -5.67 5.67 -67.07 -0.38 -6.05 16 3 C 0.49 5.35 7.17 -10.99 -0.08 5.28 16 4 O -0.53 -7.77 16.32 -14.31 -0.23 -8.00 16 5 C 0.08 0.84 3.46 -27.88 -0.10 0.75 16 6 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 7 O -0.53 -6.46 12.74 -55.09 -0.70 -7.16 16 8 C 0.10 1.23 5.29 -4.04 -0.02 1.20 16 9 N -0.74 -11.46 5.40 -61.31 -0.33 -11.79 16 10 C 0.57 11.68 7.76 -12.42 -0.10 11.59 16 11 O -0.58 -13.18 16.32 5.29 0.09 -13.10 16 12 C -0.29 -6.39 5.89 -104.73 -0.62 -7.00 16 13 C -0.06 -1.33 9.47 -39.61 -0.38 -1.70 16 14 C -0.18 -4.31 8.63 -39.27 -0.34 -4.65 16 15 C 0.13 3.23 5.58 -106.81 -0.60 2.63 16 16 C -0.44 -10.82 9.04 -37.75 -0.34 -11.16 16 17 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 18 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 19 N -0.77 -18.25 10.95 55.56 0.61 -17.64 16 20 Si 0.91 17.04 29.60 -169.99 -5.03 12.01 16 21 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 24 C -0.24 -5.72 9.73 -39.27 -0.38 -6.10 16 25 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.41 2.12 8.61 -40.82 -0.35 1.77 16 30 H 0.39 4.10 8.79 45.56 0.40 4.50 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 33 H 0.40 5.87 6.35 -40.82 -0.26 5.61 16 34 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 35 H 0.12 2.95 6.16 -52.48 -0.32 2.62 16 36 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.10 2.25 7.63 -52.48 -0.40 1.84 16 LS Contribution 332.53 15.07 5.01 5.01 Total: -1.00 -31.60 332.53 -7.51 -39.10 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -3.77 Total: 14.83 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -2.77 Total: -7.21 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.10 Total: -35.48 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.85 Total: -28.26 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.60 -7.51 -39.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816327619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.737 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds