Wall clock time and date at job start Tue Mar 31 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34770 * 120.00095 * 2 1 4 4 O 1.21285 * 120.00482 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00192 * 179.97438 * 3 2 1 6 6 H 1.08997 * 109.46743 * 55.00253 * 5 3 2 7 7 O 1.42901 * 109.47182 * 175.00068 * 5 3 2 8 8 C 1.53000 * 109.47032 * 295.00766 * 5 3 2 9 9 N 1.46501 * 109.47037 * 179.97438 * 8 5 3 10 10 C 1.34773 * 120.00205 * 179.97438 * 9 8 5 11 11 O 1.21589 * 119.99935 * 0.02562 * 10 9 8 12 12 C 1.47640 * 120.00306 * 179.97438 * 10 9 8 13 13 C 1.40019 * 119.89362 * 359.72607 * 12 10 9 14 14 C 1.36312 * 120.10232 * 179.75808 * 13 12 10 15 15 C 1.40890 * 119.89636 * 0.51581 * 14 13 12 16 16 C 1.41101 * 120.10502 * 179.71534 * 15 14 13 17 17 H 1.07997 * 120.00217 * 204.64582 * 16 15 14 18 18 C 1.40232 * 119.99880 * 24.64732 * 16 15 14 19 19 N 1.30640 * 120.00301 * 17.87355 * 18 16 15 20 20 Si 1.86802 * 119.99915 * 197.87427 * 18 16 15 21 21 H 1.48505 * 109.46885 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47082 * 120.00008 * 20 18 16 23 23 H 1.48498 * 109.47294 * 240.00126 * 20 18 16 24 24 C 1.40888 * 119.79083 * 359.73873 * 15 14 13 25 25 C 1.36316 * 119.89195 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.47413 * 59.99546 * 1 2 3 27 27 H 1.09001 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47106 * 299.99705 * 1 2 3 29 29 H 0.96998 * 119.99985 * 180.02562 * 2 1 3 30 30 H 0.96701 * 113.99846 * 60.00456 * 7 5 3 31 31 H 1.09005 * 109.46921 * 299.99048 * 8 5 3 32 32 H 1.08990 * 109.47448 * 59.99716 * 8 5 3 33 33 H 0.97000 * 119.99704 * 359.97438 * 9 8 5 34 34 H 1.07996 * 119.94277 * 0.02562 * 13 12 10 35 35 H 1.08005 * 120.04714 * 180.22905 * 14 13 12 36 36 H 0.96993 * 120.00552 * 179.97438 * 19 18 16 37 37 H 1.07999 * 120.05431 * 179.97438 * 24 15 14 38 38 H 1.08007 * 119.94824 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 1 4.0095 0.5776 -0.8410 7 8 4.1223 2.5093 -0.1169 8 6 4.1554 0.5577 1.3082 9 7 5.6204 0.5571 1.3085 10 6 6.2939 0.0643 2.3668 11 8 5.6856 -0.3802 3.3211 12 6 7.7703 0.0633 2.3669 13 6 8.4686 0.5695 1.2638 14 6 9.8317 0.5751 1.2615 15 6 10.5380 0.0605 2.3666 16 6 11.9490 0.0586 2.3663 17 1 12.4882 -0.6540 2.9727 18 6 12.6512 0.9822 1.5786 19 7 12.0466 2.0487 1.1271 20 14 14.4511 0.6876 1.1748 21 1 14.8975 -0.5825 1.8018 22 1 14.6200 0.5994 -0.2979 23 1 15.2667 1.8118 1.7002 24 6 9.8309 -0.4527 3.4719 25 6 8.4678 -0.4487 3.4677 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9500 -0.8400 -0.0004 30 1 3.8367 3.0922 0.5999 31 1 3.7918 1.1473 2.1498 32 1 3.7921 -0.4660 1.3978 33 1 6.1057 0.9114 0.5470 34 1 7.9263 0.9601 0.4155 35 1 10.3694 0.9692 0.4117 36 1 12.5323 2.6877 0.5825 37 1 10.3680 -0.8486 4.3211 38 1 7.9248 -0.8423 4.3143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816327619.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:29 Heat of formation + Delta-G solvation = -137.019845 kcal Electronic energy + Delta-G solvation = -22255.707559 eV Core-core repulsion = 18675.350967 eV Total energy + Delta-G solvation = -3580.356592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33818 -40.59043 -38.93469 -37.82973 -35.89567 -35.65906 -35.16170 -32.29208 -31.29378 -30.84724 -28.14879 -27.11514 -24.85857 -23.41347 -22.72238 -21.86195 -21.21329 -19.36201 -19.25905 -18.76228 -17.71145 -17.26913 -17.03782 -16.48480 -16.28199 -16.07869 -15.72774 -15.32059 -15.26232 -15.07861 -14.80922 -14.42117 -13.92887 -13.84024 -13.73509 -13.54285 -13.18466 -13.08957 -12.98197 -12.84534 -12.60718 -12.36465 -11.94229 -11.75125 -11.35534 -11.12225 -10.99068 -10.61088 -10.24338 -10.12689 -9.55442 -9.39331 -8.78438 -6.47079 0.45135 1.17213 1.31844 1.39496 1.42971 1.56314 2.00383 2.12454 2.18509 2.40822 2.79282 3.27048 3.48415 3.69674 3.72019 3.90644 4.25974 4.34512 4.44346 4.46569 4.55476 4.60495 4.66305 4.92981 4.94739 5.04461 5.17645 5.31077 5.31628 5.46818 5.60625 5.83822 5.95728 6.01359 6.24512 6.28563 6.50901 6.55832 6.67522 6.78719 6.90560 7.05796 7.41660 8.16753 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.002879 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.284194 B = 9724.184333 C =10356.825822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.717 5.717 3 C 0.490 3.510 4 O -0.572 6.572 5 C 0.094 3.906 6 H 0.157 0.843 7 O -0.546 6.546 8 C 0.101 3.899 9 N -0.718 5.718 10 C 0.575 3.425 11 O -0.603 6.603 12 C -0.294 4.294 13 C -0.052 4.052 14 C -0.199 4.199 15 C 0.101 3.899 16 C -0.473 4.473 17 H 0.085 0.915 18 C 0.037 3.963 19 N -0.798 5.798 20 Si 0.987 3.013 21 H -0.257 1.257 22 H -0.260 1.260 23 H -0.265 1.265 24 C -0.255 4.255 25 C -0.031 4.031 26 H 0.053 0.947 27 H 0.112 0.888 28 H 0.050 0.950 29 H 0.420 0.580 30 H 0.392 0.608 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.411 0.589 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.297 0.703 37 H 0.103 0.897 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.971 -3.719 -6.802 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.370 5.370 3 C 0.275 3.725 4 O -0.452 6.452 5 C 0.031 3.969 6 H 0.174 0.826 7 O -0.352 6.352 8 C -0.024 4.024 9 N -0.371 5.371 10 C 0.368 3.632 11 O -0.488 6.488 12 C -0.298 4.298 13 C -0.071 4.071 14 C -0.219 4.219 15 C 0.098 3.902 16 C -0.500 4.500 17 H 0.103 0.897 18 C -0.182 4.182 19 N -0.421 5.421 20 Si 0.807 3.193 21 H -0.180 1.180 22 H -0.184 1.184 23 H -0.190 1.190 24 C -0.274 4.274 25 C -0.051 4.051 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.069 0.931 29 H 0.257 0.743 30 H 0.242 0.758 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.579 -3.272 -6.823 15.545 hybrid contribution 0.810 0.139 0.297 0.874 sum -12.770 -3.133 -6.526 14.679 Atomic orbital electron populations 1.21733 0.78453 1.04511 1.01613 1.45836 1.08779 1.08617 1.73783 1.21533 0.91079 0.84245 0.75660 1.90723 1.70598 1.32888 1.50943 1.22132 0.89023 0.86036 0.99746 0.82574 1.86585 1.75115 1.19816 1.53674 1.21865 0.80998 1.02564 0.96960 1.45558 1.06360 1.64292 1.20900 1.18333 0.87616 0.75786 0.81439 1.90626 1.70968 1.50650 1.36536 1.19156 0.91134 1.19441 1.00080 1.20736 0.94209 0.95972 0.96166 1.21019 0.93462 1.07918 0.99460 1.18144 0.94134 0.87655 0.90260 1.20135 0.91951 1.14906 1.22988 0.89704 1.26926 1.05932 0.92749 0.92559 1.69761 1.41053 1.07191 1.24104 0.85076 0.75227 0.79755 0.79266 1.18025 1.18429 1.18957 1.20860 0.93710 1.13340 0.99486 1.20511 0.93752 0.94672 0.96138 0.92778 0.86949 0.93117 0.74293 0.75803 0.92161 0.88955 0.75089 0.85825 0.86922 0.89197 0.87847 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.70 127.77 1.37 2.26 16 2 N -0.72 -9.30 5.67 -484.51 -2.75 -12.04 16 3 C 0.49 9.80 7.17 87.66 0.63 10.42 16 4 O -0.57 -16.37 16.32 15.95 0.26 -16.11 16 5 C 0.09 1.70 3.46 29.85 0.10 1.80 16 6 H 0.16 2.05 8.14 -2.39 -0.02 2.03 16 7 O -0.55 -12.32 12.74 -129.99 -1.66 -13.98 16 8 C 0.10 2.23 5.29 86.38 0.46 2.69 16 9 N -0.72 -20.69 5.40 -466.16 -2.52 -23.21 16 10 C 0.57 22.62 7.76 86.73 0.67 23.30 16 11 O -0.60 -26.95 16.32 -4.00 -0.07 -27.01 16 12 C -0.29 -12.91 5.89 -19.93 -0.12 -13.03 16 13 C -0.05 -2.21 9.47 22.25 0.21 -2.00 16 14 C -0.20 -9.69 8.63 22.47 0.19 -9.50 16 15 C 0.10 5.20 5.58 -21.28 -0.12 5.08 16 16 C -0.47 -23.64 9.04 23.46 0.21 -23.43 16 17 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 18 C 0.04 1.72 5.14 85.35 0.44 2.16 16 19 N -0.80 -37.92 10.95 21.87 0.24 -37.68 16 20 Si 0.99 34.49 29.60 68.60 2.03 36.52 16 21 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 22 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 23 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 24 C -0.25 -12.43 9.73 22.47 0.22 -12.21 16 25 C -0.03 -1.47 9.52 22.25 0.21 -1.26 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.42 2.97 8.61 -92.71 -0.80 2.17 16 30 H 0.39 7.94 8.79 -74.06 -0.65 7.28 16 31 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.09 1.78 7.92 -2.39 -0.02 1.76 16 33 H 0.41 10.77 6.35 -92.71 -0.59 10.18 16 34 H 0.12 4.30 6.37 -2.91 -0.02 4.28 16 35 H 0.11 5.58 6.16 -2.91 -0.02 5.56 16 36 H 0.30 12.51 8.29 -92.71 -0.77 11.74 16 37 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.10 4.70 7.63 -2.91 -0.02 4.67 16 Total: -1.00 -68.90 332.53 -0.88 -69.78 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.91 Total: 37.45 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 4.48 Total: -13.72 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -5.03 Total: -72.93 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -1.46 Total: -57.11 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Total: -68.90 -0.88 -69.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816327619.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.240 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds