Wall clock time and date at job start Tue Mar 31 2020 03:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47422 * 2 1 4 4 N 1.41597 * 114.00280 * 180.02562 * 3 2 1 5 5 C 1.34767 * 120.00303 * 180.02562 * 4 3 2 6 6 O 1.21291 * 120.00172 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00415 * 180.02562 * 5 4 3 8 8 N 1.46492 * 109.47433 * 179.97438 * 7 5 4 9 9 C 1.34777 * 120.00403 * 180.02562 * 8 7 5 10 10 O 1.21592 * 119.99740 * 0.02562 * 9 8 7 11 11 C 1.47639 * 120.00339 * 180.02562 * 9 8 7 12 12 C 1.40007 * 119.89573 * 0.24611 * 11 9 8 13 13 C 1.36318 * 120.10468 * 180.25591 * 12 11 9 14 14 C 1.40884 * 119.89177 * 359.47662 * 13 12 11 15 15 C 1.41116 * 120.10368 * 180.29746 * 14 13 12 16 16 H 1.07997 * 120.00134 * 154.53831 * 15 14 13 17 17 C 1.40227 * 119.99714 * 334.53632 * 15 14 13 18 18 N 1.30644 * 120.00033 * 343.04996 * 17 15 14 19 19 Si 1.86799 * 119.99848 * 163.05218 * 17 15 14 20 20 H 1.48501 * 109.47314 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47265 * 119.99809 * 19 17 15 22 22 H 1.48498 * 109.47305 * 239.99792 * 19 17 15 23 23 C 1.40889 * 119.79628 * 0.27580 * 14 13 12 24 24 C 1.36316 * 119.88883 * 359.97438 * 23 14 13 25 25 H 1.09006 * 109.47111 * 300.00060 * 1 2 3 26 26 H 1.09002 * 109.47164 * 59.99596 * 1 2 3 27 27 H 1.08992 * 109.47524 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46762 * 240.00183 * 2 1 3 29 29 H 1.08994 * 109.47370 * 120.00545 * 2 1 3 30 30 H 0.96998 * 119.99852 * 0.02562 * 4 3 2 31 31 H 1.09000 * 109.46601 * 59.99887 * 7 5 4 32 32 H 1.08994 * 109.47120 * 300.00566 * 7 5 4 33 33 H 0.97005 * 120.00342 * 359.97438 * 8 7 5 34 34 H 1.08000 * 119.95276 * 0.03420 * 12 11 9 35 35 H 1.08007 * 120.05277 * 179.74755 * 13 12 11 36 36 H 0.97005 * 119.99903 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.05358 * 180.02562 * 23 14 13 38 38 H 1.08002 * 119.94674 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 7 3.4180 1.4590 -0.0006 5 6 3.9976 2.6757 -0.0001 6 8 3.3102 3.6750 0.0013 7 6 5.4999 2.7947 -0.0013 8 7 5.8777 4.2101 -0.0011 9 6 7.1792 4.5603 -0.0026 10 8 8.0398 3.7013 -0.0046 11 6 7.5599 5.9867 -0.0019 12 6 6.5672 6.9739 0.0056 13 6 6.9139 8.2923 0.0010 14 6 8.2737 8.6607 0.0000 15 6 8.6376 10.0241 0.0016 16 1 9.5932 10.3275 0.4030 17 6 7.7584 10.9850 -0.5180 18 7 6.7715 10.6173 -1.2911 19 14 7.9984 12.7909 -0.1049 20 1 9.1791 12.9430 0.7828 21 1 8.2170 13.5601 -1.3562 22 1 6.7896 13.3052 0.5874 23 6 9.2691 7.6637 -0.0023 24 6 8.9127 6.3479 -0.0029 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9677 0.6599 -0.0013 31 1 5.9018 2.3118 -0.8920 32 1 5.9035 2.3104 0.8878 33 1 5.1912 4.8954 -0.0007 34 1 5.5250 6.6906 0.0113 35 1 6.1473 9.0532 0.0027 36 1 6.1631 11.2820 -1.6502 37 1 10.3128 7.9414 -0.0027 38 1 9.6750 5.5829 -0.0050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846494481.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:43 Heat of formation + Delta-G solvation = -53.734982 kcal Electronic energy + Delta-G solvation = -21827.265407 eV Core-core repulsion = 18250.520317 eV Total energy + Delta-G solvation = -3576.745090 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98460 -38.85609 -37.66558 -37.02043 -33.99309 -33.84646 -33.32138 -30.93648 -30.20470 -29.41989 -27.53780 -25.47071 -23.46634 -22.03654 -21.10388 -20.73809 -19.72027 -18.69510 -17.54922 -17.46145 -16.43490 -16.34197 -15.54882 -15.54399 -15.28999 -14.63338 -14.09705 -14.04322 -13.92742 -13.31031 -13.20091 -13.06467 -12.98984 -12.68725 -12.39146 -12.08562 -12.04999 -11.88608 -11.36803 -11.25485 -11.19482 -10.93097 -10.62835 -10.20537 -10.01766 -9.53467 -9.33762 -9.22076 -9.07069 -8.75124 -7.69046 -7.51989 -7.00354 -4.58297 1.50421 2.22368 2.38615 2.92450 2.97712 3.03062 3.07093 3.70917 3.76275 3.84760 4.09875 4.31584 4.48573 4.57542 4.61653 4.78992 5.21763 5.25857 5.28827 5.35916 5.59999 5.62111 6.01905 6.13284 6.33388 6.45962 6.70474 6.80691 6.85411 6.98611 7.06968 7.15653 7.46476 7.66557 7.81379 7.89063 7.97294 8.09472 8.19423 8.43098 8.65484 8.77697 8.99027 9.91624 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024920 B = 0.002720 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.330388 B =10291.276779 C =11322.010632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.027 3.973 3 O -0.144 6.144 4 N -0.599 5.599 5 C 0.520 3.480 6 O -0.512 6.512 7 C 0.120 3.880 8 N -0.732 5.732 9 C 0.577 3.423 10 O -0.577 6.577 11 C -0.284 4.284 12 C -0.061 4.061 13 C -0.177 4.177 14 C 0.129 3.871 15 C -0.441 4.441 16 H 0.085 0.915 17 C 0.073 3.927 18 N -0.771 5.771 19 Si 0.914 3.086 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.269 1.269 23 C -0.239 4.239 24 C -0.021 4.021 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.409 0.591 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.411 0.589 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.286 0.714 37 H 0.099 0.901 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 -15.433 1.608 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.051 4.051 3 O -0.148 6.148 4 N -0.302 5.302 5 C 0.307 3.693 6 O -0.384 6.384 7 C -0.008 4.008 8 N -0.390 5.390 9 C 0.373 3.627 10 O -0.459 6.459 11 C -0.289 4.289 12 C -0.080 4.080 13 C -0.196 4.196 14 C 0.125 3.875 15 C -0.469 4.469 16 H 0.104 0.896 17 C -0.148 4.148 18 N -0.394 5.394 19 Si 0.737 3.263 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.194 1.194 23 C -0.258 4.258 24 C -0.040 4.040 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.249 0.751 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.250 0.750 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.120 -15.035 1.454 17.645 hybrid contribution -0.295 0.295 0.008 0.417 sum -9.415 -14.740 1.462 17.552 Atomic orbital electron populations 1.21702 0.91787 1.03092 1.03923 1.23013 0.96666 0.84071 1.01338 1.90622 1.01266 1.25603 1.97338 1.47438 0.95199 1.08969 1.78621 1.20926 0.90408 0.81847 0.76154 1.90757 1.63989 1.35788 1.47911 1.20723 0.87960 0.87321 1.04816 1.45722 1.09124 1.05567 1.78557 1.18588 0.80330 0.89833 0.73974 1.90632 1.49617 1.52466 1.53206 1.18794 0.94454 0.89514 1.26111 1.20547 0.96130 0.93648 0.97708 1.20988 0.96793 0.94365 1.07477 1.17817 0.91560 0.92896 0.85181 1.19884 1.02775 0.91238 1.32986 0.89648 1.26115 0.93736 1.02459 0.92533 1.69749 1.12058 1.37377 1.20182 0.86161 0.79881 0.80744 0.79490 1.18076 1.19688 1.19386 1.20714 0.97998 0.92339 1.14767 1.20349 0.93882 0.95558 0.94211 0.91272 0.91269 0.90088 0.92003 0.92009 0.75084 0.88361 0.88359 0.75000 0.88993 0.86147 0.90233 0.88327 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.03 0.18 6.95 37.16 0.26 0.43 16 3 O -0.14 -1.66 11.11 -29.66 -0.33 -1.99 16 4 N -0.60 -6.11 6.39 31.22 0.20 -5.91 16 5 C 0.52 7.06 8.04 -10.99 -0.09 6.97 16 6 O -0.51 -9.28 16.07 -12.64 -0.20 -9.48 16 7 C 0.12 1.57 6.15 -5.20 -0.03 1.54 16 8 N -0.73 -12.87 5.48 -62.50 -0.34 -13.21 16 9 C 0.58 12.22 7.76 -12.42 -0.10 12.13 16 10 O -0.58 -13.12 16.32 5.29 0.09 -13.04 16 11 C -0.28 -6.59 5.89 -104.73 -0.62 -7.20 16 12 C -0.06 -1.41 9.47 -39.61 -0.38 -1.79 16 13 C -0.18 -4.45 8.63 -39.27 -0.34 -4.79 16 14 C 0.13 3.32 5.57 -106.80 -0.59 2.72 16 15 C -0.44 -11.07 9.05 -37.74 -0.34 -11.42 16 16 H 0.09 2.04 7.90 -52.49 -0.41 1.63 16 17 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 18 N -0.77 -18.83 10.95 55.56 0.61 -18.22 16 19 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 20 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.24 -5.80 9.73 -39.27 -0.38 -6.18 16 24 C -0.02 -0.49 9.52 -39.61 -0.38 -0.87 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.41 2.41 8.54 -40.82 -0.35 2.06 16 31 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.41 7.38 5.44 -40.82 -0.22 7.16 16 34 H 0.09 1.90 6.37 -52.49 -0.33 1.57 16 35 H 0.12 3.08 6.18 -52.48 -0.32 2.76 16 36 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 LS Contribution 334.85 15.07 5.05 5.05 Total: -1.00 -32.39 334.85 -7.22 -39.61 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.56 Total: 11.96 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -2.69 Total: -7.25 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.47 Total: -37.34 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.45 Total: -24.50 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.39 -7.22 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846494481.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.125 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds