Wall clock time and date at job start Tue Mar 31 2020 03:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99730 * 2 1 4 4 O 1.20826 * 120.00463 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99736 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.47199 * 180.02562 * 5 3 2 7 7 O 1.21273 * 120.00076 * 5.19737 * 6 5 3 8 8 N 1.34780 * 119.99640 * 185.19361 * 6 5 3 9 9 C 1.46493 * 120.00294 * 4.96524 * 8 6 5 10 10 C 1.50698 * 109.47371 * 277.11759 * 9 8 6 11 11 H 1.08003 * 119.99906 * 114.45452 * 10 9 8 12 12 C 1.37881 * 120.00291 * 294.45737 * 10 9 8 13 13 N 1.31518 * 119.99419 * 4.52605 * 12 10 9 14 14 Si 1.86797 * 120.00327 * 184.52712 * 12 10 9 15 15 H 1.48496 * 109.47174 * 89.99883 * 14 12 10 16 16 H 1.48495 * 109.47058 * 209.99894 * 14 12 10 17 17 H 1.48506 * 109.47117 * 330.00125 * 14 12 10 18 18 C 1.46502 * 119.99491 * 184.96780 * 8 6 5 19 19 C 1.50707 * 109.47046 * 275.57805 * 18 8 6 20 20 C 1.38674 * 120.41452 * 269.72204 * 19 18 8 21 21 C 1.38627 * 118.41584 * 179.78023 * 20 19 18 22 22 C 1.38225 * 119.16477 * 0.51705 * 21 20 19 23 23 N 1.31852 * 120.76026 * 359.72160 * 22 21 20 24 24 C 1.31889 * 121.72778 * 0.02562 * 23 22 21 25 25 H 1.08993 * 109.47338 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47048 * 300.00048 * 1 2 3 27 27 H 1.09004 * 109.47184 * 59.99651 * 1 2 3 28 28 H 1.09007 * 109.46986 * 60.00039 * 5 3 2 29 29 H 1.09002 * 109.47240 * 300.00520 * 5 3 2 30 30 H 1.09004 * 109.46671 * 157.12109 * 9 8 6 31 31 H 1.09000 * 109.47460 * 37.12363 * 9 8 6 32 32 H 0.97004 * 119.99492 * 174.99770 * 13 12 10 33 33 H 1.08994 * 109.47554 * 35.57595 * 18 8 6 34 34 H 1.08993 * 109.47209 * 155.58159 * 18 8 6 35 35 H 1.08001 * 120.79561 * 0.02562 * 20 19 18 36 36 H 1.08001 * 120.41978 * 180.21759 * 21 20 19 37 37 H 1.08000 * 119.62431 * 179.74582 * 22 21 20 38 38 H 1.08007 * 119.61851 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9936 2.7200 0.0011 7 8 3.1625 3.5981 0.0961 8 7 5.2995 3.0366 -0.1040 9 6 6.2928 1.9835 -0.3279 10 6 6.6551 1.3465 0.9890 11 1 6.4049 0.3126 1.1757 12 6 7.3061 2.0836 1.9554 13 7 7.5315 3.3651 1.7642 14 14 7.8677 1.2621 3.5363 15 1 9.2463 0.7392 3.3596 16 1 7.8522 2.2534 4.6418 17 1 6.9512 0.1406 3.8640 18 6 5.7254 4.4340 0.0057 19 6 5.5900 5.1073 -1.3358 20 6 6.6483 5.1061 -2.2319 21 6 6.4769 5.7337 -3.4560 22 6 5.2692 6.3449 -3.7364 23 7 4.2861 6.3304 -2.8579 24 6 4.4119 5.7388 -1.6859 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.9564 0.7806 -0.8892 29 1 3.9557 0.7809 0.8908 30 1 7.1854 2.4161 -0.7800 31 1 5.8775 1.2280 -0.9948 32 1 7.9237 3.8995 2.4724 33 1 5.0998 4.9484 0.7351 34 1 6.7659 4.4725 0.3280 35 1 7.5824 4.6242 -1.9837 36 1 7.2785 5.7492 -4.1796 37 1 5.1290 6.8396 -4.6862 38 1 3.5842 5.7473 -0.9920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906426899.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:41:19 Heat of formation + Delta-G solvation = -93.519375 kcal Electronic energy + Delta-G solvation = -23749.841202 eV Core-core repulsion = 20171.370932 eV Total energy + Delta-G solvation = -3578.470271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69138 -41.07797 -39.96739 -37.46019 -36.63915 -34.46788 -33.53734 -32.75664 -31.59764 -29.40122 -28.39619 -26.79610 -24.91836 -24.26303 -23.31136 -22.23460 -20.07063 -18.93077 -18.32084 -17.87602 -17.65185 -17.48140 -17.28181 -16.84240 -16.45338 -16.32008 -16.14102 -15.54027 -14.74875 -14.57189 -14.26356 -14.19096 -14.02522 -13.97856 -13.88020 -13.69312 -12.95975 -12.91276 -12.77907 -12.71751 -12.57955 -12.29824 -11.74617 -11.69483 -11.57816 -11.36235 -10.81151 -10.63042 -10.44214 -10.33822 -9.83038 -9.05992 -8.10129 -6.31109 0.22545 0.40797 1.23914 1.45235 1.51675 1.56802 1.63568 1.93184 2.43828 2.63703 3.03713 3.22529 3.60209 3.73461 4.02262 4.07873 4.13659 4.24225 4.25352 4.28158 4.34585 4.35563 4.53381 4.66177 4.71227 4.85994 4.91708 4.95790 5.21262 5.29888 5.36560 5.40549 5.54055 5.86008 5.89751 6.08656 6.14883 6.66909 6.82294 7.05919 7.09406 7.45425 7.58421 8.86799 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.008859 B = 0.008024 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.994442 B = 3488.847986 C = 6146.559799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.507 6.507 5 C -0.121 4.121 6 C 0.496 3.504 7 O -0.576 6.576 8 N -0.566 5.566 9 C 0.227 3.773 10 C -0.550 4.550 11 H 0.071 0.929 12 C 0.037 3.963 13 N -0.894 5.894 14 Si 0.949 3.051 15 H -0.274 1.274 16 H -0.296 1.296 17 H -0.270 1.270 18 C 0.163 3.837 19 C -0.152 4.152 20 C -0.067 4.067 21 C -0.165 4.165 22 C 0.080 3.920 23 N -0.518 5.518 24 C 0.096 3.904 25 H 0.138 0.862 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.265 0.735 33 H 0.033 0.967 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.185 0.815 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 -4.182 -7.461 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.394 6.394 5 C -0.161 4.161 6 C 0.283 3.717 7 O -0.457 6.457 8 N -0.295 5.295 9 C 0.108 3.892 10 C -0.589 4.589 11 H 0.089 0.911 12 C -0.165 4.165 13 N -0.532 5.532 14 Si 0.776 3.224 15 H -0.200 1.200 16 H -0.223 1.223 17 H -0.194 1.194 18 C 0.040 3.960 19 C -0.155 4.155 20 C -0.093 4.093 21 C -0.184 4.184 22 C -0.077 4.077 23 N -0.227 5.227 24 C -0.060 4.060 25 H 0.156 0.844 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.168 0.832 29 H 0.164 0.836 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.190 0.810 37 H 0.202 0.798 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.136 -2.912 -7.553 8.681 hybrid contribution 0.737 -0.426 1.563 1.780 sum -2.399 -3.339 -5.990 7.265 Atomic orbital electron populations 1.23525 0.74953 1.05724 1.02175 1.86486 1.24858 1.32246 1.84302 1.23488 0.91967 0.81490 0.72744 1.90771 1.67250 1.37029 1.44350 1.21250 0.88203 0.96953 1.09645 1.20295 0.83168 0.90585 0.77611 1.90696 1.52071 1.50762 1.52131 1.48603 1.05551 1.07740 1.67623 1.19462 0.88060 0.86141 0.95550 1.21834 1.36916 0.98395 1.01714 0.91072 1.25606 0.94525 0.95253 1.01121 1.69587 1.43470 1.06438 1.33669 0.85699 0.78937 0.78277 0.79473 1.19976 1.22290 1.19428 1.20591 1.04521 0.80842 0.90083 1.21635 0.95141 0.99260 0.99469 1.21769 0.98474 0.95971 0.93111 1.22476 0.99829 0.98481 0.97601 1.23341 0.89024 0.96545 0.98803 1.67661 1.33605 1.18244 1.03175 1.22605 0.96443 0.93624 0.93318 0.84351 0.92568 0.92314 0.83162 0.83565 0.94516 0.92782 0.92571 0.94865 0.84644 0.83836 0.81049 0.79763 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.56 113.37 1.20 1.85 16 2 O -0.36 -10.62 10.57 -51.42 -0.54 -11.16 16 3 C 0.46 16.86 7.95 71.24 0.57 17.43 16 4 O -0.51 -22.80 13.95 29.71 0.41 -22.39 16 5 C -0.12 -4.25 5.03 29.10 0.15 -4.10 16 6 C 0.50 21.97 7.53 87.66 0.66 22.63 16 7 O -0.58 -29.57 12.43 20.40 0.25 -29.31 16 8 N -0.57 -24.43 2.36 -830.52 -1.96 -26.39 16 9 C 0.23 9.24 5.17 85.63 0.44 9.68 16 10 C -0.55 -24.44 8.62 25.60 0.22 -24.22 16 11 H 0.07 3.02 7.82 -2.91 -0.02 3.00 16 12 C 0.04 1.75 5.43 84.66 0.46 2.21 16 13 N -0.89 -43.23 9.66 21.45 0.21 -43.03 16 14 Si 0.95 38.44 29.54 68.60 2.03 40.46 16 15 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 16 H -0.30 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 18 C 0.16 7.17 4.66 85.63 0.40 7.57 16 19 C -0.15 -5.94 5.43 -19.77 -0.11 -6.04 16 20 C -0.07 -2.14 9.86 22.47 0.22 -1.92 16 21 C -0.16 -4.25 10.11 22.36 0.23 -4.03 16 22 C 0.08 2.28 11.18 84.69 0.95 3.23 16 23 N -0.52 -19.38 10.36 -195.84 -2.03 -21.41 16 24 C 0.10 3.98 10.37 84.67 0.88 4.86 16 25 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 1.30 8.13 -2.38 -0.02 1.28 16 27 H 0.06 1.32 8.13 -2.38 -0.02 1.30 16 28 H 0.15 4.29 7.04 -2.38 -0.02 4.28 16 29 H 0.15 4.91 7.64 -2.39 -0.02 4.89 16 30 H 0.04 1.55 8.01 -2.38 -0.02 1.53 16 31 H 0.05 1.89 6.66 -2.39 -0.02 1.87 16 32 H 0.26 12.58 8.32 -92.71 -0.77 11.80 16 33 H 0.03 1.61 7.62 -2.39 -0.02 1.59 16 34 H 0.14 6.21 5.19 -2.39 -0.01 6.20 16 35 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.13 6.00 7.06 -2.91 -0.02 5.98 16 Total: -1.00 -65.29 326.03 5.71 -59.59 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 1.08 Total: 24.50 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 6.26 Total: 29.14 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.78 Total: -90.82 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: 0.12 Total: -62.87 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.46 kcal Total: -65.29 5.71 -59.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906426899.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.934 kcal (2) G-P(sol) polarization free energy of solvation -65.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds