Wall clock time and date at job start Tue Mar 31 2020 03:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47638 * 270.00319 * 3 2 1 5 5 H 1.48499 * 109.47111 * 30.00647 * 3 2 1 6 6 H 1.48502 * 109.47075 * 150.00297 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00264 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64602 * 180.02562 * 9 7 2 11 11 C 1.54326 * 107.26769 * 178.90755 * 10 9 7 12 12 H 1.08996 * 110.72236 * 96.34633 * 11 10 9 13 13 C 1.53004 * 110.71890 * 219.44083 * 11 10 9 14 14 N 1.46500 * 109.46942 * 293.54864 * 13 11 10 15 15 C 1.34779 * 120.00282 * 180.02562 * 14 13 11 16 16 O 1.21518 * 119.99343 * 359.97438 * 15 14 13 17 17 C 1.48150 * 120.00378 * 179.97438 * 15 14 13 18 18 C 1.39439 * 120.09495 * 179.97438 * 17 15 14 19 19 N 1.32085 * 119.86989 * 180.02562 * 18 17 15 20 20 C 1.32137 * 120.07291 * 359.96788 * 19 18 17 21 21 C 1.38724 * 120.19376 * 0.03316 * 20 19 18 22 22 N 1.31804 * 120.12955 * 359.97438 * 21 20 19 23 23 C 1.55153 * 102.94456 * 337.80128 * 11 10 9 24 24 H 1.08999 * 111.00431 * 277.43559 * 23 11 10 25 25 O 1.42897 * 111.00544 * 153.57521 * 23 11 10 26 26 C 1.47417 * 125.64973 * 359.96394 * 9 7 2 27 27 H 0.96996 * 119.99842 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.88835 * 59.48337 * 10 9 7 29 29 H 1.09003 * 110.00887 * 298.38944 * 10 9 7 30 30 H 1.08993 * 109.47299 * 173.54972 * 13 11 10 31 31 H 1.09002 * 109.47097 * 53.54013 * 13 11 10 32 32 H 0.97003 * 120.00625 * 359.97438 * 14 13 11 33 33 H 1.08006 * 120.06807 * 0.03986 * 18 17 15 34 34 H 1.07997 * 119.90289 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.93805 * 179.97438 * 21 20 19 36 36 H 0.96702 * 114.00234 * 179.97438 * 25 23 11 37 37 H 1.09000 * 110.36829 * 323.00072 * 26 9 7 38 38 H 1.08995 * 110.37198 * 85.21095 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.9318 -3.7275 -0.0005 11 6 0.7784 -4.7524 0.0276 12 1 0.5474 -5.1008 -0.9791 13 6 1.1237 -5.9310 0.9401 14 7 2.2392 -6.6851 0.3629 15 6 2.7172 -7.7735 0.9980 16 8 2.2231 -8.1290 2.0498 17 6 3.8449 -8.5364 0.4140 18 6 4.3413 -9.6624 1.0698 19 7 5.3471 -10.3391 0.5453 20 6 5.8817 -9.9502 -0.5988 21 6 5.3901 -8.8303 -1.2536 22 7 4.3867 -8.1493 -0.7372 23 6 -0.4012 -3.9321 0.6130 24 1 -0.3509 -3.8975 1.7013 25 8 -1.6566 -4.4572 0.1767 26 6 -0.1414 -2.5332 0.0008 27 1 -0.4850 0.8400 0.0004 28 1 2.5589 -3.8507 0.8824 29 1 2.5293 -3.8664 -0.9016 30 1 0.2555 -6.5829 1.0359 31 1 1.4081 -5.5576 1.9239 32 1 2.6334 -6.4016 -0.4769 33 1 3.9040 -9.9809 2.0046 34 1 6.7038 -10.5057 -1.0253 35 1 5.8304 -8.5159 -2.1883 36 1 -2.4237 -3.9771 0.5175 37 1 -0.5987 -1.7587 0.6166 38 1 -0.5284 -2.4851 -1.0171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957833582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:19 Heat of formation + Delta-G solvation = -4.425105 kcal Electronic energy + Delta-G solvation = -22727.419311 eV Core-core repulsion = 19185.105209 eV Total energy + Delta-G solvation = -3542.314102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.53840 -39.50170 -38.18164 -35.27866 -34.92329 -34.49690 -32.36630 -31.94299 -29.74727 -27.63771 -26.17331 -25.26254 -24.76622 -23.33737 -21.17887 -20.30309 -19.86432 -18.34267 -17.90339 -17.15961 -17.03357 -16.65547 -15.78695 -15.70328 -15.31710 -14.99554 -14.72500 -14.16378 -13.99176 -13.71930 -13.17033 -13.03112 -12.87522 -12.42550 -12.09032 -11.97326 -11.69035 -11.56519 -11.27014 -11.00354 -10.83422 -10.66260 -10.53684 -10.08115 -9.92773 -9.84024 -9.71290 -9.49270 -9.17967 -9.03175 -8.72687 -6.93107 -5.73400 -3.15902 0.04457 0.65908 2.53374 2.90526 3.36065 3.41103 3.43019 3.47545 3.65678 3.80843 4.06615 4.39049 4.49795 4.69288 4.76317 4.85160 5.02273 5.13422 5.21656 5.42087 5.46505 5.64557 5.86182 5.90269 5.99230 6.02227 6.17319 6.31868 6.41409 6.56995 6.72219 6.79009 7.19840 7.33693 7.47834 7.52544 7.72293 8.03589 8.13987 8.26893 9.12889 9.73659 10.36755 11.30668 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.003445 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.923224 B = 8126.398838 C = 9109.868920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.141 3.859 11 C -0.105 4.105 12 H 0.087 0.913 13 C 0.131 3.869 14 N -0.700 5.700 15 C 0.571 3.429 16 O -0.531 6.531 17 C 0.034 3.966 18 C 0.108 3.892 19 N -0.441 5.441 20 C 0.069 3.931 21 C 0.051 3.949 22 N -0.411 5.411 23 C 0.082 3.918 24 H 0.061 0.939 25 O -0.569 6.569 26 C 0.128 3.872 27 H 0.253 0.747 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.184 0.816 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.377 0.623 37 H 0.109 0.891 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.930 -17.243 -1.471 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.124 4.124 12 H 0.106 0.894 13 C 0.008 3.992 14 N -0.350 5.350 15 C 0.354 3.646 16 O -0.408 6.408 17 C -0.107 4.107 18 C -0.052 4.052 19 N -0.155 5.155 20 C -0.092 4.092 21 C -0.111 4.111 22 N -0.128 5.128 23 C 0.021 3.979 24 H 0.079 0.921 25 O -0.374 6.374 26 C 0.003 3.997 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.248 0.752 33 H 0.201 0.799 34 H 0.193 0.807 35 H 0.196 0.804 36 H 0.224 0.776 37 H 0.127 0.873 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.872 -17.654 -0.981 18.970 hybrid contribution 0.440 1.406 -0.371 1.519 sum 7.312 -16.248 -1.352 17.868 Atomic orbital electron populations 1.69760 1.04943 1.24938 1.57500 1.24803 0.95769 0.97840 1.02190 0.86036 0.78534 0.83094 0.77613 1.21552 1.21594 1.20633 1.19095 0.90562 0.82256 1.43340 0.90277 1.44313 1.01603 0.99819 1.87068 1.21364 0.93283 0.85465 0.98408 1.22409 0.96310 0.94070 0.99659 0.89450 1.21549 0.88215 0.92407 0.97063 1.45914 1.35234 1.27303 1.26530 1.17620 0.81910 0.80822 0.84249 1.90808 1.59332 1.68561 1.22099 1.22286 0.98218 0.96721 0.93506 1.23862 0.91125 0.90284 0.99904 1.68636 1.07823 1.28717 1.10322 1.24122 0.98674 0.95001 0.91403 1.23898 0.93195 0.92986 1.01012 1.68383 1.07423 1.28274 1.08766 1.23304 0.82104 0.95477 0.96974 0.92060 1.86368 1.15726 1.58958 1.76337 1.22540 0.85339 0.92521 0.99323 0.93618 0.95356 0.95621 0.90741 0.90844 0.75162 0.79949 0.80677 0.80437 0.77593 0.87306 0.95957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.09 55.49 0.56 -25.72 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -15.04 3.39 -170.08 -0.58 -15.62 16 10 C 0.14 2.84 6.52 -3.06 -0.02 2.82 16 11 C -0.11 -1.82 2.75 -88.78 -0.24 -2.06 16 12 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 13 C 0.13 2.00 4.99 -4.04 -0.02 1.98 16 14 N -0.70 -9.76 5.39 -61.15 -0.33 -10.08 16 15 C 0.57 8.13 7.81 -12.19 -0.10 8.03 16 16 O -0.53 -8.81 16.35 5.35 0.09 -8.72 16 17 C 0.03 0.41 6.75 -82.85 -0.56 -0.15 16 18 C 0.11 1.17 10.77 -17.00 -0.18 0.98 16 19 N -0.44 -4.36 10.49 -12.71 -0.13 -4.49 16 20 C 0.07 0.49 11.23 -17.24 -0.19 0.29 16 21 C 0.05 0.39 11.22 -17.38 -0.20 0.19 16 22 N -0.41 -4.46 9.71 -9.62 -0.09 -4.55 16 23 C 0.08 1.53 3.88 -24.59 -0.10 1.44 16 24 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 25 O -0.57 -9.68 13.47 -35.23 -0.47 -10.15 16 26 C 0.13 3.03 5.62 -2.54 -0.01 3.01 16 27 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.03 0.57 7.76 -51.93 -0.40 0.17 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 32 H 0.41 5.38 7.68 -40.82 -0.31 5.06 16 33 H 0.18 1.80 7.65 -52.48 -0.40 1.40 16 34 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.38 4.96 9.12 45.56 0.42 5.38 16 37 H 0.11 2.85 5.87 -51.93 -0.31 2.55 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -33.23 326.11 -6.87 -40.09 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.93 Total: 7.81 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -1.87 Total: 9.84 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.57 Total: -60.47 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.39 Total: -18.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.23 -6.87 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957833582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.670 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds