Wall clock time and date at job start Tue Mar 31 2020 03:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00036 * 2 1 4 4 H 1.48496 * 109.47638 * 270.00319 * 3 2 1 5 5 H 1.48499 * 109.47111 * 30.00647 * 3 2 1 6 6 H 1.48502 * 109.47075 * 150.00297 * 3 2 1 7 7 C 1.38811 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00264 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64602 * 180.02562 * 9 7 2 11 11 C 1.54326 * 107.26769 * 178.90755 * 10 9 7 12 12 H 1.08996 * 110.72236 * 96.34633 * 11 10 9 13 13 C 1.53004 * 110.71890 * 219.44083 * 11 10 9 14 14 N 1.46500 * 109.46942 * 293.54864 * 13 11 10 15 15 C 1.34779 * 120.00282 * 180.02562 * 14 13 11 16 16 O 1.21518 * 119.99343 * 359.97438 * 15 14 13 17 17 C 1.48150 * 120.00378 * 179.97438 * 15 14 13 18 18 C 1.39439 * 120.09495 * 179.97438 * 17 15 14 19 19 N 1.32085 * 119.86989 * 180.02562 * 18 17 15 20 20 C 1.32137 * 120.07291 * 359.96788 * 19 18 17 21 21 C 1.38724 * 120.19376 * 0.03316 * 20 19 18 22 22 N 1.31804 * 120.12955 * 359.97438 * 21 20 19 23 23 C 1.55153 * 102.94456 * 337.80128 * 11 10 9 24 24 H 1.08999 * 111.00431 * 277.43559 * 23 11 10 25 25 O 1.42897 * 111.00544 * 153.57521 * 23 11 10 26 26 C 1.47417 * 125.64973 * 359.96394 * 9 7 2 27 27 H 0.96996 * 119.99842 * 359.97438 * 1 2 3 28 28 H 1.08991 * 109.88835 * 59.48337 * 10 9 7 29 29 H 1.09003 * 110.00887 * 298.38944 * 10 9 7 30 30 H 1.08993 * 109.47299 * 173.54972 * 13 11 10 31 31 H 1.09002 * 109.47097 * 53.54013 * 13 11 10 32 32 H 0.97003 * 120.00625 * 359.97438 * 14 13 11 33 33 H 1.08006 * 120.06807 * 0.03986 * 18 17 15 34 34 H 1.07997 * 119.90289 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.93805 * 179.97438 * 21 20 19 36 36 H 0.96702 * 114.00234 * 179.97438 * 25 23 11 37 37 H 1.09000 * 110.36829 * 323.00072 * 26 9 7 38 38 H 1.08995 * 110.37198 * 85.21095 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.9318 -3.7275 -0.0005 11 6 0.7784 -4.7524 0.0276 12 1 0.5474 -5.1008 -0.9791 13 6 1.1237 -5.9310 0.9401 14 7 2.2392 -6.6851 0.3629 15 6 2.7172 -7.7735 0.9980 16 8 2.2231 -8.1290 2.0498 17 6 3.8449 -8.5364 0.4140 18 6 4.3413 -9.6624 1.0698 19 7 5.3471 -10.3391 0.5453 20 6 5.8817 -9.9502 -0.5988 21 6 5.3901 -8.8303 -1.2536 22 7 4.3867 -8.1493 -0.7372 23 6 -0.4012 -3.9321 0.6130 24 1 -0.3509 -3.8975 1.7013 25 8 -1.6566 -4.4572 0.1767 26 6 -0.1414 -2.5332 0.0008 27 1 -0.4850 0.8400 0.0004 28 1 2.5589 -3.8507 0.8824 29 1 2.5293 -3.8664 -0.9016 30 1 0.2555 -6.5829 1.0359 31 1 1.4081 -5.5576 1.9239 32 1 2.6334 -6.4016 -0.4769 33 1 3.9040 -9.9809 2.0046 34 1 6.7038 -10.5057 -1.0253 35 1 5.8304 -8.5159 -2.1883 36 1 -2.4237 -3.9771 0.5175 37 1 -0.5987 -1.7587 0.6166 38 1 -0.5284 -2.4851 -1.0171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957833582.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:18 Heat of formation + Delta-G solvation = -32.205816 kcal Electronic energy + Delta-G solvation = -22728.623973 eV Core-core repulsion = 19185.105209 eV Total energy + Delta-G solvation = -3543.518764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.29672 -40.65982 -39.68336 -36.67450 -36.26869 -35.44106 -34.02244 -32.82196 -31.37543 -29.33423 -27.54580 -26.48342 -25.64265 -24.73720 -22.53326 -21.79098 -21.34269 -19.41544 -18.85876 -18.72899 -18.20803 -17.74568 -17.07409 -16.84119 -16.72834 -16.05932 -15.88007 -15.61088 -15.31964 -14.94371 -14.75249 -14.33998 -14.04917 -13.86714 -13.68469 -13.27681 -13.11379 -12.80231 -12.76569 -12.44473 -12.40332 -12.33116 -11.92031 -11.87800 -11.66093 -11.30417 -10.85006 -10.74339 -10.57909 -10.21595 -10.18114 -8.93629 -7.80487 -5.25896 -0.69680 -0.02588 1.47445 1.48783 1.57602 1.58282 1.87007 2.47130 2.70511 2.87582 3.17073 3.20697 3.29959 3.37456 3.57361 3.67753 3.80301 3.89911 4.08617 4.08836 4.31583 4.40988 4.44635 4.52986 4.58284 4.70052 4.86148 4.94706 5.18850 5.25316 5.29741 5.42156 5.47394 5.72925 6.02143 6.23926 6.30528 6.61802 6.88725 6.96077 7.06905 7.72791 8.35479 9.21383 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.003445 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.923224 B = 8126.398838 C = 9109.868920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.065 4.065 3 Si 0.982 3.018 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.623 5.623 10 C 0.140 3.860 11 C -0.089 4.089 12 H 0.091 0.909 13 C 0.144 3.856 14 N -0.697 5.697 15 C 0.572 3.428 16 O -0.562 6.562 17 C 0.010 3.990 18 C 0.102 3.898 19 N -0.459 5.459 20 C 0.087 3.913 21 C 0.057 3.943 22 N -0.430 5.430 23 C 0.098 3.902 24 H 0.070 0.930 25 O -0.569 6.569 26 C 0.133 3.867 27 H 0.248 0.752 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.417 0.583 33 H 0.181 0.819 34 H 0.221 0.779 35 H 0.218 0.782 36 H 0.395 0.605 37 H 0.080 0.920 38 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.851 -18.602 -2.348 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.810 3.190 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.101 0.899 9 N -0.350 5.350 10 C 0.015 3.985 11 C -0.108 4.108 12 H 0.109 0.891 13 C 0.020 3.980 14 N -0.347 5.347 15 C 0.356 3.644 16 O -0.441 6.441 17 C -0.129 4.129 18 C -0.056 4.056 19 N -0.174 5.174 20 C -0.075 4.075 21 C -0.106 4.106 22 N -0.148 5.148 23 C 0.038 3.962 24 H 0.088 0.912 25 O -0.376 6.376 26 C 0.007 3.993 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.254 0.746 33 H 0.198 0.802 34 H 0.237 0.763 35 H 0.234 0.766 36 H 0.244 0.756 37 H 0.098 0.902 38 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 8.775 -19.032 -1.840 21.038 hybrid contribution -0.059 1.754 -0.210 1.768 sum 8.717 -17.278 -2.051 19.460 Atomic orbital electron populations 1.70002 1.06193 1.25182 1.58396 1.25639 0.96677 1.01018 1.02447 0.85028 0.77641 0.78913 0.77434 1.21373 1.21923 1.19401 1.19470 0.91110 0.83522 1.42882 0.89872 1.44596 1.02382 1.01010 1.87039 1.21487 0.94256 0.84047 0.98679 1.22232 0.94498 0.93793 1.00258 0.89063 1.21286 0.88903 0.91654 0.96131 1.45814 1.34922 1.27297 1.26701 1.17951 0.82129 0.80520 0.83760 1.90779 1.60536 1.69349 1.23431 1.21874 0.98689 0.97514 0.94837 1.23830 0.91577 0.90142 1.00014 1.68707 1.07869 1.29028 1.11769 1.24909 0.98356 0.94415 0.89818 1.24628 0.91748 0.92387 1.01866 1.68340 1.08704 1.29308 1.08472 1.22973 0.83435 0.92794 0.97044 0.91183 1.86343 1.15779 1.58882 1.76551 1.22324 0.84772 0.94851 0.97310 0.94195 0.95051 0.94848 0.90409 0.91463 0.74569 0.80181 0.76291 0.76561 0.75573 0.90208 0.98981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.35 10.09 21.65 0.22 -55.13 16 2 C -0.07 -3.64 5.49 84.86 0.47 -3.17 16 3 Si 0.98 44.90 29.55 68.60 2.03 46.93 16 4 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.24 -13.31 10.27 84.03 0.86 -12.44 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 9 N -0.62 -31.55 3.39 -692.03 -2.35 -33.90 16 10 C 0.14 5.59 6.52 86.73 0.57 6.16 16 11 C -0.09 -2.99 2.75 -9.60 -0.03 -3.02 16 12 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 13 C 0.14 4.27 4.99 86.38 0.43 4.70 16 14 N -0.70 -18.94 5.39 -465.67 -2.51 -21.45 16 15 C 0.57 16.16 7.81 86.88 0.68 16.84 16 16 O -0.56 -18.81 16.35 -3.77 -0.06 -18.87 16 17 C 0.01 0.23 6.75 41.89 0.28 0.51 16 18 C 0.10 2.15 10.77 84.94 0.92 3.06 16 19 N -0.46 -8.14 10.49 -194.12 -2.04 -10.18 16 20 C 0.09 0.91 11.23 84.76 0.95 1.86 16 21 C 0.06 0.66 11.22 84.81 0.95 1.61 16 22 N -0.43 -8.52 9.71 -184.34 -1.79 -10.31 16 23 C 0.10 3.64 3.88 31.98 0.12 3.77 16 24 H 0.07 2.51 8.05 -2.39 -0.02 2.49 16 25 O -0.57 -18.73 13.47 -148.98 -2.01 -20.74 16 26 C 0.13 6.44 5.62 86.85 0.49 6.93 16 27 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 28 H 0.03 1.24 7.76 -2.39 -0.02 1.22 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.10 8.06 -2.39 -0.02 2.08 16 32 H 0.42 10.46 7.68 -92.71 -0.71 9.75 16 33 H 0.18 3.64 7.65 -2.91 -0.02 3.62 16 34 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.22 0.66 8.06 -2.91 -0.02 0.63 16 36 H 0.39 9.98 9.12 -74.06 -0.68 9.30 16 37 H 0.08 4.34 5.87 -2.39 -0.01 4.32 16 38 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -73.25 326.11 -2.10 -75.34 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.28 Total: 21.50 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 6.69 Total: 26.81 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -8.47 Total: -130.97 kcal Atomic # 8 Polarization: -37.54 SS G_CDS: -2.07 Total: -39.60 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -73.25 -2.10 -75.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957833582.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.136 kcal (2) G-P(sol) polarization free energy of solvation -73.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds