Wall clock time and date at job start Tue Mar 31 2020 03:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00205 * 2 1 4 4 H 1.48501 * 109.47137 * 274.13586 * 3 2 1 5 5 H 1.48495 * 109.47162 * 34.14068 * 3 2 1 6 6 H 1.48512 * 109.46981 * 154.13821 * 3 2 1 7 7 C 1.38816 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00172 * 170.42257 * 7 2 1 9 9 N 1.36933 * 120.00055 * 350.41978 * 7 2 1 10 10 C 1.47427 * 125.65012 * 349.98857 * 9 7 2 11 11 C 1.55126 * 104.94167 * 203.96336 * 10 9 7 12 12 H 1.08999 * 111.16118 * 205.12761 * 11 10 9 13 13 O 1.42903 * 110.93078 * 81.21725 * 11 10 9 14 14 C 1.55153 * 101.48489 * 323.22329 * 11 10 9 15 15 H 1.09002 * 110.71944 * 276.82724 * 14 11 10 16 16 C 1.53003 * 110.71436 * 153.73471 * 14 11 10 17 17 N 1.46503 * 109.46854 * 177.43734 * 16 14 11 18 18 C 1.34782 * 120.00262 * 179.97438 * 17 16 14 19 19 O 1.21482 * 119.99556 * 0.02562 * 18 17 16 20 20 C 1.48455 * 120.00162 * 180.02562 * 18 17 16 21 21 C 1.39528 * 120.54851 * 179.97438 * 20 18 17 22 22 C 1.38757 * 118.26712 * 179.72554 * 21 20 18 23 23 N 1.32211 * 119.14203 * 0.02562 * 22 21 20 24 24 C 1.31881 * 121.03832 * 359.97438 * 23 22 21 25 25 N 1.31577 * 121.91440 * 359.97438 * 24 23 22 26 26 C 1.47029 * 125.64634 * 169.94442 * 9 7 2 27 27 H 0.96998 * 119.99635 * 0.02562 * 1 2 3 28 28 H 1.08997 * 110.36529 * 322.92986 * 10 9 7 29 29 H 1.09000 * 110.36459 * 85.14343 * 10 9 7 30 30 H 0.96698 * 114.00379 * 67.96129 * 13 11 10 31 31 H 1.08998 * 109.47518 * 57.44383 * 16 14 11 32 32 H 1.08996 * 109.47673 * 297.43724 * 16 14 11 33 33 H 0.97002 * 120.00397 * 0.02562 * 17 16 14 34 34 H 1.07998 * 120.86945 * 359.74674 * 21 20 18 35 35 H 1.07997 * 120.43410 * 180.02562 * 22 21 20 36 36 H 1.07999 * 119.04237 * 179.97438 * 24 23 22 37 37 H 1.08991 * 109.88300 * 59.56233 * 26 9 7 38 38 H 1.08999 * 109.88266 * 298.39398 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4103 2.0968 -1.3964 5 1 1.4943 2.6257 0.7857 6 1 3.5889 1.4163 0.6108 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2089 -0.1551 9 7 1.3398 -2.3797 0.1984 10 6 -0.0654 -2.5071 0.6259 11 6 -0.1581 -3.9093 1.2829 12 1 -1.1755 -4.2978 1.2391 13 8 0.3170 -3.8741 2.6302 14 6 0.7930 -4.7374 0.3791 15 1 0.2745 -5.0768 -0.5176 16 6 1.3730 -5.9255 1.1491 17 7 2.2171 -6.7219 0.2548 18 6 2.8374 -7.8250 0.7185 19 8 2.6962 -8.1591 1.8778 20 6 3.6931 -8.6316 -0.1876 21 6 4.3410 -9.7753 0.2804 22 6 5.1245 -10.4970 -0.6087 23 7 5.2303 -10.0798 -1.8588 24 6 4.6042 -8.9939 -2.2686 25 7 3.8501 -8.2792 -1.4612 26 6 1.9019 -3.7264 0.0189 27 1 -0.4849 0.8401 -0.0004 28 1 -0.3136 -1.7308 1.3496 29 1 -0.7307 -2.4484 -0.2356 30 1 -0.2450 -3.3677 3.2324 31 1 0.5600 -6.5447 1.5282 32 1 1.9713 -5.5604 1.9838 33 1 2.3301 -6.4549 -0.6709 34 1 4.2351 -10.0908 1.3078 35 1 5.6413 -11.3879 -0.2839 36 1 4.7136 -8.6821 -3.2968 37 1 2.7569 -3.8625 0.6810 38 1 2.2076 -3.8653 -1.0181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958493887.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:06 Heat of formation + Delta-G solvation = -3.109143 kcal Electronic energy + Delta-G solvation = -22825.649053 eV Core-core repulsion = 19283.392016 eV Total energy + Delta-G solvation = -3542.257038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45737 -39.52144 -38.24513 -35.06078 -34.59813 -34.12940 -32.41375 -32.13177 -29.79083 -27.83520 -26.26440 -25.12315 -24.65315 -23.34835 -21.22018 -20.33932 -19.77901 -18.46328 -17.91021 -17.30260 -16.44098 -15.79562 -15.77837 -15.68640 -15.48659 -14.88631 -14.71721 -14.13874 -14.05643 -13.87815 -13.81544 -13.21972 -12.72398 -12.40831 -11.96690 -11.52869 -11.32186 -11.15575 -11.14553 -10.82090 -10.67709 -10.63728 -10.42973 -10.14230 -10.10492 -10.04748 -9.83472 -9.61112 -9.16900 -9.01587 -8.63156 -6.81440 -5.78110 -3.09318 0.19488 0.56928 2.60191 2.88461 3.38287 3.44383 3.46794 3.54778 3.64950 3.77322 4.28808 4.46909 4.55412 4.66681 4.69203 5.08898 5.17616 5.26680 5.28342 5.37966 5.46151 5.58768 5.85336 5.89566 5.98247 6.07524 6.27929 6.34321 6.40533 6.49033 6.63758 6.84019 7.29905 7.38829 7.43924 7.63428 7.71368 8.03552 8.16739 8.28067 9.16120 9.78256 10.44945 11.35400 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.003402 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.047970 B = 8227.936423 C = 9042.931533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.596 5.596 10 C 0.148 3.852 11 C 0.081 3.919 12 H 0.058 0.942 13 O -0.558 6.558 14 C -0.106 4.106 15 H 0.088 0.912 16 C 0.137 3.863 17 N -0.699 5.699 18 C 0.564 3.436 19 O -0.528 6.528 20 C 0.136 3.864 21 C -0.171 4.171 22 C 0.149 3.851 23 N -0.510 5.510 24 C 0.295 3.705 25 N -0.495 5.495 26 C 0.144 3.856 27 H 0.252 0.748 28 H 0.074 0.926 29 H 0.034 0.966 30 H 0.375 0.625 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.204 0.796 37 H 0.028 0.972 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -18.807 -1.007 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.093 0.907 9 N -0.322 5.322 10 C 0.023 3.977 11 C 0.020 3.980 12 H 0.075 0.925 13 O -0.364 6.364 14 C -0.125 4.125 15 H 0.106 0.894 16 C 0.015 3.985 17 N -0.350 5.350 18 C 0.347 3.653 19 O -0.404 6.404 20 C -0.012 4.012 21 C -0.194 4.194 22 C -0.019 4.019 23 N -0.224 5.224 24 C 0.007 3.993 25 N -0.211 5.211 26 C 0.018 3.982 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.222 0.778 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.179 0.821 35 H 0.193 0.807 36 H 0.220 0.780 37 H 0.046 0.954 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.511 -18.834 -1.361 19.414 hybrid contribution -0.049 1.156 0.427 1.234 sum 4.462 -17.677 -0.934 18.256 Atomic orbital electron populations 1.69928 1.04975 1.25182 1.56852 1.24793 0.95652 0.97807 1.02211 0.86114 0.78797 0.83427 0.77500 1.21625 1.21624 1.20597 1.19027 0.91190 0.82781 1.42294 0.90652 1.44305 1.09097 0.99810 1.79030 1.22097 0.86666 0.91499 0.97447 1.23276 0.94262 0.98148 0.82287 0.92451 1.86400 1.54794 1.76199 1.18963 1.22503 0.97998 0.94206 0.97804 0.89354 1.21370 0.93799 0.90742 0.92635 1.46005 1.47673 1.25430 1.15858 1.17782 0.80005 0.81181 0.86354 1.90805 1.62675 1.70135 1.16739 1.21763 0.94800 0.93510 0.91113 1.23010 0.97277 0.95507 1.03634 1.23367 0.92478 0.97904 0.88104 1.68379 1.21259 1.15230 1.17530 1.25043 0.87693 0.86480 1.00110 1.68383 1.17086 1.31999 1.03655 1.21323 0.93987 0.85573 0.97288 0.93739 0.90792 0.94844 0.77849 0.91322 0.89754 0.75171 0.82121 0.80650 0.77994 0.95434 0.96032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.68 55.49 0.59 -26.00 16 2 C -0.01 -0.24 5.40 -17.43 -0.09 -0.33 16 3 Si 0.91 22.04 29.56 -169.99 -5.03 17.02 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.22 -6.27 10.24 -15.06 -0.15 -6.43 16 8 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 9 N -0.60 -15.08 3.40 -169.93 -0.58 -15.66 16 10 C 0.15 3.43 5.16 -2.41 -0.01 3.41 16 11 C 0.08 1.44 4.19 -24.47 -0.10 1.34 16 12 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 13 O -0.56 -9.85 12.28 -35.23 -0.43 -10.28 16 14 C -0.11 -1.77 2.91 -88.79 -0.26 -2.03 16 15 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.12 4.54 -4.04 -0.02 2.10 16 17 N -0.70 -9.75 5.42 -61.05 -0.33 -10.08 16 18 C 0.56 8.06 7.83 -12.05 -0.09 7.96 16 19 O -0.53 -8.85 16.43 5.38 0.09 -8.77 16 20 C 0.14 1.63 6.79 -82.64 -0.56 1.07 16 21 C -0.17 -1.62 9.72 -38.91 -0.38 -2.00 16 22 C 0.15 1.16 11.31 -17.20 -0.19 0.97 16 23 N -0.51 -4.77 10.42 -14.60 -0.15 -4.92 16 24 C 0.29 2.75 12.28 -92.27 -1.13 1.61 16 25 N -0.49 -5.57 9.70 -11.14 -0.11 -5.68 16 26 C 0.14 2.98 6.64 -3.06 -0.02 2.96 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.07 1.89 6.93 -51.93 -0.36 1.53 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.37 5.27 9.12 45.56 0.42 5.68 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.50 7.49 -51.93 -0.39 1.12 16 33 H 0.41 5.33 7.79 -40.82 -0.32 5.01 16 34 H 0.16 1.33 7.74 -52.49 -0.41 0.92 16 35 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.20 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.03 0.60 7.73 -51.93 -0.40 0.20 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -33.94 325.91 -8.02 -41.95 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.96 Total: 6.86 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -3.02 Total: 10.64 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.58 Total: -62.34 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.34 Total: -19.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.94 -8.02 -41.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958493887.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.845 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds