Wall clock time and date at job start Tue Mar 31 2020 03:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47302 * 234.48904 * 3 2 1 5 5 H 1.48502 * 109.47147 * 114.49144 * 3 2 1 6 6 H 1.48504 * 109.46982 * 354.49272 * 3 2 1 7 7 C 1.38812 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00344 * 15.14360 * 7 2 1 9 9 N 1.36941 * 119.99917 * 195.14817 * 7 2 1 10 10 C 1.47022 * 125.64781 * 9.74895 * 9 7 2 11 11 C 1.54343 * 107.26379 * 178.85149 * 10 9 7 12 12 H 1.08993 * 110.84871 * 219.67080 * 11 10 9 13 13 O 1.42897 * 110.66628 * 96.51874 * 11 10 9 14 14 C 1.55153 * 103.02033 * 338.13912 * 11 10 9 15 15 H 1.08998 * 111.00380 * 277.23746 * 14 11 10 16 16 C 1.53001 * 111.03946 * 153.39923 * 14 11 10 17 17 N 1.46504 * 109.47255 * 181.33257 * 16 14 11 18 18 C 1.34770 * 119.99929 * 179.97438 * 17 16 14 19 19 O 1.21516 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.48147 * 120.00279 * 179.97438 * 18 17 16 21 21 C 1.39718 * 120.18589 * 179.72704 * 20 18 17 22 22 C 1.38827 * 117.89896 * 179.74229 * 21 20 18 23 23 C 1.38573 * 118.06599 * 0.52008 * 22 21 20 24 24 N 1.32178 * 120.06801 * 359.73346 * 23 22 21 25 25 N 1.28343 * 122.30322 * 359.97438 * 24 23 22 26 26 C 1.47428 * 125.64931 * 190.05571 * 9 7 2 27 27 H 0.97005 * 120.00002 * 182.98035 * 1 2 3 28 28 H 1.09003 * 109.88013 * 298.38931 * 10 9 7 29 29 H 1.08998 * 109.88605 * 59.55906 * 10 9 7 30 30 H 0.96700 * 113.99862 * 66.41842 * 13 11 10 31 31 H 1.09010 * 109.46498 * 301.32870 * 16 14 11 32 32 H 1.08997 * 109.46992 * 61.32683 * 16 14 11 33 33 H 0.97002 * 119.99802 * 359.97438 * 17 16 14 34 34 H 1.07999 * 121.05129 * 359.97438 * 21 20 18 35 35 H 1.07992 * 120.96815 * 180.23352 * 22 21 20 36 36 H 1.07999 * 119.96669 * 179.70943 * 23 22 21 37 37 H 1.09008 * 110.36455 * 322.93076 * 26 9 7 38 38 H 1.08996 * 110.36425 * 85.13781 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.2020 1.6398 -1.1396 5 1 3.0003 1.7562 1.2741 6 1 1.2907 2.7432 -0.1344 7 6 2.0102 -1.2021 -0.0005 8 1 1.4984 -2.1211 -0.2453 9 7 3.3440 -1.2228 0.3094 10 6 4.1149 -0.0951 0.8529 11 6 5.5606 -0.5906 1.0693 12 1 5.9722 -0.1929 1.9969 13 8 6.3868 -0.2361 -0.0413 14 6 5.3926 -2.1304 1.1591 15 1 5.0988 -2.4335 2.1640 16 6 6.6717 -2.8488 0.7247 17 7 6.4651 -4.2976 0.7921 18 6 7.4631 -5.1371 0.4521 19 8 8.5341 -4.6923 0.0892 20 6 7.2545 -6.6022 0.5208 21 6 8.2846 -7.4760 0.1638 22 6 8.0392 -8.8396 0.2511 23 6 6.7859 -9.2506 0.6759 24 7 5.8661 -8.3546 0.9894 25 7 6.0856 -7.0922 0.9171 26 6 4.2459 -2.3777 0.1473 27 1 -0.4850 -0.8390 0.0437 28 1 4.1073 0.7342 0.1456 29 1 3.6874 0.2221 1.8040 30 1 6.5233 0.7159 -0.1419 31 1 6.9187 -2.5641 -0.2982 32 1 7.4896 -2.5671 1.3878 33 1 5.6100 -4.6526 1.0814 34 1 9.2427 -7.1024 -0.1661 35 1 8.8014 -9.5591 -0.0089 36 1 6.5603 -10.3042 0.7506 37 1 3.7229 -3.3039 0.3855 38 1 4.6364 -2.4142 -0.8697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958511489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:21 Heat of formation + Delta-G solvation = 15.880387 kcal Electronic energy + Delta-G solvation = -22930.828294 eV Core-core repulsion = 19389.394704 eV Total energy + Delta-G solvation = -3541.433590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.48062 -39.63639 -38.61271 -35.26207 -34.89213 -33.56897 -33.14690 -32.21765 -30.26014 -28.17970 -26.50443 -25.16444 -24.81014 -23.12530 -21.28007 -20.81853 -19.92860 -18.53581 -17.88719 -17.67341 -17.12172 -16.73488 -15.86423 -15.78150 -15.54020 -14.90990 -14.74680 -14.35410 -14.04909 -13.83200 -13.64166 -13.42005 -13.16236 -12.73084 -12.39541 -12.04407 -11.87955 -11.19288 -11.16843 -10.84310 -10.72922 -10.59737 -10.46042 -10.32800 -10.17505 -10.09777 -9.97622 -9.23777 -9.09798 -8.97333 -8.71736 -7.05571 -6.32051 -3.22180 0.09126 0.34610 2.42604 2.82962 3.34444 3.34612 3.47150 3.56204 3.68457 4.02457 4.20995 4.27657 4.37914 4.55490 4.60326 4.71010 4.76768 5.04800 5.11599 5.17224 5.27028 5.43484 5.46248 5.58057 5.64953 5.69607 5.76118 6.07486 6.09058 6.30059 6.31243 6.44948 6.54414 6.75903 7.33293 7.64517 7.86834 7.95155 8.18859 8.32672 9.03643 9.54928 10.21355 11.19272 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.003610 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.968871 B = 7754.003528 C = 8698.749889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.024 4.024 3 Si 1.073 2.927 4 H -0.297 1.297 5 H -0.288 1.288 6 H -0.302 1.302 7 C -0.321 4.321 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.082 3.918 11 C 0.102 3.898 12 H 0.068 0.932 13 O -0.558 6.558 14 C -0.111 4.111 15 H 0.096 0.904 16 C 0.138 3.862 17 N -0.701 5.701 18 C 0.573 3.427 19 O -0.531 6.531 20 C 0.027 3.973 21 C -0.066 4.066 22 C -0.123 4.123 23 C 0.053 3.947 24 N -0.239 5.239 25 N -0.208 5.208 26 C 0.143 3.857 27 H 0.262 0.738 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.377 0.623 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.413 0.587 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.046 0.954 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.060 -14.383 3.240 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.224 4.224 3 Si 0.908 3.092 4 H -0.226 1.226 5 H -0.216 1.216 6 H -0.230 1.230 7 C -0.449 4.449 8 H 0.097 0.903 9 N -0.336 5.336 10 C -0.043 4.043 11 C 0.042 3.958 12 H 0.086 0.914 13 O -0.364 6.364 14 C -0.131 4.131 15 H 0.114 0.886 16 C 0.015 3.985 17 N -0.352 5.352 18 C 0.355 3.645 19 O -0.407 6.407 20 C -0.119 4.119 21 C -0.096 4.096 22 C -0.152 4.152 23 C -0.110 4.110 24 N -0.082 5.082 25 N -0.055 5.055 26 C 0.017 3.983 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.250 0.750 34 H 0.181 0.819 35 H 0.176 0.824 36 H 0.195 0.805 37 H 0.064 0.936 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 17.976 -12.720 3.363 22.277 hybrid contribution 1.165 -1.668 -0.330 2.061 sum 19.141 -14.388 3.033 24.137 Atomic orbital electron populations 1.70896 1.05674 1.29162 1.51280 1.25852 0.96545 1.00918 0.99038 0.83799 0.73244 0.76170 0.76013 1.22602 1.21591 1.22982 1.20191 0.81869 0.96230 1.46573 0.90250 1.44743 1.06111 1.07586 1.75191 1.22748 0.91112 0.92583 0.97885 1.22723 0.90235 0.94291 0.88537 0.91410 1.86451 1.70707 1.28721 1.50522 1.22725 0.95421 0.93601 1.01323 0.88623 1.21276 0.97018 0.76875 1.03362 1.45967 1.16110 1.07332 1.65770 1.17523 0.84471 0.84094 0.78413 1.90805 1.25480 1.77005 1.47430 1.22941 0.92892 0.96673 0.99404 1.22466 1.00574 0.93078 0.93463 1.22474 0.98646 0.96426 0.97615 1.24557 0.90769 1.02308 0.93334 1.73190 1.27945 0.95966 1.11057 1.73277 1.17488 1.07240 1.07536 1.21607 0.89365 0.91852 0.95452 0.92823 0.94685 0.92939 0.77528 0.89604 0.91147 0.75038 0.81917 0.82406 0.80452 0.93600 0.95205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.71 55.49 0.76 -28.68 16 2 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 3 Si 1.07 26.76 24.52 -169.99 -4.17 22.59 16 4 H -0.30 -7.18 6.82 56.52 0.39 -6.80 16 5 H -0.29 -6.43 5.41 56.52 0.31 -6.12 16 6 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 7 C -0.32 -9.31 10.56 -15.06 -0.16 -9.47 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 9 N -0.61 -14.94 3.33 -170.06 -0.57 -15.50 16 10 C 0.08 1.74 4.38 -3.05 -0.01 1.72 16 11 C 0.10 1.65 4.09 -24.89 -0.10 1.55 16 12 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 13 O -0.56 -8.63 12.09 -35.23 -0.43 -9.06 16 14 C -0.11 -1.76 3.03 -88.47 -0.27 -2.03 16 15 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 16 C 0.14 1.99 4.74 -4.04 -0.02 1.97 16 17 N -0.70 -9.58 5.40 -61.15 -0.33 -9.91 16 18 C 0.57 7.96 7.82 -12.19 -0.10 7.87 16 19 O -0.53 -8.51 16.39 5.35 0.09 -8.42 16 20 C 0.03 0.33 6.83 -82.83 -0.57 -0.24 16 21 C -0.07 -0.58 9.73 -38.81 -0.38 -0.96 16 22 C -0.12 -0.73 10.20 -39.24 -0.40 -1.13 16 23 C 0.05 0.38 11.31 -17.28 -0.20 0.19 16 24 N -0.24 -2.75 11.51 30.59 0.35 -2.40 16 25 N -0.21 -2.68 10.75 33.32 0.36 -2.33 16 26 C 0.14 2.89 6.40 -2.53 -0.02 2.87 16 27 H 0.26 8.21 8.73 -40.82 -0.36 7.85 16 28 H 0.04 0.79 3.82 -51.93 -0.20 0.59 16 29 H 0.05 1.14 6.70 -51.93 -0.35 0.80 16 30 H 0.38 4.32 9.12 45.56 0.42 4.74 16 31 H 0.09 1.40 7.43 -51.92 -0.39 1.02 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.41 5.44 7.69 -40.82 -0.31 5.12 16 34 H 0.16 1.20 7.72 -52.49 -0.41 0.80 16 35 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16 36 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.03 0.64 8.01 -51.93 -0.42 0.22 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -36.60 317.57 -5.33 -41.93 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.87 Total: 5.47 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.31 Total: 1.53 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.57 Total: -58.83 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.34 Total: -17.48 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -4.17 Total: 22.59 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -36.60 -5.33 -41.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958511489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.815 kcal (2) G-P(sol) polarization free energy of solvation -36.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds