Wall clock time and date at job start Tue Mar 31 2020 03:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47302 * 234.48904 * 3 2 1 5 5 H 1.48502 * 109.47147 * 114.49144 * 3 2 1 6 6 H 1.48504 * 109.46982 * 354.49272 * 3 2 1 7 7 C 1.38812 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00344 * 15.14360 * 7 2 1 9 9 N 1.36941 * 119.99917 * 195.14817 * 7 2 1 10 10 C 1.47022 * 125.64781 * 9.74895 * 9 7 2 11 11 C 1.54343 * 107.26379 * 178.85149 * 10 9 7 12 12 H 1.08993 * 110.84871 * 219.67080 * 11 10 9 13 13 O 1.42897 * 110.66628 * 96.51874 * 11 10 9 14 14 C 1.55153 * 103.02033 * 338.13912 * 11 10 9 15 15 H 1.08998 * 111.00380 * 277.23746 * 14 11 10 16 16 C 1.53001 * 111.03946 * 153.39923 * 14 11 10 17 17 N 1.46504 * 109.47255 * 181.33257 * 16 14 11 18 18 C 1.34770 * 119.99929 * 179.97438 * 17 16 14 19 19 O 1.21516 * 119.99910 * 359.97438 * 18 17 16 20 20 C 1.48147 * 120.00279 * 179.97438 * 18 17 16 21 21 C 1.39718 * 120.18589 * 179.72704 * 20 18 17 22 22 C 1.38827 * 117.89896 * 179.74229 * 21 20 18 23 23 C 1.38573 * 118.06599 * 0.52008 * 22 21 20 24 24 N 1.32178 * 120.06801 * 359.73346 * 23 22 21 25 25 N 1.28343 * 122.30322 * 359.97438 * 24 23 22 26 26 C 1.47428 * 125.64931 * 190.05571 * 9 7 2 27 27 H 0.97005 * 120.00002 * 182.98035 * 1 2 3 28 28 H 1.09003 * 109.88013 * 298.38931 * 10 9 7 29 29 H 1.08998 * 109.88605 * 59.55906 * 10 9 7 30 30 H 0.96700 * 113.99862 * 66.41842 * 13 11 10 31 31 H 1.09010 * 109.46498 * 301.32870 * 16 14 11 32 32 H 1.08997 * 109.46992 * 61.32683 * 16 14 11 33 33 H 0.97002 * 119.99802 * 359.97438 * 17 16 14 34 34 H 1.07999 * 121.05129 * 359.97438 * 21 20 18 35 35 H 1.07992 * 120.96815 * 180.23352 * 22 21 20 36 36 H 1.07999 * 119.96669 * 179.70943 * 23 22 21 37 37 H 1.09008 * 110.36455 * 322.93076 * 26 9 7 38 38 H 1.08996 * 110.36425 * 85.13781 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.2020 1.6398 -1.1396 5 1 3.0003 1.7562 1.2741 6 1 1.2907 2.7432 -0.1344 7 6 2.0102 -1.2021 -0.0005 8 1 1.4984 -2.1211 -0.2453 9 7 3.3440 -1.2228 0.3094 10 6 4.1149 -0.0951 0.8529 11 6 5.5606 -0.5906 1.0693 12 1 5.9722 -0.1929 1.9969 13 8 6.3868 -0.2361 -0.0413 14 6 5.3926 -2.1304 1.1591 15 1 5.0988 -2.4335 2.1640 16 6 6.6717 -2.8488 0.7247 17 7 6.4651 -4.2976 0.7921 18 6 7.4631 -5.1371 0.4521 19 8 8.5341 -4.6923 0.0892 20 6 7.2545 -6.6022 0.5208 21 6 8.2846 -7.4760 0.1638 22 6 8.0392 -8.8396 0.2511 23 6 6.7859 -9.2506 0.6759 24 7 5.8661 -8.3546 0.9894 25 7 6.0856 -7.0922 0.9171 26 6 4.2459 -2.3777 0.1473 27 1 -0.4850 -0.8390 0.0437 28 1 4.1073 0.7342 0.1456 29 1 3.6874 0.2221 1.8040 30 1 6.5233 0.7159 -0.1419 31 1 6.9187 -2.5641 -0.2982 32 1 7.4896 -2.5671 1.3878 33 1 5.6100 -4.6526 1.0814 34 1 9.2427 -7.1024 -0.1661 35 1 8.8014 -9.5591 -0.0089 36 1 6.5603 -10.3042 0.7506 37 1 3.7229 -3.3039 0.3855 38 1 4.6364 -2.4142 -0.8697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958511489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:21 Heat of formation + Delta-G solvation = -16.681457 kcal Electronic energy + Delta-G solvation = -22932.240281 eV Core-core repulsion = 19389.394704 eV Total energy + Delta-G solvation = -3542.845577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23946 -40.78127 -39.95348 -36.58590 -36.30723 -34.39672 -34.17604 -33.78064 -31.81681 -29.76368 -27.81406 -26.29972 -25.61745 -24.58433 -22.80408 -22.05381 -21.35026 -19.85062 -19.41266 -18.59719 -18.20417 -17.64030 -17.21687 -16.87632 -16.78979 -15.97297 -15.87668 -15.64471 -15.56472 -15.13429 -14.85453 -14.68423 -14.34731 -14.12264 -14.07376 -13.52181 -13.10300 -12.67311 -12.62840 -12.33128 -12.17262 -11.79948 -11.62631 -11.34418 -11.33864 -11.23737 -11.13991 -10.97048 -10.87209 -10.54996 -10.22256 -9.13180 -8.68696 -5.49778 -0.62505 -0.27913 1.35728 1.49987 1.51827 1.71705 1.85520 2.54122 2.56381 2.75849 3.06251 3.18983 3.25002 3.40380 3.57731 3.65977 3.71680 3.78485 3.85301 3.91442 4.12934 4.25405 4.31889 4.50094 4.60468 4.70203 4.72975 4.80018 4.85284 4.90133 5.01061 5.14026 5.20359 5.29182 5.49776 6.06520 6.26283 6.79699 6.86734 6.91515 7.40577 7.46369 8.05876 8.84748 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.003610 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.968871 B = 7754.003528 C = 8698.749889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.084 4.084 3 Si 1.114 2.886 4 H -0.286 1.286 5 H -0.241 1.241 6 H -0.314 1.314 7 C -0.315 4.315 8 H 0.043 0.957 9 N -0.630 5.630 10 C 0.068 3.932 11 C 0.116 3.884 12 H 0.114 0.886 13 O -0.568 6.568 14 C -0.096 4.096 15 H 0.113 0.887 16 C 0.150 3.850 17 N -0.702 5.702 18 C 0.573 3.427 19 O -0.557 6.557 20 C 0.006 3.994 21 C -0.075 4.075 22 C -0.096 4.096 23 C 0.058 3.942 24 N -0.278 5.278 25 N -0.241 5.241 26 C 0.140 3.860 27 H 0.246 0.754 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.397 0.603 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.414 0.586 34 H 0.175 0.825 35 H 0.208 0.792 36 H 0.219 0.781 37 H 0.038 0.962 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.595 -15.217 4.200 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.276 4.276 3 Si 0.941 3.059 4 H -0.214 1.214 5 H -0.165 1.165 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.061 0.939 9 N -0.358 5.358 10 C -0.057 4.057 11 C 0.056 3.944 12 H 0.132 0.868 13 O -0.376 6.376 14 C -0.116 4.116 15 H 0.131 0.869 16 C 0.027 3.973 17 N -0.353 5.353 18 C 0.357 3.643 19 O -0.435 6.435 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.125 4.125 23 C -0.104 4.104 24 N -0.120 5.120 25 N -0.087 5.087 26 C 0.015 3.985 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.247 0.753 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.192 0.808 35 H 0.225 0.775 36 H 0.236 0.764 37 H 0.057 0.943 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 21.547 -13.579 4.344 25.837 hybrid contribution 0.077 -1.647 -0.707 1.794 sum 21.624 -15.226 3.637 26.696 Atomic orbital electron populations 1.71009 1.07033 1.28292 1.54503 1.27275 0.96538 1.04761 0.99015 0.83362 0.72503 0.71424 0.78572 1.21432 1.16526 1.24367 1.20078 0.84326 0.94869 1.45068 0.93927 1.44827 1.05283 1.10259 1.75415 1.23029 0.93904 0.91550 0.97186 1.22692 0.87417 0.93771 0.90558 0.86803 1.86438 1.69912 1.30772 1.50522 1.22635 0.94007 0.94323 1.00603 0.86873 1.21088 0.96517 0.77183 1.02554 1.45971 1.16302 1.07182 1.65804 1.17829 0.83904 0.85099 0.77487 1.90775 1.26307 1.77749 1.48663 1.22782 0.94086 0.95791 1.01442 1.22731 1.00202 0.94092 0.93370 1.23009 0.98964 0.95863 0.94663 1.25272 0.90507 1.03422 0.91214 1.73086 1.30030 0.96008 1.12907 1.73180 1.18241 1.08382 1.08919 1.21695 0.90231 0.90352 0.96229 0.94473 0.94951 0.93039 0.75293 0.91482 0.89450 0.74897 0.80802 0.77503 0.76435 0.94324 0.96603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.47 13.71 21.65 0.30 -63.17 16 2 C -0.08 -5.10 5.50 84.86 0.47 -4.63 16 3 Si 1.11 53.62 24.52 68.60 1.68 55.30 16 4 H -0.29 -13.13 6.82 99.48 0.68 -12.45 16 5 H -0.24 -9.72 5.41 99.48 0.54 -9.18 16 6 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 7 C -0.31 -18.84 10.56 84.03 0.89 -17.95 16 8 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 9 N -0.63 -30.93 3.33 -691.94 -2.30 -33.23 16 10 C 0.07 2.70 4.38 86.74 0.38 3.08 16 11 C 0.12 3.32 4.09 31.79 0.13 3.45 16 12 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 13 O -0.57 -15.64 12.09 -148.98 -1.80 -17.44 16 14 C -0.10 -2.86 3.03 -9.40 -0.03 -2.89 16 15 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 16 C 0.15 4.09 4.74 86.38 0.41 4.50 16 17 N -0.70 -18.97 5.40 -465.67 -2.51 -21.48 16 18 C 0.57 15.81 7.82 86.88 0.68 16.49 16 19 O -0.56 -17.56 16.39 -3.76 -0.06 -17.62 16 20 C 0.01 0.14 6.83 41.99 0.29 0.42 16 21 C -0.08 -1.16 9.73 22.77 0.22 -0.94 16 22 C -0.10 -0.78 10.20 22.49 0.23 -0.55 16 23 C 0.06 0.67 11.31 84.72 0.96 1.63 16 24 N -0.28 -6.17 11.51 -57.15 -0.66 -6.82 16 25 N -0.24 -6.21 10.75 -48.49 -0.52 -6.74 16 26 C 0.14 5.67 6.40 86.85 0.56 6.23 16 27 H 0.25 16.34 8.73 -92.70 -0.81 15.53 16 28 H 0.03 1.35 3.82 -2.39 -0.01 1.34 16 29 H 0.05 2.07 6.70 -2.39 -0.02 2.06 16 30 H 0.40 7.49 9.12 -74.06 -0.68 6.81 16 31 H 0.07 2.12 7.43 -2.38 -0.02 2.10 16 32 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.41 11.04 7.69 -92.71 -0.71 10.32 16 34 H 0.17 2.21 7.72 -2.91 -0.02 2.19 16 35 H 0.21 -0.39 8.06 -2.91 -0.02 -0.41 16 36 H 0.22 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.02 0.69 8.01 -2.39 -0.02 0.67 16 Total: -1.00 -84.87 317.57 -1.21 -86.08 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -0.51 Total: 16.29 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.17 Total: 8.84 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.70 Total: -131.45 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.86 Total: -35.07 kcal Atomic # 14 Polarization: 53.62 SS G_CDS: 1.68 Total: 55.30 kcal Total: -84.87 -1.21 -86.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958511489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.397 kcal (2) G-P(sol) polarization free energy of solvation -84.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds