Wall clock time and date at job start Tue Mar 31 2020 03:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86796 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47350 * 240.00229 * 3 2 1 5 5 H 1.48503 * 109.47089 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47596 * 120.00171 * 3 2 1 7 7 C 1.38811 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99945 * 197.35351 * 7 2 1 9 9 N 1.36937 * 120.00340 * 17.34632 * 7 2 1 10 10 C 1.46925 * 120.63308 * 207.68272 * 9 7 2 11 11 C 1.53188 * 108.77262 * 233.62679 * 10 9 7 12 12 C 1.53040 * 109.34006 * 305.34976 * 11 10 9 13 13 C 1.53105 * 109.50421 * 61.34814 * 12 11 10 14 14 H 1.09000 * 109.48698 * 58.61813 * 13 12 11 15 15 N 1.46504 * 109.51404 * 178.68583 * 13 12 11 16 16 C 1.34778 * 119.99830 * 204.87467 * 15 13 12 17 17 O 1.21546 * 119.99932 * 359.97438 * 16 15 13 18 18 C 1.47934 * 120.00141 * 180.02562 * 16 15 13 19 19 C 1.39979 * 120.11884 * 179.97438 * 18 16 15 20 20 C 1.38409 * 117.97181 * 179.97438 * 19 18 16 21 21 C 1.39358 * 118.03681 * 0.02562 * 20 19 18 22 22 O 1.35514 * 120.03140 * 179.97438 * 21 20 19 23 23 N 1.32680 * 119.94088 * 359.97438 * 21 20 19 24 24 N 1.28361 * 122.19206 * 359.73422 * 23 21 20 25 25 C 1.46928 * 120.62463 * 27.69765 * 9 7 2 26 26 H 0.97007 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.58513 * 113.83916 * 10 9 7 28 28 H 1.08992 * 109.70519 * 353.48463 * 10 9 7 29 29 H 1.09002 * 109.50095 * 65.31604 * 11 10 9 30 30 H 1.09000 * 109.50144 * 185.38068 * 11 10 9 31 31 H 1.09007 * 109.46039 * 181.40376 * 12 11 10 32 32 H 1.08997 * 109.46245 * 301.35489 * 12 11 10 33 33 H 0.96997 * 120.00149 * 24.87196 * 15 13 12 34 34 H 1.08001 * 121.01430 * 359.96188 * 19 18 16 35 35 H 1.07994 * 120.98586 * 179.97438 * 20 19 18 36 36 H 0.96702 * 113.99971 * 89.99920 * 22 21 20 37 37 H 1.09002 * 109.58783 * 246.15803 * 25 9 7 38 38 H 1.09003 * 109.58686 * 6.58864 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0101 -1.2021 -0.0005 8 1 3.0533 -1.2235 0.2784 9 7 1.3722 -2.3610 -0.3546 10 6 1.8193 -3.6548 0.1790 11 6 2.0749 -4.6092 -0.9917 12 6 0.8196 -4.6894 -1.8634 13 6 0.5013 -3.3032 -2.4301 14 1 1.3499 -2.9449 -3.0128 15 7 -0.6821 -3.3859 -3.2898 16 6 -0.8692 -2.4777 -4.2679 17 8 -0.0564 -1.5899 -4.4364 18 6 -2.0644 -2.5608 -5.1357 19 6 -2.2615 -1.6186 -6.1520 20 6 -3.3945 -1.7386 -6.9378 21 6 -4.2698 -2.7893 -6.6691 22 8 -5.3917 -2.9446 -7.4131 23 7 -4.0036 -3.6375 -5.6841 24 7 -2.9510 -3.5324 -4.9569 25 6 0.2278 -2.3340 -1.2757 26 1 -0.4850 0.8401 0.0004 27 1 1.0469 -4.0695 0.8267 28 1 2.7392 -3.5197 0.7478 29 1 2.9087 -4.2386 -1.5879 30 1 2.3148 -5.6005 -0.6073 31 1 0.9908 -5.3873 -2.6832 32 1 -0.0196 -5.0367 -1.2607 33 1 -1.3309 -4.0943 -3.1551 34 1 -1.5512 -0.8221 -6.3177 35 1 -3.5950 -1.0383 -7.7351 36 1 -5.2724 -3.5044 -8.1925 37 1 -0.6744 -2.6411 -0.7467 38 1 0.0984 -1.3254 -1.6683 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006622254.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:41 Heat of formation + Delta-G solvation = -21.272231 kcal Electronic energy + Delta-G solvation = -23219.558582 eV Core-core repulsion = 19676.513934 eV Total energy + Delta-G solvation = -3543.044648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.44430 -40.82868 -39.05133 -38.54707 -35.93104 -34.52982 -34.34897 -32.88441 -31.87838 -30.38107 -27.25330 -26.55933 -25.61100 -23.99345 -23.65675 -21.94243 -21.09944 -20.24255 -19.35448 -18.73974 -18.68918 -17.30427 -17.10735 -16.78079 -16.27600 -15.98161 -15.63783 -15.38752 -15.20470 -15.00499 -14.61746 -14.51597 -14.14348 -14.02174 -13.49889 -13.43013 -13.02080 -12.93066 -12.64285 -12.53115 -12.28676 -12.07177 -11.73172 -11.64354 -11.50171 -11.28755 -11.18089 -10.93702 -10.72888 -10.55707 -10.18770 -8.70141 -7.89263 -5.35209 -0.80650 -0.42993 1.41385 1.43775 1.47732 1.52758 1.86909 2.20337 2.43807 2.49794 2.83132 3.26705 3.39594 3.60172 3.70163 3.80295 3.86731 3.94431 4.13402 4.25580 4.45276 4.47815 4.59996 4.72917 4.81942 4.88553 4.91938 5.10046 5.18848 5.20442 5.30041 5.37057 5.52287 5.61646 5.74128 6.32940 6.41402 6.45650 7.02563 7.12374 7.30426 7.84254 8.34045 9.15842 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.004295 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.933878 B = 6517.086597 C = 7603.199391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.120 4.120 12 C -0.109 4.109 13 C 0.129 3.871 14 H 0.062 0.938 15 N -0.688 5.688 16 C 0.568 3.432 17 O -0.561 6.561 18 C 0.006 3.994 19 C -0.053 4.053 20 C -0.115 4.115 21 C 0.279 3.721 22 O -0.473 6.473 23 N -0.285 5.285 24 N -0.197 5.197 25 C 0.178 3.822 26 H 0.247 0.753 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.176 0.824 35 H 0.207 0.793 36 H 0.433 0.567 37 H -0.003 1.003 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 -9.480 -16.547 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.791 3.209 4 H -0.208 1.208 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.397 4.397 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.009 3.991 11 C -0.159 4.159 12 C -0.147 4.147 13 C 0.023 3.977 14 H 0.081 0.919 15 N -0.339 5.339 16 C 0.352 3.648 17 O -0.439 6.439 18 C -0.142 4.142 19 C -0.082 4.082 20 C -0.144 4.144 21 C 0.094 3.906 22 O -0.283 6.283 23 N -0.139 5.139 24 N -0.047 5.047 25 C 0.051 3.949 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.254 0.746 34 H 0.193 0.807 35 H 0.224 0.776 36 H 0.298 0.702 37 H 0.015 0.985 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.498 -9.697 -15.443 19.358 hybrid contribution 0.375 1.844 -0.726 2.017 sum -6.123 -7.853 -16.169 18.989 Atomic orbital electron populations 1.70179 1.06806 1.25731 1.55152 1.25800 0.95988 1.01654 1.01073 0.85397 0.77715 0.79332 0.78417 1.20798 1.22082 1.19349 1.19501 0.93136 0.86175 1.40850 0.91195 1.44241 1.35935 1.02777 1.50314 1.21193 0.97605 0.85590 0.94687 1.21894 0.96835 1.00214 0.96968 1.21679 0.99246 0.93784 0.99981 1.21695 0.86571 0.98384 0.91066 0.91933 1.45841 1.25990 1.30430 1.31599 1.17861 0.84409 0.81878 0.80667 1.90830 1.45751 1.35391 1.71882 1.22742 0.96702 0.96501 0.98216 1.22633 0.97825 0.97267 0.90460 1.22927 0.91141 0.99085 1.01273 1.21176 0.86638 0.91518 0.91252 1.84711 1.28219 1.73183 1.42175 1.72975 1.10965 1.24755 1.05186 1.73188 0.96908 1.17115 1.17442 1.20788 0.88131 0.97561 0.88411 0.94374 0.96223 0.92406 0.92610 0.88364 0.89453 0.90960 0.74628 0.80699 0.77596 0.70245 0.98472 0.93449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 11.19 21.65 0.24 -58.07 16 2 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 3 Si 0.96 47.28 29.59 68.60 2.03 49.31 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.27 -15.30 9.59 84.03 0.81 -14.49 16 8 H 0.07 3.86 7.89 -2.91 -0.02 3.84 16 9 N -0.61 -31.69 2.99 -699.10 -2.09 -33.78 16 10 C 0.13 5.47 6.51 86.36 0.56 6.03 16 11 C -0.12 -3.74 6.08 30.67 0.19 -3.55 16 12 C -0.11 -3.31 5.36 30.64 0.16 -3.15 16 13 C 0.13 5.10 2.60 45.09 0.12 5.22 16 14 H 0.06 2.78 7.58 -2.39 -0.02 2.76 16 15 N -0.69 -24.04 5.07 -444.84 -2.26 -26.30 16 16 C 0.57 20.87 7.77 86.81 0.67 21.54 16 17 O -0.56 -24.85 16.05 -3.86 -0.06 -24.91 16 18 C 0.01 0.17 6.83 42.00 0.29 0.45 16 19 C -0.05 -1.17 9.72 22.73 0.22 -0.95 16 20 C -0.11 -1.71 10.14 22.58 0.23 -1.48 16 21 C 0.28 5.11 7.85 84.83 0.67 5.78 16 22 O -0.47 -5.86 13.56 -88.16 -1.20 -7.06 16 23 N -0.28 -7.31 11.54 -170.01 -1.96 -9.27 16 24 N -0.20 -5.66 10.73 -48.51 -0.52 -6.18 16 25 C 0.18 9.10 4.89 86.36 0.42 9.52 16 26 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 27 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.06 2.29 7.94 -2.39 -0.02 2.27 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.42 12.41 7.95 -92.71 -0.74 11.68 16 34 H 0.18 3.55 7.71 -2.91 -0.02 3.53 16 35 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.43 0.35 9.06 -74.06 -0.67 -0.33 16 37 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.05 2.87 6.04 -2.39 -0.01 2.85 16 Total: -1.00 -79.90 323.68 -1.36 -81.26 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.29 Total: 12.57 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 4.75 Total: 22.42 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -6.59 Total: -133.60 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.26 Total: -31.96 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -79.90 -1.36 -81.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006622254.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.985 kcal (2) G-P(sol) polarization free energy of solvation -79.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds