Wall clock time and date at job start Tue Mar 31 2020 03:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48503 * 109.47148 * 272.90365 * 3 2 1 5 5 H 1.48502 * 109.47063 * 32.89956 * 3 2 1 6 6 H 1.48495 * 109.47282 * 152.89928 * 3 2 1 7 7 C 1.38816 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99754 * 339.35804 * 7 2 1 9 9 N 1.36938 * 119.99931 * 159.36141 * 7 2 1 10 10 C 1.46925 * 120.63048 * 332.59898 * 9 7 2 11 11 C 1.53194 * 108.77457 * 233.63243 * 10 9 7 12 12 C 1.53045 * 109.30933 * 305.36338 * 11 10 9 13 13 C 1.53045 * 109.53790 * 61.36969 * 12 11 10 14 14 H 1.08995 * 109.52409 * 58.59782 * 13 12 11 15 15 N 1.46497 * 109.49497 * 178.68085 * 13 12 11 16 16 C 1.34778 * 119.99640 * 204.83501 * 15 13 12 17 17 O 1.21593 * 120.00109 * 359.97438 * 16 15 13 18 18 C 1.47572 * 120.00018 * 180.02562 * 16 15 13 19 19 C 1.38046 * 119.73084 * 180.02562 * 18 16 15 20 20 N 1.34875 * 119.95146 * 179.97438 * 19 18 16 21 21 H 0.97006 * 120.30832 * 179.97438 * 20 19 18 22 22 C 1.34956 * 119.38548 * 359.97438 * 20 19 18 23 23 O 1.21853 * 120.27166 * 180.02562 * 22 20 19 24 24 C 1.41784 * 119.45410 * 359.97438 * 22 20 19 25 25 N 1.30597 * 120.04160 * 0.02562 * 24 22 20 26 26 C 1.46929 * 120.62825 * 152.61865 * 9 7 2 27 27 H 0.97002 * 119.99609 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.58843 * 353.41752 * 10 9 7 29 29 H 1.08997 * 109.58654 * 113.70477 * 10 9 7 30 30 H 1.08998 * 109.49955 * 65.31438 * 11 10 9 31 31 H 1.08998 * 109.49553 * 185.41873 * 11 10 9 32 32 H 1.08994 * 109.46369 * 301.34174 * 12 11 10 33 33 H 1.09002 * 109.45898 * 181.38267 * 12 11 10 34 34 H 0.97000 * 120.00343 * 24.84134 * 15 13 12 35 35 H 1.08004 * 120.02451 * 359.97438 * 19 18 16 36 36 H 1.08000 * 119.97787 * 180.29352 * 24 22 20 37 37 H 1.08992 * 109.58714 * 6.58652 * 26 9 7 38 38 H 1.08995 * 109.58688 * 246.15226 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4363 2.0819 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5771 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1075 0.3288 9 7 3.3138 -1.2400 -0.4186 10 6 3.8175 -0.2585 -1.3889 11 6 4.4618 -1.0081 -2.5593 12 6 5.5284 -1.9650 -2.0216 13 6 4.8746 -2.9904 -1.0925 14 1 4.1079 -3.5400 -1.6385 15 7 5.8912 -3.9249 -0.6033 16 6 5.5335 -5.1618 -0.2048 17 8 4.3669 -5.5018 -0.2510 18 6 6.5574 -6.1030 0.2886 19 6 6.1848 -7.3687 0.6948 20 7 7.1170 -8.2327 1.1460 21 1 6.8610 -9.1232 1.4331 22 6 8.4094 -7.8469 1.1944 23 8 9.2649 -8.6146 1.5988 24 6 8.7635 -6.5413 0.7698 25 7 7.8430 -5.7224 0.3367 26 6 4.2350 -2.2632 0.0945 27 1 -0.4850 0.8401 0.0004 28 1 2.9910 0.3502 -1.7556 29 1 4.5584 0.3816 -0.9101 30 1 3.6989 -1.5760 -3.0918 31 1 4.9244 -0.2926 -3.2391 32 1 6.2779 -1.3993 -1.4682 33 1 6.0056 -2.4818 -2.8543 34 1 6.8217 -3.6536 -0.5660 35 1 5.1477 -7.6668 0.6513 36 1 9.7958 -6.2253 0.8004 37 1 3.6840 -2.9771 0.7065 38 1 5.0118 -1.7881 0.6936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008336891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:42 Heat of formation + Delta-G solvation = -29.593454 kcal Electronic energy + Delta-G solvation = -23055.677889 eV Core-core repulsion = 19512.272406 eV Total energy + Delta-G solvation = -3543.405483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.85809 -40.90647 -39.28627 -38.48847 -36.43765 -35.88232 -34.22367 -32.66733 -31.88499 -30.40789 -27.19873 -26.53648 -25.84397 -24.13834 -23.70390 -22.27457 -21.29017 -20.10903 -19.51538 -18.74863 -18.22287 -17.40917 -17.18046 -17.04370 -16.87475 -16.23551 -15.77695 -15.63680 -15.41555 -15.37571 -14.88666 -14.65672 -14.40628 -14.08752 -13.73193 -13.63120 -13.28196 -12.89403 -12.80104 -12.74545 -12.55506 -12.41553 -11.82076 -11.66126 -11.49143 -11.33537 -11.24459 -10.77614 -10.59436 -10.17043 -9.44798 -8.90250 -8.16019 -5.49352 -0.58056 0.05342 1.31714 1.41032 1.43631 1.53616 1.73249 2.12213 2.42911 2.60556 2.96339 3.07670 3.10832 3.38610 3.68016 3.85398 3.88637 4.07556 4.13197 4.23555 4.35984 4.46367 4.68076 4.73252 4.80348 4.96871 5.03622 5.06972 5.13058 5.14817 5.23511 5.26252 5.40998 5.57186 5.86407 6.12426 6.28885 6.49404 6.67154 6.91448 7.23259 7.61906 7.99994 9.04238 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.031579 B = 0.003413 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.465877 B = 8201.710748 C = 8561.262744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.037 4.037 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.312 1.312 6 H -0.258 1.258 7 C -0.253 4.253 8 H 0.040 0.960 9 N -0.617 5.617 10 C 0.112 3.888 11 C -0.125 4.125 12 C -0.107 4.107 13 C 0.138 3.862 14 H 0.062 0.938 15 N -0.693 5.693 16 C 0.583 3.417 17 O -0.577 6.577 18 C -0.096 4.096 19 C 0.203 3.797 20 N -0.569 5.569 21 H 0.442 0.558 22 C 0.478 3.522 23 O -0.554 6.554 24 C 0.044 3.956 25 N -0.377 5.377 26 C 0.145 3.855 27 H 0.262 0.738 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.419 0.581 35 H 0.212 0.788 36 H 0.217 0.783 37 H 0.035 0.965 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.261 -12.648 -2.171 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.231 4.231 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.241 1.241 6 H -0.182 1.182 7 C -0.383 4.383 8 H 0.058 0.942 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.165 4.165 12 C -0.145 4.145 13 C 0.032 3.968 14 H 0.080 0.920 15 N -0.343 5.343 16 C 0.369 3.631 17 O -0.458 6.458 18 C -0.219 4.219 19 C 0.066 3.934 20 N -0.202 5.202 21 H 0.285 0.715 22 C 0.274 3.726 23 O -0.432 6.432 24 C -0.146 4.146 25 N -0.092 5.092 26 C 0.018 3.982 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.257 0.743 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.054 0.946 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.925 -12.352 -2.275 23.553 hybrid contribution -0.564 -0.317 0.730 0.976 sum 19.361 -12.669 -1.545 23.189 Atomic orbital electron populations 1.69993 1.07645 1.27373 1.55524 1.25965 0.95895 1.01301 0.99947 0.85783 0.78646 0.79326 0.77894 1.19358 1.24106 1.18238 1.18802 0.86884 0.93389 1.39232 0.94198 1.44376 1.07599 1.34234 1.48000 1.21555 0.97110 0.92025 0.90512 1.21913 0.98088 0.98997 0.97453 1.21647 0.97812 0.96058 0.98962 1.21330 0.90223 0.89855 0.95408 0.91990 1.45649 1.12176 1.12280 1.64207 1.17616 0.86571 0.82013 0.76875 1.90855 1.19822 1.77956 1.57123 1.20089 0.91521 0.94731 1.15580 1.23402 0.97234 0.88244 0.84545 1.43591 1.08087 1.17875 1.50681 0.71543 1.18949 0.81808 0.91212 0.80617 1.91003 1.47836 1.55969 1.48406 1.25069 1.01549 0.87949 1.00028 1.67640 0.99910 1.35203 1.06476 1.21289 0.92102 0.90273 0.94502 0.92865 0.93209 0.94005 0.92988 0.88502 0.89716 0.89135 0.74263 0.77152 0.76621 0.94589 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.68 13.97 21.65 0.30 -61.38 16 2 C -0.04 -2.18 5.23 84.86 0.44 -1.74 16 3 Si 0.96 46.56 24.34 68.60 1.67 48.23 16 4 H -0.27 -12.03 6.62 99.48 0.66 -11.37 16 5 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 6 H -0.26 -11.89 6.63 99.48 0.66 -11.23 16 7 C -0.25 -14.99 10.04 84.03 0.84 -14.15 16 8 H 0.04 2.66 8.06 -2.91 -0.02 2.63 16 9 N -0.62 -29.60 2.77 -699.11 -1.94 -31.54 16 10 C 0.11 4.56 4.21 86.36 0.36 4.92 16 11 C -0.13 -3.82 6.08 30.67 0.19 -3.63 16 12 C -0.11 -2.68 5.35 30.62 0.16 -2.52 16 13 C 0.14 4.39 2.60 45.07 0.12 4.51 16 14 H 0.06 2.37 7.58 -2.39 -0.02 2.36 16 15 N -0.69 -17.53 5.07 -445.28 -2.26 -19.79 16 16 C 0.58 15.65 7.75 86.71 0.67 16.32 16 17 O -0.58 -20.08 15.94 -4.01 -0.06 -20.14 16 18 C -0.10 -1.82 6.71 41.21 0.28 -1.55 16 19 C 0.20 2.57 10.77 84.18 0.91 3.47 16 20 N -0.57 -5.79 5.28 -316.88 -1.67 -7.46 16 21 H 0.44 1.95 8.92 -92.70 -0.83 1.12 16 22 C 0.48 7.46 7.74 85.09 0.66 8.11 16 23 O -0.55 -12.30 17.95 -4.84 -0.09 -12.38 16 24 C 0.04 0.61 11.23 85.75 0.96 1.57 16 25 N -0.38 -6.35 9.62 -183.47 -1.77 -8.11 16 26 C 0.14 5.84 6.09 86.36 0.53 6.36 16 27 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 28 H 0.05 2.26 4.49 -2.39 -0.01 2.25 16 29 H 0.04 1.59 7.07 -2.39 -0.02 1.57 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.42 8.31 7.92 -92.71 -0.73 7.58 16 35 H 0.21 1.91 7.58 -2.91 -0.02 1.89 16 36 H 0.22 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.04 1.64 7.93 -2.39 -0.02 1.62 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -81.06 315.74 -0.23 -81.29 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -0.54 Total: 9.59 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.12 Total: 21.70 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -7.33 Total: -128.28 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.15 Total: -32.53 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Total: -81.06 -0.23 -81.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008336891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.692 kcal (2) G-P(sol) polarization free energy of solvation -81.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds