Wall clock time and date at job start Tue Mar 31 2020 03:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99578 * 2 1 4 4 H 1.48505 * 109.47333 * 274.98787 * 3 2 1 5 5 H 1.48498 * 109.47096 * 34.99387 * 3 2 1 6 6 H 1.48500 * 109.46839 * 154.99106 * 3 2 1 7 7 C 1.38811 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00336 * 185.05951 * 7 2 1 9 9 N 1.36937 * 119.99808 * 5.05530 * 7 2 1 10 10 C 1.47582 * 134.49112 * 173.48168 * 9 7 2 11 11 C 1.53946 * 86.11632 * 155.36100 * 10 9 7 12 12 N 1.46502 * 113.74018 * 137.95213 * 11 10 9 13 13 C 1.34774 * 120.00185 * 156.92574 * 12 11 10 14 14 O 1.21623 * 119.99613 * 359.97438 * 13 12 11 15 15 C 1.47327 * 120.00314 * 180.02562 * 13 12 11 16 16 C 1.36684 * 126.19670 * 180.02562 * 15 13 12 17 17 N 1.34500 * 106.73279 * 179.97438 * 16 15 13 18 18 C 1.36618 * 107.93431 * 0.07366 * 17 16 15 19 19 N 1.29488 * 108.90282 * 359.90576 * 18 17 16 20 20 C 1.51102 * 122.83862 * 179.86500 * 18 17 16 21 21 O 1.43446 * 107.75710 * 345.47785 * 20 18 17 22 22 C 1.43010 * 114.08636 * 49.75183 * 21 20 18 23 23 C 1.46643 * 128.72044 * 180.13253 * 17 16 15 24 24 C 1.47813 * 134.45777 * 353.35772 * 9 7 2 25 25 H 0.97000 * 120.00337 * 359.97438 * 1 2 3 26 26 H 1.09005 * 113.76848 * 41.05862 * 10 9 7 27 27 H 1.08999 * 113.77044 * 269.66209 * 10 9 7 28 28 H 1.08993 * 113.74160 * 269.15373 * 11 10 9 29 29 H 0.97000 * 120.00058 * 336.92599 * 12 11 10 30 30 H 1.08006 * 126.63094 * 0.21562 * 16 15 13 31 31 H 1.08996 * 109.80284 * 225.90874 * 20 18 17 32 32 H 1.08997 * 109.80375 * 105.03552 * 20 18 17 33 33 H 1.08993 * 109.43147 * 169.48315 * 22 21 20 34 34 H 1.09002 * 109.39110 * 49.59893 * 22 21 20 35 35 H 1.09001 * 109.73542 * 283.24901 * 23 17 16 36 36 H 1.09003 * 109.73522 * 43.90047 * 23 17 16 37 37 H 1.08991 * 113.77235 * 90.37650 * 24 9 7 38 38 H 1.08998 * 113.83364 * 318.90935 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5042 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2040 0.0819 9 7 1.3297 -2.3857 -0.1056 10 6 1.7288 -3.7983 -0.2581 11 6 0.3712 -4.1420 0.3812 12 7 -0.3173 -5.2632 -0.2632 13 6 -1.2386 -5.9707 0.4201 14 8 -1.4982 -5.6787 1.5719 15 6 -1.9305 -7.0986 -0.2277 16 6 -2.8816 -7.8974 0.3430 17 7 -3.2452 -8.7944 -0.5909 18 6 -2.5189 -8.5434 -1.7205 19 7 -1.7385 -7.5336 -1.5018 20 6 -2.6604 -9.3602 -2.9839 21 8 -3.3731 -10.5600 -2.6517 22 6 -4.5770 -10.3379 -1.9125 23 6 -4.2333 -9.8732 -0.4910 24 6 -0.1000 -2.7609 -0.1093 25 1 -0.4850 0.8400 0.0004 26 1 2.5862 -4.0810 0.3527 27 1 1.8197 -4.1196 -1.2957 28 1 0.4078 -4.2331 1.4667 29 1 -0.1100 -5.4963 -1.1817 30 1 -3.2692 -7.8203 1.3481 31 1 -1.6739 -9.6124 -3.3730 32 1 -3.2184 -8.7937 -3.7293 33 1 -5.1482 -11.2649 -1.8628 34 1 -5.1714 -9.5719 -2.4106 35 1 -3.8149 -10.7042 0.0769 36 1 -5.1319 -9.5047 0.0039 37 1 -0.5475 -2.7768 -1.1031 38 1 -0.7001 -2.2169 0.6201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030524560.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:19 Heat of formation + Delta-G solvation = 48.645040 kcal Electronic energy + Delta-G solvation = -22608.044437 eV Core-core repulsion = 19068.031629 eV Total energy + Delta-G solvation = -3540.012808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.69120 -39.32885 -38.57518 -37.27035 -34.62320 -33.31706 -31.75582 -30.86485 -30.20117 -27.55821 -26.44816 -24.73553 -24.30848 -23.73014 -22.19957 -20.10136 -19.82606 -19.46909 -18.16201 -17.04150 -16.69286 -16.63274 -16.19939 -15.71423 -15.37606 -15.11340 -14.85894 -14.37181 -14.17046 -14.03442 -13.75354 -13.47205 -13.13092 -12.61820 -12.28718 -11.87419 -11.78612 -11.38938 -11.34666 -10.83579 -10.79514 -10.73104 -10.42269 -10.36831 -10.00787 -9.99064 -9.63162 -9.45403 -8.74590 -8.69933 -8.25058 -6.84166 -5.73127 -3.05826 1.50271 2.14127 2.23003 3.08273 3.43009 3.46811 3.50352 3.53410 3.75530 3.83410 3.87176 4.26078 4.36042 4.50685 4.54611 4.78361 4.82641 4.99208 5.04798 5.09538 5.22753 5.40431 5.53871 5.69009 5.76764 6.08527 6.17156 6.30774 6.35557 6.53198 6.64689 6.68735 6.89747 7.31156 7.43417 7.56639 7.64600 8.01233 8.09826 8.68538 9.08025 9.74268 10.63025 11.44255 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.040343 B = 0.002779 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.876301 B =10072.832666 C =10254.977240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.699 5.699 13 C 0.600 3.400 14 O -0.549 6.549 15 C -0.055 4.055 16 C 0.043 3.957 17 N -0.456 5.456 18 C 0.161 3.839 19 N -0.440 5.440 20 C 0.152 3.848 21 O -0.371 6.371 22 C 0.047 3.953 23 C 0.069 3.931 24 C 0.158 3.842 25 H 0.254 0.746 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.111 0.889 29 H 0.404 0.596 30 H 0.192 0.808 31 H 0.129 0.871 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.031 0.969 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -24.415 -4.702 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.100 0.900 9 N -0.335 5.335 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.348 5.348 13 C 0.385 3.615 14 O -0.427 6.427 15 C -0.185 4.185 16 C -0.095 4.095 17 N -0.140 5.140 18 C -0.103 4.103 19 N -0.161 5.161 20 C 0.074 3.926 21 O -0.288 6.288 22 C -0.030 4.030 23 C -0.054 4.054 24 C 0.031 3.969 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.129 0.871 29 H 0.239 0.761 30 H 0.209 0.791 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.139 0.861 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.049 0.951 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.723 -23.758 -4.427 26.439 hybrid contribution -0.186 0.788 0.176 0.829 sum -10.909 -22.970 -4.251 25.782 Atomic orbital electron populations 1.69857 1.05072 1.25419 1.55959 1.24855 0.95691 0.97622 1.02201 0.86097 0.78721 0.83482 0.77462 1.21625 1.21691 1.20501 1.18993 0.90729 0.81731 1.43721 0.90022 1.45720 1.02460 1.00564 1.84711 1.22873 0.94658 0.86636 0.97244 1.23933 0.93415 0.85375 0.98701 1.45928 1.39788 1.32287 1.16786 1.16847 0.79228 0.80303 0.85120 1.90789 1.65455 1.69422 1.17033 1.20899 1.03618 1.02160 0.91783 1.22446 0.99478 0.91541 0.96070 1.45174 1.31705 1.25310 1.11809 1.24160 0.95654 0.98740 0.91724 1.70215 1.21096 1.09506 1.15238 1.21286 0.99257 0.83271 0.88802 1.88160 1.36886 1.29872 1.73923 1.22990 0.87501 1.03475 0.89063 1.22818 0.92440 0.89388 1.00721 1.22651 0.87981 0.87972 0.98259 0.93586 0.93252 0.94559 0.87148 0.76089 0.79132 0.85324 0.89489 0.86095 0.91335 0.88443 0.87735 0.95114 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.16 11.51 55.49 0.64 -27.52 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.65 29.56 -169.99 -5.02 17.62 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.22 -6.49 10.70 -15.06 -0.16 -6.65 16 8 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 9 N -0.61 -16.30 3.70 -177.88 -0.66 -16.95 16 10 C 0.11 2.41 8.69 -2.97 -0.03 2.38 16 11 C 0.09 1.91 4.40 -70.14 -0.31 1.60 16 12 N -0.70 -12.73 5.37 -56.45 -0.30 -13.03 16 13 C 0.60 11.05 7.81 -12.56 -0.10 10.95 16 14 O -0.55 -11.63 16.50 5.26 0.09 -11.54 16 15 C -0.06 -0.85 6.99 -82.89 -0.58 -1.43 16 16 C 0.04 0.53 11.38 -16.94 -0.19 0.33 16 17 N -0.46 -4.44 3.12 -113.31 -0.35 -4.80 16 18 C 0.16 1.79 7.79 -154.59 -1.20 0.58 16 19 N -0.44 -6.26 10.99 -6.94 -0.08 -6.34 16 20 C 0.15 1.13 7.29 36.20 0.26 1.39 16 21 O -0.37 -2.61 10.78 -35.23 -0.38 -2.99 16 22 C 0.05 0.19 6.81 37.39 0.25 0.45 16 23 C 0.07 0.34 7.28 -3.73 -0.03 0.31 16 24 C 0.16 3.99 7.24 -2.84 -0.02 3.97 16 25 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.11 2.46 7.50 -51.93 -0.39 2.07 16 29 H 0.40 6.71 8.42 -40.82 -0.34 6.37 16 30 H 0.19 1.92 8.06 -52.48 -0.42 1.50 16 31 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.26 8.09 -51.93 -0.42 -0.17 16 35 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 2.05 7.37 -51.93 -0.38 1.67 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -36.88 325.41 -8.25 -45.12 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.89 Total: 1.92 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: -2.19 Total: 13.61 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -0.75 Total: -68.64 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.29 Total: -14.53 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.88 -8.25 -45.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030524560.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.768 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds